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Applied and Environmental Microbiology, September 2007, p. 5857-5864, Vol. 73, No. 18
0099-2240/07/$08.00+0 doi:10.1128/AEM.00072-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Natural Sciences, Mid Sweden University, SE-851 70 Sundsvall, Sweden,1 Department of Cell and Molecular Biology, Göteborg University, Box 462, SE-405 30 Göteborg, Sweden2
Received 12 January 2007/ Accepted 17 July 2007
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Concerning bacteria, there are several reports on siderophore production by Pseudomonas spp. (1, 3, 4, 19). More than 50 structurally related siderophores, i.e., pyoverdins, produced by the fluorescent Pseudomonas spp., especially Pseudomonas fluorescens and Pseudomonas aeruginosa, have been characterized (3). All pyoverdins emit yellow fluorescent light due to the presence of a 5-amino-2,3-dihydro-8,9-dihydroxy-1-H-pyrimido-quinoline-carboxylic chromophore, to which a peptide chain and a carboxyl chain are attached (1, 3). Nonfluorescent Pseudomonas has also been shown to produce siderophores, such as ferrioxamine E, also called nocardamine (Fig. 1), which was produced by one strain of Pseudomonas stutzeri (19). In addition to ferrioxamines, the P. stutzeri strain KC produced a smaller siderophore, i.e., pyridine-2,6-bis(thiocarboxylic acid) (35). Conversely, a catecholate-type siderophore was shown to be produced by another strain of P. stutzeri, which did not produce any hydroxamate siderophores (4).
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FIG. 1. Structures, molecular masses (mw), and stability constants (Ks) of ferric complexes of the three ferrioxamines: ferrioxamine B (B), ferrioxamine E (E), and ferrioxamine G (G) (5, 18).
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A study from 2004 shows that P. stutzeri growing aerobically in the presence of uranium-containing shale leached Fe, Mo, V, and Cr from the shale material (17). More recently it was shown that the supernatant of aerobically and anaerobically cultured P. stutzeri was able to increase the partitioning of added Fe, Pm, Am, and Th into the aqueous phase in samples where quartz sand was used as a solid surface (16). Aerobic supernatants maintained 60% or more of the added metals in solution, while anaerobic supernatants were best at maintaining Am in solution, reaching a value of 40% in solution. The increased partitioning to the aqueous phase in the presence of the supernatants was ascribed to the production of organic ligands. Supernatants of both aerobically and anaerobically grown P. stutzeri strain CCUG 36651 yielded a positive response on the universal siderophore assay, the CAS assay (16). This assay is based on ligand competition for iron bound to the colored chrome azurol complex (25, 30).
In this study, siderophore production by P. stutzeri strain CCUG 36651 was investigated using mass spectrometry (MS) and liquid chromatography (LC) followed by mass spectrometric detection. Electrospray ionization mass spectrometry (ESI-MS) and electrospray ionization tandem mass spectrometry (ESI-MS/MS) are useful tools in characterizing siderophores such as ferrioxamines (10, 13, 14, 28, 31). In order to detect iron(III)-chelating compounds, the ferric iron can be replaced by gallium(III) through ascorbate-mediated reduction of iron(III) (8, 20). In mass spectra, gallium-bound substances are easily recognized due to the characteristic isotope pattern of gallium, where the intensity of the 71Ga signal is about 66% of that of the 69Ga signal. The use of ESI provides so-called soft ionization; thus, information about the molecular weight is obtained. However, by employing MS/MS, fragmentation is achieved, providing more information about the compound structure.
In order to verify the chemical difference between the siderophores found by ESI-MS, chromatographic separation was performed. In this case, one reversed-phase C18 column and one column containing a porous graphitic carbon (PGC) stationary phase were used. The separation mechanism of PGC is a combination of hydrophobic interactions, as in C18, and electrostatic interactions between
-electrons. In order to detect substances at low concentrations, column-switched capillary chromatography with MS detection was used. The detection limits of the combined LC-MS/MS system used in this study are in the range of 1 to 5 nM for hydroxamate siderophores of the ferrichrome and ferrioxamine families (9). In order to facilitate analysis of lower concentrations of ferrioxamines, natural water samples were preconcentrated by solid-phase extraction (SPE), resulting in minimum detectable concentrations in the range of 0.02 to 0.1 nM, depending on the initial sample volume.
