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Applied and Environmental Microbiology, September 2007, p. 5725-5730, Vol. 73, No. 18
0099-2240/07/$08.00+0 doi:10.1128/AEM.00241-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Bioresources Chemistry, Chiba University, 648 Matsudo, Matsudo-shi, Chiba 271-8510,1 Department of Chemistry, Gakushuin University, Mejiro 1-5-1, Toshima-ku, Tokyo 171-8588, Japan2
Received 31 January 2007/ Accepted 12 July 2007
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The predominant chemical forms of iodine in the environment are iodate (IO3–; oxidation state, +5) and iodide (I–; oxidation state, –1) (12, 41, 44). One of significant pathways in global iodine cycling is iodate reduction to iodide in oceans. The average concentration of total dissolved iodine in seawater is 0.45 µM (44). Thermodynamically, the concentration ratio between iodate and iodide (IO3–/I–) in oxygenated seawater (at pH 8.1 and pE 12.5) should be 3.2 x 1013, indicating that iodate is the more stable form and that iodide should not be detectable in seawater (31, 45). However, significant quantities of iodide at concentrations of up to 0.3 µM are observed in surface waters (4, 33, 34). It is widely speculated that this apparent disequilibrium is caused by biological reduction of iodate to iodide, and marine microorganisms such as bacteria (7, 8, 36) and phytoplankton (5, 39, 47) may play significant roles in the process. Iodide is also found as the dominant form of iodine in deep oxygenated waters (28), anoxic basins (6, 9, 10, 22, 37, 46, 48), and pore waters of marine sediments (11, 20, 26, 29). In these deep waters, iodide is often highly enriched at concentrations of from several micromolars to more than 1 mM. In addition to abiotic chemical reduction of iodate and microbial remineralization of organic iodine compounds, bacterial iodate reduction is expected to be an important process for maintaining the reduced form of iodine in these environments (8-10, 20, 22).
Until now, only a few studies of bacterial iodate reduction have been conducted. Tsunogai and Sase (36) reported that several laboratory strains of nitrate-reducing bacteria reduced iodate in aerobic cultures. They also found that cell extracts of Escherichia coli, which included nitrate reductase activity, reduced iodate. From these results, they proposed that iodate in seawater is reduced by nitrate reductase of marine organisms (36), although this hypothesis has not been investigated further using bacteria. Desulfovibrio desulfuricans ATCC 29577 (7) and Shewanella oneidensis (formerly S. putrefaciens) MR-4 (8) have been reported to reduce iodate under anaerobic conditions, but the enzymes involved in the reaction were not determined. Despite these early studies, there are still many uncertainties about the physiological and biochemical mechanisms of bacterial iodate reduction. For instance, it is not fully understood whether or not bacterial iodate reduction is a dissimilatory process. In addition, little information is available about key enzymes catalyzing the reduction of iodate. These uncertainties result from the limited availability of bacterial isolates with a capacity for iodate reduction. Here, we describe the isolation and characterization of the iodate-reducing bacterium strain SCT. By use of this strain, iodate reductase activity was determined and compared with other reductase activities under aerobic and anaerobic growth conditions. Furthermore, we attempted to grow strain SCT with iodate as the sole electron acceptor in order to assess whether or not the reduction of iodate is a dissimilatory process.
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In anaerobic incubation, 19 ml of the basal medium was dispensed into a 60-ml serum bottle under an N2-CO2 (80:20) gas stream. The bottle was sealed with a thick butyl rubber stopper and an aluminum cap. After the autoclaving, anoxic sterile stock solutions of iodate (KIO3; Wako Pure Chemical Industries, Japan) and electron donor were added to the medium by use of a sterile syringe and needle. Finally, 1 ml of anoxic sediment slurry was inoculated. The sediment was collected from the upper 3 cm of Sagami Bay, Kanagawa, Japan, and the slurry was prepared by suspending the sediment in the anoxic sterile basal medium at 0.05 g (wet weight) ml–1. The incubation under transition conditions was carried out under conditions that were essentially the same as the anaerobic conditions present in the sealed serum bottle, but replacement of air with N2-CO2 gas in the headspace as well as in the liquid phase was omitted. In the transition incubation, resazurin changed color from blue to pink and finally became colorless, indicating that a shift from aerobic to anaerobic conditions actually occurred. In aerobic incubation, the medium was dispensed into a 100-ml Erlenmeyer flask, and the flask was incubated on a rotary shaker at 140 rpm. In both transition and aerobic incubations, 0.17 g liter–1 of K2HPO4 was also added, but NaHCO3 was omitted from the basal medium.
