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Applied and Environmental Microbiology, December 2007, p. 7582-7588, Vol. 73, No. 23
0099-2240/07/$08.00+0 doi:10.1128/AEM.01326-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Ayana Yoshimura,1
Kentaro Arikawa,1
Ayumi Hidaka,1
Jun Ogasawara,2
Atsushi Hase,2
Haruhiko Masaki,3 and
Yoshikazu Nishikawa1*
Graduate School of Human Life Science, Osaka City University, Osaka 558-8585,1 Department of Microbiology, Osaka City Institute of Public Health and Environmental Sciences, Osaka 543-0026,2 Department of Biotechnology, University of Tokyo, Tokyo 113-8657, Japan3
Received 13 June 2007/ Accepted 1 October 2007
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E. coli O157:H7 (O157), a serotype of EHEC, is infectious to humans at very low doses and is currently one of the most devastating food-borne pathogens in many parts of the world. EHEC is characterized by its ability to produce Shiga toxin (Stx), which is a major virulence factor in infectious disease (7). The Stx family is composed of two main groups, Shiga toxin 1 (Stx1) and Shiga toxin 2 (Stx2), with Stx2 apparently more virulent in humans than Stx1 (19). Both toxins are normally encoded in the genomes of lysogenic lambdoid phages. Stx causes apoptosis in intestinal epithelial cells and mediates local damage in the colon, thus resulting in hemorrhagic colitis. Furthermore, the toxin produced in the colon travels to the kidney and possibly to the brain via the bloodstream (3), which results in renal damage, leading to hemolytic-uremic syndrome (HUS) and fatal neurological abnormalities. However, different individuals respond to exposure to EHEC in different ways, and it is not clear why some people are asymptomatic whereas others develop mild gastrointestinal illness to hemorrhagic colitis and still others develop full-blown HUS.
Normal gastrointestinal flora has marked effects on the morphological, physiological, and immunological development of the host (1). Resident microbiota play an important role in the prevention and/or amelioration of intestinal infections through a variety of mechanisms, such as (i) direct inhibition of pathogens by bacteriocins and/or metabolites, (ii) competition for receptors and nutrients, and (iii) stimulation of innate or acquired host immunity (12). Some strains have been used as probiotic agents based on the principle of competitive exclusion or displacement of diarrheagenic bacteria with nonpathogenic strains (20).
Bacteriocins are bacterial proteins that are lethal to other members of the same or closely related species. The bacteriocins produced by and active against E. coli and related bacteria are called colicins. Indigenous bacteria producing colicins are assumed to have a competitive advantage over nonproducing strains since the toxin acts directly against susceptible bacteria. Some colicinogenic E. coli strains have been reported to be effective in inhibiting diarrheagenic E. coli, including O157, in vitro (5, 15, 24, 25). Zhao et al. (33) has suggested that competitive exclusion of O157 may occur in cattle with administration of colicinogenic E. coli strains. Furthermore, we found that colicinogenic bacteria able to suppress the growth of O157 are more prevalent among healthy O157 carriers than among age-matched subjects who do not carry O157 (28). It thus appears that inhibitory bacteria may play a role in inhibiting propagation of O157 and/or suppressing expression of virulence factors by this pathogen in the human gut.
Although colicinogenic bacteria are apparently useful candidates for the prevention of infectious disease caused by O157, it is known that some antibiotics, such as fluoroquinolones, accelerate Stx production in O157 (13, 27, 32). The production of Shiga toxins is one of the most critical factors in the development of HUS. It is probable that the more toxin produced, the more likely it is that a patient will develop significant medical problems. Since colicins are a type of antimicrobial agent, the purpose of this investigation was to examine whether colicinogenic bacteria or colicins influence the production of Stx. The RecA protease, a component of the so-called SOS system, causes phage induction and increased toxin production via concomitant multiplication of toxin gene copies. To elucidate the mechanism by which colicin elicits such effects, expression of SOS reaction-associated genes was also examined by semiquantitative real-time reverse transcriptase PCR (RT-PCR).
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Bacteria were routinely grown at 37°C in Luria broth (L broth) (Difco Laboratories, Detroit, MI) or tryptone soya agar (Oxoid, Basingstoke, Hampshire, United Kingdom). Sorbitol-tryptone soya agar, which is tryptone soya agar supplemented with sorbitol (10 g/liter) and neutral red (0.03 g/liter; Sigma-Aldrich, St. Louis, MO), was used for differential counting of sorbitol-fermenting colicinogenic bacteria and nonfermenting O157 colonies; MacConkey sorbitol agar was not used, since it gave lower counts than sorbitol-tryptone soya agar.
Coculture.