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cm–1 water purified by a MilliQ-purification system (Millipore). For cultivation, analytical-grade K2HPO4, NH4Cl, MgCl2 · 6H2O, CaCl2 · 2H2O, MgSO4 · 7H2O, KNO3, NaOH, Na-lactate (50%), and cysteine-HCl, obtained from Merck, were used. For siderophore extraction and characterization, the following materials were used. Formate buffer (pH 4.0; 11 mM) was prepared in water using formic acid of analytical grade and ammonium formate of analytical grade (Sigma-Aldrich). Methanol and acetonitrile were of high-performance-LC grade (Chromasolv; Sigma-Aldrich). Reference siderophore solutions were prepared using iron-free desferrioxamines, i.e., desferrioxamines E and G (EMC Microcollections, Tübingen, Germany) and desferrioxamine B (Sigma). Iron(III) complexes were prepared by addition of FeCl3 (analytical grade; Merck), while for exchange to gallium(III), Ga(NO3)3 · H20 (>99.9%) and ascorbate, i.e., sodium L-ascorbic acid (99%) (both from Acros Organics), were used.
Media, cultivation conditions, and collection of bacterial supernatants.
Pseudomonas stutzeri (CCUG 36651 [www.ccug.se]), which was isolated from borehole KAS03 at a 626-m depth in the Äspö Hard Rock Laboratory, was grown in batch cultures under aerobic and anaerobic conditions. The basal salt solution of both the aerobic and the anaerobic medium had the following composition: 0.06 mM K2HPO4, 5.6 mM NH4Cl, 0.5 mM MgCl2, 0.7 mM CaCl2, 0.4 mM MgSO4, and 11 mM KNO3. Lactate was added to the autoclaved and cooled medium to be used for aerobic cultures to a final concentration of 4.4 mM, and the pH was adjusted to 8 using 1 M NaOH. The aerobic medium was dispensed in 500-ml Erlenmeyer flasks with 200 ml of medium in each flask. The anaerobic medium was cooled under an N2 atmosphere after autoclaving, and lactate was added to a final concentration of 4.4 mM. Furthermore, the reductant cysteine-HCl was added to a final concentration of 1.5 mM and the pH was adjusted to 8 using 1 M NaOH. The anaerobic medium was dispensed by applying an overpressure to the medium vessel and allowing the medium to flow via an outlet tube and a syringe into serum bottles with an N2 atmosphere. A 100-ml aliquot of medium was dispensed into each bottle. Aerobic flasks and anaerobic serum bottles were inoculated with approximately 100 µl of P. stutzeri growing actively in an aerobic or anaerobic medium of the same type as outlined above. Cultures were grown for 1 week at room temperature on an orbital shaker (Labotron), after which the contents of the multiple flasks were pooled in one aerobic and one anaerobic culture solution. Each culture solution was then centrifuged at 8,000 x g for 10 min in a Sorvall RC-5B Superspeed centrifuge (Thermoelectron Corporation). Finally, each supernatant was suction filtered (Filtropur BT50, 0.2 µm; Sarstedt, Landskrona, Sweden) into a sterile bottle, and the resulting solution was subdivided into 50-ml polypropylene (PP) tubes (Sarstedt) and frozen pending analysis.
Natural water samples from 450 m underground at the Äspö Hard Rock Laboratory.
