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Applied and Environmental Microbiology, November 2007, p. 6768-6775, Vol. 73, No. 21
0099-2240/07/$08.00+0 doi:10.1128/AEM.01393-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Centre of Microbial and Plant Genetics, Katholieke Universiteit Leuven, Kasteelpark Arenberg 20, 3001 Leuven, Belgium
Received 22 June 2007/ Accepted 29 August 2007
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In comparative studies, L. rhamnosus GG performs well in in vitro adherence experiments with epithelial cells (48) and mucus (47). In vivo, L. rhamnosus GG is able to adhere to the human intestinal mucosa and to persist for more than 1 week after oral intake by healthy adults (1). Moreover, oral administration of L. rhamnosus GG to pregnant women has been reported to result in colonization of their infants for up to 24 months of age (39). Additionally, L. rhamnosus GG is also able to colonize the mouth and can be cultured from saliva for 2 weeks after ingestion (30). This colonization capacity was suggested to be related to the reported beneficial effect of L. rhamnosus GG on the clinical development of dental caries in children (33). Although L. rhamnosus GG was originally isolated from humans, it is also able to colonize the digestive tract of germfree C3H mice (19). L. rhamnosus GG was found to be associated with the mucosa of both the stomach and the intestine of these mice, and this association increased from the proximal to the distal intestine (19).
Many adherent bacteria occur in natural environments as surface-attached biofilms, where they are contained within a self-produced extracellular matrix that protects them against hostile environmental conditions (6, 26). Biofilms also play a role in the intimate relationship between the human body and its resident microbes, for example, in the gut (26). In this study, we investigated the impact of a number of environmental and genetic factors on L. rhamnosus GG biofilm formation. Furthermore, we compared the biofilm formation capacity of L. rhamnosus GG with those of related Lactobacillus strains.
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TABLE 1. Bacterial strains used in this study
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Monitoring bacterial growth in suspension.
Lactobacillus cultures were grown overnight in MRS medium, washed with PBS, brought to equal cell densities (5 x 108 CFU/ml), and diluted 15,000-fold in 300 µl fresh medium. Three replicates of each 300-µl culture were inoculated into the wells of sterile Honeycomb plates. These plates were incubated at 37°C with continuous shaking, and the OD at 600 nm (OD600) was measured every 30 min in a Bioscreen C microbiology workstation (Labsystems Oy, Zellik, Belgium). For each time point, the average OD was calculated from three independent measurements.
EPS isolation and quantification.
A protocol was followed to differentiate bound exopolysaccharide (EPS-b) from EPS released into the culture medium (EPS-r). EPS-r was precipitated from culture supernatant with ethanol, while EPS-b was first extracted from the bacterial cells with 0.05 M EDTA prior to ethanol precipitation as previously described (45). To compare EPS production in different culture media, EPS amounts were expressed as the amount of equivalents of glucose produced per 109 CFU. As a negative control, EPS content of sterile growth medium was assessed. Each experiment was repeated at least three times.
DNA manipulations.
Routine molecular biology techniques were performed according to standard procedures (38). Restriction and modifying enzymes (from New England Biolabs) were used as recommended by the manufacturer. Plasmid DNA was prepared from Escherichia coli cells by QIAGEN miniprep kits. Chromosomal DNA and plasmid DNA were isolated from L. rhamnosus GG as previously described (9).
Cloning of the L. rhamnosus GG wzb gene.
Primers Pro-0005 (5'-AGTTGATTAATACCGCGACAACAA-3') and Pro-0058 (5'-GAAGGGGAACTGAATGATGATTGATG-3') were designed to identify the wzb gene of L. rhamnosus GG based on the published wzb sequence of the closely related strain L. rhamnosus ATCC 9595 (NCBI accession no. AY659976) (34). The PCR product was cloned into pCRII-TOPO vector (Invitrogen), resulting in plasmid pCMPG5921, and sequenced. After BLASTx analysis, a 762-bp DNA fragment was identified that putatively encodes the phosphoprotein phosphatase Wzb of L. rhamnosus GG.