To isolate iodate-reducing bacteria, the slurry incubated with 200 µM iodate for 18 days under the transition conditions was serially diluted and spread on the basal agar medium containing 15 g liter–1 of agar. After aerobic incubation, 26 colonies were removed randomly, purified, and evaluated for their iodate-reducing capacities under the transition growth conditions. Among these, five isolates reduced 200 µM iodate completely within 2 to 3 days. Approximately 500-bp 16S rRNA gene fragments of these isolates were sequenced and aligned. All of these isolates were affiliated with the genus Pseudomonas, and one of the isolates, strain SCT, was chosen for further studies.
Growth conditions for strain SCT.
Cells of SCT were cultured in the basal medium either aerobically in an Erlenmeyer flask or anaerobically in a sealed glass bottle under conditions of an N2-CO2 atmosphere. Iodate (200 µM), nitrate (10 mM), lactate (10 mM), and Casamino Acids (0.01%) were also added, but NH4Cl, NaCl, Na2MoO4·2H2O, and resazurin were omitted from the basal medium. When potential electron donors and electron acceptors were tested, Bacto-tryptone (0.1%) was added instead of Casamino Acids.
Preparation of washed cell suspension.
Cells grown for 24 h as described above were collected by centrifugation (7,000 x g at 4°C for 10 min). After being washed twice with 10 mM potassium phosphate buffer (pH 7.0), the cells were resuspended in the same buffer to achieve an optical density at 600 nm (OD600) of approximately 0.2 (equivalent to 0.14 mg [dry weight] ml–1). After iodate (200 µM) and lactate (10 mM) were added to the suspension, the cells were incubated either anaerobically under conditions of an N2 atmosphere or aerobically.
Preparation and fractionation of crude cell extracts.
For the preparation of the crude extracts, cells grown anaerobically for 24 h were collected, washed, and resuspended in 10 mM potassium phosphate buffer (pH 7.0) to achieve an OD600 of 20. They were disrupted by sonication (Ohtake ultrasonic disintegrator 5202) at 150 W and 100 kHz for 2 min followed by centrifugation (10,000 x g for 10 min at 4°C) to remove cell debris. The soluble fraction, which contained both cytoplasmic and periplasmic proteins, was separated from the membrane fraction by ultracentrifugation (100,000 x g for 1 h at 4°C). The periplasmic fraction was prepared according to the method of Berks et al. (1). Cells were resuspended in a buffer containing 100 mM Tris-HCl (pH 8.0), 3 mM Na2-EDTA, 0.5 M sucrose, and 25 mg ml–1 lysozyme. After incubation at 30°C for 20 min, the periplasmic fraction was separated from the spheroplasts by centrifugation (30,000 x g for 4 min at 4°C). The disruption of spheroplasts, removal of cell debris, and separation of the cytoplasmic fraction from the membrane fraction were carried out as described above.
Enzyme assays.
The reductase activities were assayed spectrophotometrically in a sealed quartz cuvette at 30°C by monitoring the oxidation of reduced methyl viologen (MV;
578 = 9.7 mM–1·cm–1) as an electron donor. The reaction mixture (0.7 ml) contained 50 mM Tris-HCl (pH 7.0), 0.5 mM MV, an appropriate amount of enzyme, and an electron acceptor. In most cases, the electron acceptors were added at a final concentration of 10 mM. Iodate and periodate (IO4–), however, were added at 1 mM, since 10 mM concentrations of these compounds strongly oxidize the reduced MV abiotically. After the reaction mixture was degassed and sparged with N2 gas, the reaction was started by the addition of a small amount of sodium dithionite to give an absorbance of 1.5 to 2.0. One unit (U) of the reductase activity was defined as the amount of enzyme protein required to oxidize 1 µmol of reduced MV per min. The activities were calculated from initial rates of oxidation of MV, and all measurements were corrected for nonenzymatic oxidation of MV by subtracting the rates observed for control samples in which enzyme was omitted from the reaction mixture. In some cases, reduced benzyl viologen (BV;
600 = 14.8 mM–1·cm–1), NADH, and NADPH were used as the electron donors. Protein concentrations were determined by the method of Bradford (2), with bovine serum albumin as a standard protein. Catalase activity was measured spectrophotometrically by monitoring the rate of disappearance of H2O2 (40).