Four different samples of groundwater were collected at the Äspö Hard Rock Laboratory, which is located on the island of Äspö, southeast Sweden (26). Groundwater was circulated at a flow rate of 30 ml/min via a borehole (KJ0052F01) at the microbe site, located 450 m below ground, via polyether ketone tubing into three circulations (24). The circulation systems were made of polyether ketone and polyvinylidine difluoride plastic; metal was not in contact with the circulating groundwater. Each circulation had four flow cells for attachment and growth of microorganisms (biofilms). The total surface area was 2,112 cm2 per circulation. The groundwater was anaerobic and reduced with populations of sulfate-reducing bacteria, with methanogens and acetogens among the dominating species. The groundwater was circulated through all three circulations set in a series under ambient pressure and temperature, i.e., 30 bars and 17°C. After 1 month, it was collected without coming in contact with air into butyl-rubber stopper-sealed 120-ml sterile serum bottles with an N2 atmosphere. Ferric iron (1.4 µmol) was added to 625 ml of water from the circulation (KJ0052F01) before SPE.
After 6 months of circulation via the borehole, the three circulations were isolated from each other and from the borehole and became closed circulating systems. There was 5,000 ml groundwater circulating at 30 ml/min under in situ conditions in each circulation. Biofilms had developed in the flow cells during the 6 months before closure. The total number of attached and unattached cells in each circulation at closure was approximately 5 x 109 cells. To the first circulation, acetate was added to a concentration of 140 mg/liter; to the second, H2 and CO2 were added to final concentrations of 20 ml/liter and 4 ml/liter, respectively; and the third circulation was used as a control, without any addition. After 3 months of continued circulation under closed conditions, water from each circulation was collected in 50-ml polypropylene tubes from Sarstedt. The tubes were frozen immediately after sampling. To 50 ml of each sample, 0.2 µmol of ferric iron was added before extraction by SPE. At this stage all three circulations had increased their numbers of attached and unattached cells about three times; thus, there was a significant growth in the water and also on the surfaces.
Purification of siderophores in cultures by SPE.
Each SPE cartridge (Sep-Pak C18+, 360 mg; Waters Co.) was activated and cleaned prior to use, first by 10 ml of methanol and then by 2 x 10 ml of milliQ water. Metal-bound siderophores were obtained by addition of either 1 µmol iron(III) or 1 µmol gallium(III), and the sample was drained through the SPE column. Salts were rinsed out by 5 ml of milliQ water, after which the siderophores were eluted by 13 ml of methanol that was subsequently evaporated by means of rotary evaporation under vacuum. The residue was collected, and aqueous ammonium formate buffer (pH 4, 11 mM) was added to a final sample volume of 1.0 ml. The sample was filtered (Millex-GV, 0.22 µm; Millipore) before analysis. Prior to MS and MS/MS experiments, methanol was added to a final concentration of approximately 20% (vol/vol). The extracted sample volume of the anaerobic culture was increased to 100 ml using two cartridges instead of 25 ml using one cartridge as with the aerobic culture.
Exchange of iron to gallium bound to siderophores.
Since iron was not removed from the bacterial culture medium, an ascorbate-mediated exchange of residual iron to gallium was performed in order to ensure that the siderophores were complexed by gallium. To the extracted sample, 1 µmol of ascorbate, 1 µmol of gallium(III), and 20 µmol of formic acid were added, and the mixture was ultrasonicated for 30 min. The sample was then purified by SPE using one cartridge and the same procedure described above for extraction of siderophores from culture samples.
Characterization of siderophores by ESI-MS and ESI-MS/MS.
The molecular masses of the extracted siderophores bound to iron(III) or gallium(III) were determined by ESI-MS, while structural information was obtained by ESI-MS/MS. The instrument used was a triple-quadrupole mass spectrometer (Sciex API 3000; Applied Biosystems) operated in positive ESI mode. Direct infusion at a flow rate of 5 µl/min was performed using a syringe pump (Harvard Apparatus). The mass spectrometer was tuned by direct infusion of 0.5 µM standards of ferrioxamine B, E, and G, resulting in the following MS settings: ion spray potential, 5,000 V; declustering potential, 75 V; focusing potential, 250 V; entrance potential, 10 V. These settings were also used for the MS/MS experiments, where the cell exit potential was optimized to 10 V and the collision gas flow to 7 (arbitrary units of N2), and the collision energy was varied in the range of 30 to 70 V. Reference ESI-MS and ESI-MS/MS spectra were collected using the same ferrioxamine standard solutions. ESI-MS spectra were recorded in the ranges of 200 to 900 atomic mass units (amu) and 200 to 1,600 amu, while ESI-MS/MS spectra were collected between 40 and 700 amu.