Construction of wzb antisense RNA expression plasmid pCMPG5344.
To achieve overexpression of antisense RNA, the wzb gene was cloned in a high-copy vector in reverse orientation controlled by a constitutive promoter. Therefore, the promoter region of the ldhL gene of L. rhamnosus GG was amplified from chromosomal DNA with primers Pro-127 (5'-CTGAGCTCCTTGTCACAGGATTCACAAGTCTTGC-3') and Pro-128 (5'-GTCATATGGATATCATCCTTTCTTATGTGCATGC-3'). The 0.2-kb amplicon was cloned into a pCRII-TOPO vector (Invitrogen), resulting in plasmid pCMPG5901. Subsequently, a fragment containing wzb was cut with EcoRI from pCMPG5921 and blunt ligated in the reverse direction in pCMPG5901, which was digested with NdeI (blunt), resulting in plasmid pCMPG5922. A ca. 1-kb fragment containing the ldhL promoter and wzb gene in the antisense direction was subsequently cut from pCMPG5922 with EcoRI and ligated in the EcoRI site of the high-copy vector pLAB1301 (23), resulting in plasmid pCMPG5344. This vector was transferred to L. rhamnosus GG as previously described (9). The presence of antisense RNA was confirmed by Northern blot analysis with specific probes.
Nucleotide sequence accession number.
The sequence of the putative wzb gene has been submitted to the NCBI database (accession no. EF690379).
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FIG. 1. Comparison of capacities of biofilm formation by different lactobacilli. Capacities of biofilm formation by eight Lactobacillus strains were compared under different culture conditions: i.e., mTSB medium, MRS medium (with and without [w/o] glucose), and AOAC medium. The results are expressed compared to biofilm formation of L. rhamnosus GG in mTSB medium (positive control), which was taken as 100% (dotted line). The error bars represent standard deviations of eight biological repeats. The data shown are representative of at least three independent experiments.
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Influence of growth medium components.
Since L. rhamnosus GG does not form biofilms in the standard MRS medium, the influence of some key components was investigated. Therefore, compounds were systematically omitted from MRS medium and were used to supplement mTSB medium. When glucose, the main carbon source for lactic acid bacteria (24), was omitted from MRS medium, biofilm formation could be observed (Fig. 2A). This biofilm-repressing effect of glucose was confirmed by addition of glucose to mTSB medium, which resulted in reduction of biofilm formation (Fig. 2A). In contrast to L. rhamnosus GG, no biofilm formation in glucose-depleted MRS medium could be observed for the other L. rhamnosus and L. casei strains tested (Fig. 1).
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FIG. 2. Influence of MRS medium factors on biofilm formation by L. rhamnosus GG. (A) Different components were omitted (–) from MRS medium to investigate their effect on biofilm formation. Additionally, the influence of these components was investigated after addition (+) to mTSB medium in the same concentration as that present in MRS medium. The results are expressed compared to biofilm formation of L. rhamnosus GG in mTSB medium (positive control), which was taken as 100% (dotted line). (B) The effect of the same components on 72-h growth in suspension (OD600) was investigated after omission from MRS medium (–) and addition to mTSB medium (+).
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Influence of gastrointestinal environment-related conditions.
The influence of some factors was tested in both mTSB and AOAC medium since the growth yield of L. rhamnosus GG is quite different in these media (i.e., 0.5 and 1.5 as the final OD600 reached, respectively).
(i) pH and osmolarity.
Important stressful conditions that are encountered by intestinal bacteria include changing pH and osmolarity. To test their impact on biofilm formation, conditions were chosen that did not considerably influence growth in suspension (data not shown). Biofilm formation by L. rhamnosus GG was inhibited at an initial pH of 4.0 in all media tested, in contrast to neutral pH in the control media (Fig. 3). Increasing osmolarity and ionic strength to 0.3 M NaCl only slightly diminished biofilm formation by L. rhamnosus GG (Fig. 3).