O157 strains or colicinogenic strains grown in L broth at 37°C were washed with phosphate-buffered saline (PBS) and resuspended in fresh L broth. Bacterial suspensions were prepared at a concentration of ca. 5 x 108 CFU/ml. Stx production was induced by coculture of O157 with colicinogenic strains in 10 ml of L broth. As a positive control, mitomycin C was added to another O157-inoculated culture at 250 ng/ml. The negative control was cultured without colicinogenic strains or mitomycin C. O157 was inoculated for culture at a concentration of 3 x 106 CFU/ml and was subsequently incubated at 37°C without shaking. At 24 h and 48 h, samples were taken from each tube and CFU and Stx concentrations were determined. For Stx assay, part of each sample was immediately frozen at –80°C. Viable counts (CFU/ml) were determined by the spiral plating method (Eddy Jet; IUL, Barcelona, Spain).
Colicin preparation.
The method of Pugsley and Oudega (22), with some modifications, was used to prepare colicin solution. Colicinogenic strains were cultured in L broth overnight, and 5 ml of the culture was inoculated into 50 ml of fresh L broth. Organisms were then cultured at 37°C for 3 to 4 h with shaking (160 rpm). When the optical density at 600 nm reached at 0.4, mitomycin C solution (250 µg/ml) was added to the cultures at a final concentration of 500 ng/ml. After 1 h of additional incubation, culture broth was centrifuged for 10 min at 10,000 x g. Pelleted bacteria were resuspended in 5 ml of PBS and were disrupted by sonication (UH-50; SMT Co. Ltd., Tokyo, Japan). After centrifugation at 10,000 x g for 10 min, the supernatant was filtrated through low-protein-binding 0.45-µm-pore-size membrane filters (Millex-HV; Millipore, Ireland) and was stored at –80°C as colicin solution. A standard strain that was not transformed with colicin plasmids was used to prepare negative controls in some experiments. One arbitrary unit (AU) was defined as the reciprocal of the highest dilution that gave rise to a discernible zone of inhibition, as described below.
Antibacterial assay.
The antibacterial activity of colicin solution was assayed by dropping 5 µl of colicin solution onto 5 ml of soft agar (1%) preseeded with 106 O157 cells on a regular-strength Luria agar plate, with 20 strains being spotted on each plate. Plates were then incubated overnight at 37°C, and drops showing zones of inhibition were considered to be putative colicin solution able to suppress O157 growth.
Effects of colicins on Stx production and induction of prophages.
O157 strains grown in L broth at 37°C were washed with PBS and resuspended in fresh L broth. An aliquot of 100 µl of bacterial suspension was inoculated into 10 ml of fresh L broth to give an initial concentration of O157 of 1 x 106 CFU/ml, and then 100 µl of colicin solution or mitomycin C (final concentration, 250 ng/ml; positive control) was added. These samples were incubated statically at 37°C. Numbers of CFU, Stx concentrations, and numbers of PFU were determined at 6 h. A portion of each sample was immediately frozen at –80°C for subsequent Stx assays.
Viable counts, Stx assay, and phage plaque assay.
Differential amounts of Stx1 and Stx2 were determined by a reverse passive latex agglutination test using VTEC-RPLA (Denka Seiken Co., Tokyo, Japan), as reported previously (19). To induce bacterial lysis, polymyxin B solution (5 mg/ml) was added at 100 µg/ml and was incubated at 37°C for 30 min. After centrifugation, twofold serial dilutions of the supernatant were prepared using 96-well microdilution plates, and these were mixed with solutions of latex particles coated with anti-Stx1 or anti-Stx2 monoclonal antibody. The reciprocal of the highest dilution causing latex agglutination was recorded as the titer. Stx levels were recorded as the toxin titer since the detection limit of the kit was about 1 ng/ml.
The number of phages released after prophage induction was determined by plaque assay. O157 culture broths were centrifuged, and the supernatants were filter sterilized through a 0.45-µm filter. The resulting filtrates containing free phage particles were serially diluted 10-fold and were then mixed with a suspension of indicator strain in L soft agar (0.5%) supplemented with 10 mM CaCl2 and poured onto L agar plates; the E. coli K12 colicinogenic standard strain RR1-E9 was used as an indicator since it would likely possess resistance to contaminating colicins introduced with the samples. After overnight incubation at 37°C, the number of plaques formed in the top layer (PFU) was determined. The plaques (at least 20 plaques on each plate) were examined for Stx genes by using a PCR assay (4).
RNA extraction.