Analytical techniques.
Iodate concentrations were routinely determined colorimetrically according to the method of Truesdale and Moore (35) with some modifications. First, 2% (wt/vol) sulfamic acid (40 µl) and 2N HCl (20 µl) were added to 400 µl of the culture supernatant. After mixing, 0.1% (wt/vol) potassium iodide (400 µl) was added to yield triiodide (I3–), and finally, 0.1% (wt/vol) soluble starch (400 µl) was added to yield a purple iodine-starch complex, which was immediately measured at 525 nm. The detection limit of this method was approximately 5 µM. Iodide levels were determined by ion chromatography (IC) in combination with inductively coupled plasma mass spectrometry (IC-ICP/MS) as described elsewhere (26). Iodate can also be determined by this method, and the results were very similar to those quantified colorimetrically. The detection limit of this method was approximately 10 nM iodide. The nitrite concentration was determined by diazotizing with sulfanilamide followed by coupling with N-(1-naphthyl)ethylenediamine dihydrochloride (25). The nitrate concentration was determined by the same method after nitrate was reduced to nitrite by hydrazine sulfate (13, 25).
Sequencing of 16S rRNA genes.
Genomic DNA was isolated by the method of Hiraishi (16). The 16S rRNA gene was processed using conditions and reagents that were described previously (19). The obtained 16S rRNA gene sequences were subjected to a BLAST search (http://www.ncbi.nlm.nih.gov/BLAST/) to determine 16S rRNA gene similarities. The retrieved sequences were also aligned using the CLUSTAL W program, version 1.6 (32).
Nucleotide sequence accession numbers.
The 16S rRNA gene sequences determined in this study have been deposited in the DDBJ/EMBL/GenBank databases under accession numbers AB284047 through AB284051.
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FIG. 1. Iodate reduction in the sediment slurry incubated under the aerobic (A), anaerobic (B), and transition (C) conditions. The sediment was incubated with iodate at 200 µM and electron donors at 10 mM. The results for samples incubated without electron donors (No donor), and autoclaved samples incubated with lactate (Killed + lactate), are also shown. The experiment was carried out twice, and similar results were obtained. Results from one representative experiment are shown.
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Iodate reduction by growing cultures and washed cells of strain SCT.
SCT was grown aerobically or anaerobically (under denitrifying conditions) with a 200 µM concentration of iodate (Fig. 2). In the aerobic culture, no significant reduction of iodate was observed. On the other hand, iodate was reduced completely within 12 h in the anaerobic culture. At the end of the cultivation, iodide in the anaerobic culture was quantified by IC-ICP/MS. The result showed that iodide was predominantly produced from iodate at a concentration of 222 µM.
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FIG. 2. Iodate reduction by strain SCT grown under aerobic or anaerobic conditions. Cells were grown in the basal medium containing 10 mM lactate, 10 mM nitrate, and 200 µM iodate. Growth (A), iodate reduction (B), and concentrations of nitrate and nitrite in the anaerobic culture (C) are shown. The error bars indicate standard deviations of the means of the results obtained with triplicate cultures.
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FIG. 3. Iodate reduction by a washed cell suspension of strain SCT. Cells were pregrown on lactate with (solid symbols) or without (open symbols) 200 µM iodate. After the cultivation, the cells were washed and resuspended in potassium phosphate buffer containing 10 mM lactate and 200 µM iodate. The final cell biomass in each experiment was 2.8 mg (dry weight). Aerobically grown cells were incubated aerobically (squares), and anaerobically grown cells were incubated anaerobically (circles). Iodide production by the cells grown anaerobically with iodate is also shown (solid triangles). The experiment was carried out twice with similar results, and results from one representative experiment are shown. Similar results were also obtained when malate, succinate, acetate, or glycerol was used as the electron donor.