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FIG. 3. Influence of gastrointestinal tract-mimicking conditions on biofilm formation by L. rhamnosus GG. The effect of addition of mucus (2.5 g/liter), inulin-type prebiotics (20 g/liter), bile (0.05 to 2.0%), and lactoferrin (100 µg/ml) to mTSB (black) and AOAC medium (gray) was investigated. Additionally, the influence of changing the pH and osmolarity to 0.3 M NaCl of the biofilm medium was assessed. Biofilm formations in the supplemented mTSB and AOAC media were compared to those of L. rhamnosus GG in unsupplemented mTSB and AOAC media (positive controls, taken as 100% [dotted line]), respectively.
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(iii) Mucins.
The mucus layer covering the epithelial cells is considered an important site for bacterial adhesion and colonization (40, 43). Mucus has previously been reported to have positive and negative effects on biofilm formation, depending on the bacterial species tested. Mucins stimulated biofilm formation by commensal E. coli (4), while they inhibited biofilm formation of the stomach colonizer Helicobacter pylori (8). When we added mucins to mTSB medium in a concentration of 2.5 g/liter, estimated to be present in the transverse colon (31), we observed an increase of biofilm formation by L. rhamnosus GG of more than 20% (Fig. 3). However, the effect of mucus on L. rhamnosus GG seems to be medium dependent. In AOAC medium, mucins did not stimulate biofilm formation (Fig. 3).
(iv) Nondigestible carbohydrates.
Undigested complex carbohydrates especially have a role in the lower gastrointestinal environment. Here, we investigated the influence of inulin-type prebiotics that cannot be fermented by L. rhamnosus GG (25). Addition of inulin or its derivative Synergy1 to mTSB or AOAC medium at 20 g/liter increased biofilm formation up to 1.5-fold (Fig. 3). This biofilm-enhancing effect was mainly observed for the long-chain polysaccharides (Fig. 3).
(v) Antimicrobial peptides.
The presence of different antimicrobial peptides close to the gut epithelium probably plays an important role in the absence of commensal bacteria directly adherent to the gut epithelium in healthy subjects (44). The iron-chelating peptide lactoferrin, expressed by glandular epithelial cells and neutrophils, was recently reported to block biofilm development on mucosal surfaces by the opportunistic pathogen Pseudomonas aeruginosa (concentration tested, 20 µg/ml) (42). However, no effect of lactoferrin on biofilm development of the probiotic bacterium L. rhamnosus GG could be observed at concentrations of 20 and 100 µg/ml (Fig. 3).
Role of EPS.
EPS play a crucial role in biofilm development (6). We chose to analyze the effect of knocking down the wzb homologue, since Wzb is a phosphotyrosine protein phosphatase that has been shown to regulate EPS biosynthesis and polymer size in combination with a protein tyrosine kinase in different bacteria such as E. coli (50) and Streptococcus pneumoniae (32). In Burkholderia cepacia, biofilm formation is reduced when the wzb homologue bceD is inactivated (14). We first isolated and identified the L. rhamnosus wzb homologue and investigated its role in L. rhamnosus GG biofilm formation by antisense RNA technology as previously described (5). Overexpression of antisense RNA of wzb by pCMPG5344 showed medium-dependent effects on biofilm formation. Silencing of wzb expression resulted in the largest reduction in biofilm formation in AOAC medium, while in other media only minor effects were observed (Fig. 4A). To investigate a possible link between biofilm formation and EPS production, EPS fractions of L. rhamnosus GG grown in different media were isolated (Fig. 5). EPS production was shown to be medium dependent. AOAC medium induced the highest EPS production by L. rhamnosus GG (Fig. 5). This suggests, together with the results for pCMPG5344 (wzb antisense), that biofilm formation seems to be especially EPS dependent in AOAC medium.