LC-ESI-MS and LC-ESI-MS/MS analysis of siderophores.
Separation of siderophores in extracted supernatants was performed by capillary LC followed by ESI-MS or ESI-MS/MS detection. The LC system was composed of one microflow pump (Perkin Elmer 200 Micro Series), an autoinjector equipped with a thermostat (Agilent 1100), and a triple-quadrupole mass spectrometer (Sciex API 3000). Two different columns were used, i.e., one HyPurity C18 column and one Hypercarb PGC column, both having the dimensions 100 by 0.50 mm, 5 µm, and manufactured by Thermo Hypersil-Keystone. Elution of both columns was performed for 40 min at a flow rate of 10 µl/min with a mobile phase containing 5% (vol/vol) acetonitrile in 11 mM ammonium formate buffer, pH 4.0. The injection volume was 2 µl, and the samples were kept at 4°C during analysis. The mass spectrometer was operated in positive ESI scan mode between m/z 550 and 750 amu.
In order to analyze natural water samples on-line, preconcentration by means of column switching was employed. The previously described chromatographic system was used with the further addition of one Perkin Elmer 200 series pump for gradient elution of the analytical column (HyPurity C18, 100 by 0.50 mm, 5 µm) and one microflow pump (Shimadzu LC-10ADvp) for elution of the precolumn (HyPurity Aquastar C18, 30 by 0.50 mm, 5 µm; Thermo Hypersil-Keystone). All mobile phases were prepared by mixing acetonitrile with 11 mM ammonium formate buffer, pH 4.0. The precolumn was eluted with 0.5% (vol/vol) acetonitrile at a flow rate of 10 µl/min. Gradient elution of the combined precolumn and analytical column was achieved using two mobile phases containing 5% (vol/vol) and 50% (vol/vol) acetonitrile at a total flow rate of 10 µl/min. A sample volume of 50 µl was injected onto the precolumn where the siderophores were adsorbed and concentrated, while salts were washed out. After 10 min, column switching was performed by means of a 10-port switch valve (VICI EPC10W; Valco Instruments), and the adsorbed siderophores were transferred from the precolumn to the analytical column by a mobile phase containing 5% (vol/vol) acetonitrile at a flow rate of 10 µl/min. After a total elapsed time of 35 min, the acetonitrile content of the mobile phase flowing through both columns was linearly increased from 5% (vol/vol) to 40% (vol/vol) during the following 20 min. The mobile-phase composition was maintained at 40% (vol/vol) acetonitrile for another 10 min until a total elapsed run time of 65 min, when the precolumn was decoupled from the analytical columns and both columns were regenerated by their initial mobile phases for 60 min prior to the next injection. Detection of two fragments of the four siderophores produced by the aerobically grown P. stutzeri was performed by multiple reaction monitoring of the proton adducts of the ferric complexes on a triple-quadrupole mass spectrometer (Sciex API 3000) operated in positive ESI mode. In addition, detection was also performed in positive scan mode between m/z 550 and 750 amu.
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FIG. 2. ESI-MS spectra of extracts of aerobic cultures of P. stutzeri with iron(III) amendment (a) where the peak at 654 amu was ferrioxamine E and the peak at 640 amu was the ferrioxamine E analogue called unknown 1 (D2). After replacement of iron(III) by gallium(III) (b), gallium desferrioxamine produced peaks at m/z 667 and 669 (proton adduct), 684 and 686 (ammonium adduct), 689 and 691 (sodium adduct), and 705 and 707 amu (potassium adduct). The gallium complex of the unknown siderophore called unknown 1 produced peaks at m/z 653 and 655 amu (proton adduct) and 675 and 677 (sodium adduct), while the potential ammonium adduct (expected at 670 and 672 amu) and potassium adduct (expected at 691 and 692 amu) were overlapped with adducts of gallium desferrioxamine E. The peaks at 611 and 625 amu were not affected by replacement of iron with gallium.