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TABLE 1. Reductase activities in the crude extracts of strain SCTa
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TABLE 2. Localization of iodate reductase in cell fractions of strain SCTa
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FIG. 4. Growth of strain SCT with iodate as the sole electron acceptor. Cells were grown anaerobically with 10 mM malate as the electron donor and 3 mM iodate as the sole electron acceptor. Bacto-tryptone (0.1%) was also added to the medium. (A) Growth in the presence and absence of iodate. (B) Iodate reduction and concomitant production of iodide. Iodate concentrations in the uninoculated medium (no cells), and in the medium inoculated with heat-killed cells (killed), are also shown. The experiment was carried out twice, and similar results were obtained. Results from one representative experiment are shown.
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Phylogenetic analysis revealed that SCT is most closely related to P. stutzeri. Since P. stutzeri is generally known as a denitrifying bacterium (21), it is possible that nitrate reductase is involved in the reduction of iodate by SCT, as has been hypothesized by Tsunogai and Sase (36). However, our results clearly indicated that iodate reductase of SCT is induced only when the bacterium is grown with iodate under the anaerobic conditions. By contrast, the levels of nitrate reductase in the cells grown with and without iodate were similar (Table 1). On the basis of these results, we suggest that nitrate reductase of SCT does not play a significant role in iodate reduction. SCT was also closely related to a dissimilatory chlorate-reducing bacterium, P. chloritidismutans. Since iodate (IO3–) is a structural analogue of chlorate (ClO3–) and since SCT showed significant activity with respect to chlorate reductase (Table 1), one may suppose that SCT is a dissimilatory chlorate-reducing bacterium and that it reduces iodate by means of chlorate reductase. However, SCT was not able to grow with chlorate as the sole electron acceptor and it possessed nitrate reductase, both of which were properties distinct from those of P. chloritidismutans (42). In addition, Wolterink et al. (43) showed that chlorate reductase of P. chloritidismutans is a cytoplasmic enzyme and that the enzyme reduces chlorate and bromate but not iodate. These results indicate that iodate reductase of SCT is different from chlorate reductase of P. chloritidismutans. Considering the fact that chlorate-reducing activity is a general feature of membrane-bound respiratory nitrate reductase in many bacteria (24, 50), chlorate reductase activity found in SCT is probably attributable to its nitrate reductase.
Previously, Farrenkopf et al. (8) inoculated 3 x 106 cells ml–1 of S. oneidensis MR-4 into an anaerobic medium containing 250 µM iodate as the sole electron acceptor and found that the number of cells increased to 8 x 106 ml–1 after complete reduction of iodate. Until now, however, there have been no reports of bacterial growth with millimolar concentrations of iodate as the sole electron acceptor. In this study, we found that SCT was capable of growing with 3 mM iodate as the sole electron acceptor and that the number of cells increased from 5.6 x 105 to 2.9 x 108 (Fig. 4). In addition, enhanced activity by iodate reductase was observed in the cells grown with 3 mM iodate. These results strongly suggest that SCT can couple the oxidation of organic carbon to the reduction of iodate and that iodate reductase is an inducible enzyme playing a key role in the reduction of iodate. Considering the high redox potential of iodate reduction (IO3–/I–; E0 = +1.539 V), it would not be surprising if iodate reduction couples to the energy-conserving electron transport pathway in SCT. However, at this stage, details of the energetic properties are not yet clear. Further study is needed to determine the reaction stoichiometry, the type of cytochromes in the iodate-grown cells, and the possible intermediate compounds in the process.
Our results obtained in this study indicate that dissimilatory iodate-reducing bacteria are present in nature. Although iodide is a highly soluble and mobile species, iodate is relatively immobile in the environment because of its sorption on several minerals contained in soils and sediments (49). Thus, bacterial reduction of iodate can affect the mobility of stable iodine (127I) as well as radioactive iodine (129I). Since 129I is one of the most hazardous radionuclides released from reprocessing plants (3, 17, 23, 27, 30) and since it could possibly be leaked from ground storage of nuclear waste, dissimilatory reduction of iodate by bacteria should be considered in predicting the environmental risk of 129I.
Published ahead of print on 20 July 2007. ![]()
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