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FIG. 4. Influence of genetic factors on biofilm formation by L. rhamnosus GG. (A) The influence of EPS was investigated after overexpression of antisense wzb RNA in strain CMPG5344 of L. rhamnosus GG in different growth media: mTSB, AOAC, and MRS medium without glucose (MRS – glc). Biofilm formation was then compared to that of L. rhamnosus GG transformed with the empty cloning vector pLAB1301 (positive control). Erythromycin was added for stable maintenance of the plasmids. (B) The influence of D-alanylation of LTA on biofilm formation was investigated by analysis of the phenotype of a dltD mutant, CMPG5540, under the same conditions. Biofilm formation was then compared to that of wild-type L. rhamnosus GG grown under the same conditions (positive control). (C) The influence of central metabolism was investigated by analysis of the phenotype of the luxS mutant CMPG5412 under different conditions. Biofilm formation of the mutants was compared to that of wild-type L. rhamnosus GG (positive control) under the same conditions, which was taken as 100% (dotted line).
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FIG. 5. Comparison of levels of EPS production by L. rhamnosus GG in different media. Two EPS fractions were differentiated: EPS-b and EPS-r. EPS fractions were isolated from stationary-phase cultures of L. rhamnosus GG grown in MRS medium (OD600, 2.0), AOAC medium (OD600, 1.5), and mTSB medium (OD600, 0.5). Since the final OD differs considerably in the different media, results are expressed as µg of glucose equivalents produced per 109 CFU.
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Role of LuxS and central metabolism.
The activity of LuxS is widely investigated in pathogenic bacteria in relation to biofilm formation due to its role in the biosynthesis of the interspecies signaling molecule AI-2 (49). In the recycling of S-adenosylmethionine (SAM), the LuxS enzyme catalyzes the conversion of S-ribosylhomocysteine, yielding AI-2 and homocysteine. However, since the LuxS enzyme forms an integral part of the activated methyl cycle and amino acid metabolism of methionine and cysteine, the analysis of phenotypes of luxS mutants is multifaceted (52). Previously, we have shown that the L. rhamnosus GG luxS mutant CMPG5412 is affected in biofilm formation in AOAC medium. However, this defect could not be complemented by adding the signaling molecule AI-2, whereas it could be nutritionally complemented with cysteine (27). In this study, we compared the biofilm formation capacities of CMPG5412 in the different media used in this study (Fig. 4C). The biofilm defect of the luxS mutant was medium dependent. In a nitrogen-rich environment such as mTSB medium, CMPG5412 was not impaired in biofilm formation, in contrast to the situation in AOAC medium (Fig. 4C). This is in agreement with our previously published results where we showed that the biofilm defect of CMPG5412 has an important metabolic nature and is not merely due to disrupted AI-2-mediated communication (27).
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We can conclude from our comparative analysis that the intrinsic biofilm formation capacity of L. rhamnosus GG is strongly dependent on environmental factors and the culture medium used. In general, there appeared to be an inverse relationship between extent of biofilm formation and growth in suspension (Fig. 2). Nutrient limitation and especially low availability of fermentable carbon sources, such as in mTSB medium with its low C/N ratio, stimulated biofilm growth of L. rhamnosus GG. However, growth limitation does not seem to be sufficient to induce biofilm formation in Lactobacillus strains, as shown by a comparative study with other Lactobacillus strains (Fig. 1).