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FIG. 3. Extracted ion chromatograms of P. stutzeri cultivated under aerobic conditions with amendment of ferric iron (a) or gallium (b), showing peaks of four siderophores. In the ferric extract (a), the ferric complex of unknown 2 (unk. 2) was detected at 8.6 min and m/z 626 amu, ferrioxamine G (FOG) at 10.7 min and m/z 672 amu, unknown 1 (unk. 1) at 11.8 min and m/z 640 amu, and ferrioxamine E (FOE) at 16.3 min and m/z 654 amu. After replacement of iron with gallium, the same siderophores bound to both 69Ga and 71Ga were detected, i.e., unknown 2 at 7.6 min and m/z 639 and 641 amu, gallium desferrioxamine G at 9.5 min and m/z 685 and 687 amu, unknown 1 at 10.7 min and m/z 653 and 655 amu, and gallium desferrioxamine E at 15.7 min and m/z 667 and 669 amu. For all peaks in panel b, the lowest signal corresponds to the 71Ga isotope while the most intense signal is produced by the 69Ga isotope. Separation conditions: HyPurity C18 column, 100 by 0.5 mm, eluted with 10 µl/min of a mobile phase containing 5% acetonitrile in formiate buffer (pH 4.0), 11 mM.
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Partial characterization of siderophores by ESI-MS/MS.
Fragmentation of gallium(III)-bound siderophores in the extract of aerobically grown P. stutzeri was compared with reference spectra of gallium-bound desferrioxamine E and with those of the linear desferrioxamines, i.e., B and G (Table 1). In order to facilitate fragment identification, ferric ferrioxamine complexes of the reference siderophores were also analyzed. No difference in fragmentation patterns was noted between the gallium- and iron-bound ferrioxamines. However, all fragments produced by a neutral loss of 300 amu or less were shown to contain the metal. The main fragments produced by metal-chelated desferrioxamine B were produced by loss of 118, 200, and 217 amu, but minor fragments resulting from loss of 17, 18, 100, 146, and 160 amu were also observed, as shown for Ga-desferrioxamine B (Fig. 4d). The main fragments correspond to an N-terminal neutral loss of NH2
(CH2)5
NH(OH) (–118), NH2
(CH2)5
N(OH)
CO
;CH2
;CH
CO (–200), and NH2
(CH2)5
N(OH)
CO
(CH2)2
CO
NH2 (–217), as noted before by Groenewold et al. (14). C-terminal cleavage produced the neutral fragment resulting from loss of 160 amu, i.e., of CH3
CO
N(OH)
(CH2)5
NH2, also observed by Groenewold et al. (14), resulting in a fragment at m/z 467 in the case of Ga-desferrioxamine B. The fragmentation pattern of Ga-desferrioxamine G showed similarities to that of Ga-desferrioxamine B (Table 1), i.e., the fragments produced by loss of 17, 18, 118, 146, and 200 amu were recognized as in the Ga-ferrioxamine B spectrum. In the Ga-desferrioxamine G spectrum, however, the main fragment was produced by neutral loss of 100 amu, i.e., by loss of C-terminal COOH
CH2
CH
CO. Further C-terminal cleavage of Ga-desferrioxamine G by loss of 218 amu (COOH
(CH2)2
CO
N(OH)
(CH2)5
NH2) resulted in a fragment detected at 467 amu, which is also found in the spectrum of Ga-desferrioxamine B when the part of the molecule differing between ferrioxamine B and G has been cleaved off. The fragmentation pattern of cyclic ferrioxamine E differed from this (Table 1; Fig. 4a). In contrast to the linear ferrioxamines, a number of fragments formed by loss of 35 to 100 amu were seen by loss of 18 (H2O), 36 (2 H2O), 44 (CO2), 46 (HCOOH or H2O plus CO), and 63 (H2O plus CO2 plus NH3) amu. The fragment formed by loss of 100 amu corresponds to loss of C5H12N2.