The underlying genetic factors determining the good biofilm formation capacity of L. rhamnosus GG still need to be characterized, since it is probably mediated by various genetic pathways. In this study, we investigated the role of EPS (wzb), LTA (dltD), and central metabolism (luxS). In most bacteria, EPS production is important for biofilm formation (6). L. rhamnosus GG is not known as a high EPS producer in MRS medium in comparison with other lactobacilli (36), although we have demonstrated in this study that EPS production of L. rhamnosus GG is highly medium dependent (Fig. 5). The importance of EPS in biofilm formation by L. rhamnosus GG seems to be dependent on the culture conditions. Indeed, AOAC medium induced the highest EPS production (Fig. 5), while the best biofilm formation was observed in mTSB medium (Fig. 1). Also, a wzb-knockdown mutant of L. rhamnosus GG was shown to be particularly impaired in biofilm formation in AOAC medium. Therefore, EPS production is clearly not the only factor determining biofilm formation of L. rhamnosus GG. For instance, besides EPS production quantity, the polymer size and specific chemical structure and composition of the EPS molecules could also affect biofilm formation. Moreover, in addition to EPS, other surface components are most likely involved in biofilm formation, as exemplified by the dltD mutant. Although dltD inactivation resulted in increased negative surface charge (35), we observed more biofilm formation on polystyrene, depending on the culture medium. This is probably due to indirect effects of altered LTA on biofilm development. For instance, absence of D-alanyl esters in teichoic acids has been shown to alter folding of exoproteins in Bacillus subtilis (21) and to cause loss of large surface protein adhesins in Streptococcus gordonii (7). Altered surface proteins might lead to altered physicochemical properties of the cell surface. Additionally, differences in central metabolism could also partly account for the variation in biofilm formation capacity between lactobacillus strains, as exemplified by contrasting biofilm phenotypes in Lactobacillus reuteri (46) and L. rhamnosus GG (27) luxS mutants.
Biofilms of lactobacilli can be found in many natural environments. Since the gastrointestinal tract is an important target for probiotics, some factors related to this niche were investigated in this study. Our data show that conditions such as low pH, high osmolarity, and the presence of bile and mucins highly modulate biofilm formation of L. rhamnosus GG, but the effect of each factor depends on the microenvironment (i.e., the culture medium). Some factors such as mucins probably facilitate binding of L. rhamnosus GG to substrates. L. rhamnosus GG was even previously shown to induce mucin expression (29), which could be a way for surface conditioning of the microhabitat to increase its colonization capacity. Additionally, L. rhamnosus GG has excellent in vitro mucus-adhering properties (47), which are mediated in many lactobacilli by specific mucus-binding proteins (3). The fact that the biofilm-promoting effect of mucus is less pronounced in the EPS-promoting AOAC medium might be due to shielding of these mucus-binding proteins by EPS. Additionally, undigested food particles may affect the structural arrangement of the microbiota in the intestine (43). It seems plausible that the observed increased biofilm formation of L. rhamnosus GG by inulin is due to stimulation of aggregation. These complex polysaccharides might be incorporated in the extracellular matrix, thereby enhancing biofilm formation. Other factors such as pH and bile acids may greatly affect the cell surface of L. rhamnosus GG itself and thereby influence biofilm development. Bile stimulated biofilm formation of L. rhamnosus GG in concentrations not affecting growth. As shown for Vibrio cholerae (20), bile might therefore be a signal for L. rhamnosus GG to form biofilms in the small intestine. It will be of interest to investigate in future studies differential gene expression of L. rhamnosus GG in the presence of bile. In some bacteria, bile induced the expression of specific adhesins such as EPS (20) and fimbria-like appendages (37). Additionally, biofilm formation of L. rhamnosus GG was shown to be more sensitive to low pH than growth in suspension, as was also reported for Streptococcus gordonii (28). However, biofilm formation is a complex process. The crystal violet method used in this study assesses the final outcome of initial bacterial attachment and biofilm maturation. It might well be that low pH stimulates initial adhesion, as was shown for adhesion to epithelial cells (17), but that the development to mature biofilms is inhibited by low pH. Interestingly, some lactobacilli are able to colonize in biofilm-like communities the acidic stomach of rodents (46). This clearly demonstrates that further studies, including in vivo imaging such as fluorescence in situ hybridization, are needed to investigate the biofilm formation capacities of exogenously applied and endogenous lactobacilli in different compartments (e.g., stomach, small intestine, and colon) and niches (e.g., mucous layer, mucosa, and food residues) and even at other sites outside the gastrointestinal tract.
We thank E. Steenackers and S. Tejero for valuable technical assistance. We gratefully acknowledge D. Bosscher from ORAFTI (Belgium) for kindly providing the inulin-type prebiotics used in this study.
Published ahead of print on 7 September 2007. ![]()
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