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TABLE 1. ESI-MS/MS fragmentation of extracted gallium-bound siderophores for P. stutzeri grown under aerobic conditions and for both iron(III)- and gallium-bound reference substances, ferrioxamines B, G, and E, obtained at a collision energy of 40 eV
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FIG. 4. ESI-MS/MS spectra of Ga-chelated siderophores from aerobically grown P. stutzeri and reference substances. The fragmentation pattern of the cyclic ferrioxamine Ga-desferrioxamine E (a) differs from those of the linear ferrioxamines Ga-desferrioxamine B (d) and Ga-desferrioxamine G (c). The unknown siderophore (b) fragments in the same way as ferrioxamine E and is thus supposed to be cyclic. Fragmentation of the proton adduct was performed at a collision energy of 40 eV. Black lines indicate the 69Ga isotope, while gray lines indicate the 71Ga isotope. The spectra obtained for Ga-desferrioxamine E and Ga-desferrioxamine G from the aerobic cultures of P. stutzeri were matched by reference substance spectra.
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Evaluation of siderophore production in anaerobically cultured P. stutzeri.
For P. stutzeri grown under anaerobic conditions and analyzed by ESI-MS, no peak with the gallium isotope pattern could be observed in the m/z range of 200 to 800 amu, although the extracted volume was increased from 25 to 100 ml. None of the siderophores produced under aerobic conditions were found in either gallium- or iron-amended extracts. The same result was obtained when the sample was analyzed by LC-ESI-MS. A visual difference between the two culture conditions was noted during the extraction procedure, since the extract of the aerobic culture was pale yellow while the extract of the anaerobically grown P. stutzeri was colorless. Ferric hydroxamates absorb light between 420 and 440 nm and hence give the sample a yellow color (15). In conclusion, no evidence of siderophore production by anaerobically grown P. stutzeri was found.
Analysis of natural water samples by LC-ESI-MS and LC-ESI-MS/MS.
Four natural water samples from the Äspö Hard Rock Laboratory were extracted, and the presence of the three cyclic ferrioxamines shown to be produced by P. stutzeri under aerobic conditions was monitored by chromatographic separation. In order to maintain maximal sensitivity, only ferric extracts were analyzed using the C18 column in combination with on-line preconcentration, lowering the detection limit by a factor of approximately 10 (9). Mass spectrometric detection was performed in the multiple-reaction-monitoring mode. The three cyclic ferrioxamines were searched for using two of the major fragments formed by the loss of 100 and 117 amu, i.e., at m/z 654.4
537.4 and 654.4
554.4 for ferrioxamine E, 640.4
523.4 and 640.3
540.4 for unknown 1, and 626.4
509.3 and 626.4
526.3 for unknown 2. None of the siderophores produced by aerobically cultured P. stutzeri were found in any of the extracts of natural water samples. The lowest detectable concentration in these samples before extraction would be approximately 0.1 nM for the 50-ml samples, while the corresponding limit of detection was approximately 0.02 nM for the 625-ml sample.
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The structures of the four ferrioxamines were further elucidated by MS/MS. Ferrioxamines E and G were identified by comparison with spectra obtained for reference substances. Additionally, fragments formed by neutral loss were identified for all four ferrioxamines. Although several other researchers have presented fragmentation pathways for ferrioxamines, most of the work has been done on desferrioxamines or on the linear ferrioxamine B (11, 12, 14, 31). The chelation of a metal was shown to alter the fragmentation of ferrioxamine B (14). Moreover, the fragmentation of cyclic ferrioxamines observed in this work was different from that of linear ferrioxamines, although the fragmentation mechanisms have been suggested to be similar (11). The cyclic ferrioxamines were more stable, i.e., less fragmentation occurred at a given collision energy. Fragmentation of a cyclic ferrioxamine requires two bonds to be broken, which is in contrast to the linear ferrioxamines, where only one bond needs to be broken. Thus, the fragmentation patterns of cyclic ferrioxamines at moderate collision energies were characterized by neutral loss of a number of small fragments, such as H2O and CO2, while the linear ferrioxamines, in addition to the loss of NH3 and H2O, also showed neutral loss of larger fragments. In general, fragmentation often occurred by cleavage at the hydroxamate group and transfer of a hydroxyl unit from the hydroxamate nitrogen to the attached carbonyl, as proposed by Groenewold et al. (14). The structures of ferrioxamines G and E were verified, while the two ferrioxamine E analogues were shown to contain diaminobutane instead of diaminopentane. The two ferrioxamine E analogues are likely to be ferrioxamine D2 and ferrioxamine X1, the latter of which has been identified by Feistner et al. (10). The concentration of ferrioxamines in the ferric amended culture of aerobically grown P. stutzeri was in the lower micromolar range. Although ferrioxamine E was the dominating siderophore, the amount of ferrioxamine D2 was about 38% of that of ferrioxamine E. Bacterial production of ferrioxamines E and G has been shown to be accompanied by production of ferrioxamine E and G analogues having pentane residues replaced by propane or butane (10, 28). In the anaerobic culture of P. stutzeri studied here, no traces of ferrioxamines or any other gallium(III)-chelating compounds were found.
The capability of aerobically and anaerobically grown P. stutzeri to solubilize actinides into the aqueous phase has been ascribed to production of biological ligands. However, the supernatant of aerobically grown P. stutzeri was more effective in maintaining metals in the aqueous phase than the anaerobically produced supernatant (16). Here, the presence of siderophores in the aerobic cultures was indeed verified, while the reason for the observed solubilizing effect provided by anaerobically grown P. stutzeri is still unknown.
The circulations at Äspö Hard Rock Laboratory were set up to investigate how anaerobic, subsurface populations of microorganisms developed as a function of addition of different electron donors, i.e., hydrogen and acetate. Although the main purpose of this experimentation differed significantly from that of the work presented here, it offered an opportunity to investigate the possible production of ferrioxamines and gallium-chelating compounds under unique conditions not available before. The circulating systems were free of metal in contact with the groundwater. It was speculated that the lack of contact with the geological system in the aquifers, with its availability of most elements in the periodic system, including iron, could have induced a production of siderophores in the closed circulations. However, the uncertainty in this speculation was that the anaerobic groundwater show an array of dissolved trace metals, including iron(II), which may have been sufficient for the growth observed. The ferrioxamines produced by P. stutzeri under aerobic conditions were not found in the natural water samples from the Äspö Hard Rock Laboratory, irrespective of the circulation treatment, at concentrations above the detection limits. The detection limits were 0.1 nM and 0.02 nM depending on sample volume. Similarly, no gallium-complexing compound was detected. This suggests that the metal-complexing compounds searched for were not produced under the conditions investigated.
The information gained from the deep groundwater investigation is valuable with respect to the safety analyses of future repositories for spent nuclear fuel. High concentrations of the complexing compounds in question would enhance the transport of several radionuclides because many radionuclides combine with siderophores as discussed in the introduction. Of course, the results here represent only a few of many possible conditions in and around a repository, but the first steps have been taken with respect to method development in the survey of deep groundwater environments for the presence of microbially produced complexing compounds. Future investigations should be expanded to search for complexing compounds produced by fungi in the near and far fields of a repository. Fungi have been found in groundwater (7), and they are present in the bentonite clay to be used as backfill and buffer (27). A larger variety of groundwater than investigated here should also be scanned for complexing compounds, and the array of methods for their detection may need to be expanded.
Conclusions.
In this study, the P. stutzeri strain CCUG 36651 was shown to produce four ferrioxamine siderophores under aerobic growth conditions. Of these, two were shown to be ferrioxamines E and G, while the other two were suggested to be ferrioxamines D2 and X1. In contrast, none of these ferrioxamines produced were found to be produced under anaerobic laboratory conditions, nor were they found in deep groundwater from the Äspö Hard Rock Laboratory. This is, to our knowledge, the first study that has analyzed anaerobic cultures or has investigated anaerobic deep groundwater samples specifically for the presence of siderophores.
Published ahead of print on 3 August 2007. ![]()
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