Optical densities of bacterial cultures were measured at 600 nm, and their concentrations were adjusted. Culture broth (0.5 ml) containing 5 x 108 cells was mixed with 1 ml of RNAprotect bacterial reagent (QIAGEN, Hilden, Germany) to stabilize the mRNA, and the mixture was stored at –80°C. Total RNA was subsequently extracted using the RNeasy minikit (QIAGEN), and contaminating DNA was digested using DNase I (Promega, Madison, WI) according to the manufacturer's protocol. The RNA sample was quantitated based on absorption at 260 nm, and purity was determined by the ratio of absorption values at 260 and 280 nm (GeneQuant pro"S"RNA/DNA Calculator; Amersham Pharmacia Biotech, Uppsala, Sweden). Extracted RNA specimens were subjected to reverse transcription using the pd(N)6 random hexamer (Amersham Pharmacia Biotech) and the Omniscript reverse transcriptase kit (QIAGEN) according to the manufacturer's protocol, and cDNA was used as a template for RT-PCR.
RT-PCR.
PCR mixtures consisted of 0.1 µl of Ex Taq (Takara-Bio; Ohtsu, Shiga, Japan), 2 µl of 2.5 mM deoxynucleoside triphosphate mixture, 2 µl of 25 mM MgCl2, 2.5 µl of 10x Ex Taq buffer, 0.1 µl of each primer at 50 µM, 1 µl of cDNA, and 17.2 µl of sterilized molecular-grade water. DNA extracted from an O157 strain (no. 3001) by boiling was used as a positive control. RNA samples that were not reverse transcribed were used as negative controls in order to ensure that amplification was due to cDNA templates and not contaminating genomic DNA. PCR was performed under the following conditions: denaturation at 95°C for 10 min and 30 cycles of 95°C for 30 s, 55°C for 30 s, and 72°C for 30 s, followed by a 5-min extension at 72°C and holding at 4°C. Primer sets are listed in Table 1. PCR products were separated on 2.5% agarose gels, followed by staining with ethidium bromide, and were visualized on a UV transilluminator.
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TABLE 1. PCR conditions and primers used in this study
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Statistics.
Post hoc multiple comparisons between groups were made by using Tukey's test with the statistics add-in software Statcel 2 (OMS, Tokorozawa, Japan) for Microsoft Excel unless otherwise stated.
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FIG. 1. Effects of coculture with colicinogenic bacteria on Stx production. Escherichia coli O157 strain 96-98-83 was cultured in the presence of colicinogenic bacteria. (A) After 24 h or 48 h of incubation, the viable count was determined. Coculture (full line) with E. coli O157 and the colicin E3 strain, with E. coli O157 and colicin E5, or with E. coli O157 and colicin E9 is shown. Single culture of E. coli O157 acted as a control. (B) Stx production was measured by using a reverse passive latex agglutination test. The reciprocal of the highest twofold serial dilution causing latex agglutination was recorded as the titer and is expressed as a binary logarithmic value. Data (means ± standard errors) were from three independent experiments.
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FIG. 2. Effects of extracted colicins on Stx production from several Escherichia coli O157 strains. E. coli O157 strains were incubated with 800 AU of each colicin. A standard strain that was not transformed with colicin plasmids was used to prepare negative controls. After 24 h of incubation at 37°C, concentrations of Stx were measured by using a reverse passive latex agglutination test. Data are expressed as multiples of Stx concentrations in the control. Ten strains were assayed three times, and data presented are from five strains possessing different combinations of Stx genes. Data (means ± standard errors) were from three independent experiments. Significant differences were observed at P values of <0.01 (between a and b or c and d in each group) or P values of <0.05 (between e and f or g and h in each group).
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FIG. 3. Dose-dependent induction of Stx production by colicin E9. Escherichia coli O157 strain 96-98-83 was cultured in the presence of colicin E9, and viable counts (A) and concentrations of Stx (B) were examined. The reciprocal of the highest twofold serial dilution causing latex agglutination was recorded as the titer and is expressed as a binary logarithmic value. Signals: viable count of E. coli O157 after addition of colicin E9 at 100 AU, 200 AU, 400 AU, 800 AU, or 1,600 AU. The control was cultured without colicin. Representative plots of two dose-response experiments are shown.
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FIG. 4. Effects of colicins on Stx production and induction of prophages. Escherichia coli O157 strain 3001 was cultured in the presence of colicin E9 for 6 h, and Stx production (A) and numbers of phages induced in supernatants (B) were examined. The reciprocal of the highest twofold serial dilution causing latex agglutination was recorded as the titer and is expressed as a binary logarithmic value. The number of phages was determined by plaque assay. Columns show PBS (control), addition of colicin E9 at 800 AU (E9), and mitomycin C (MC) (positive control, 25 ng/ml). Data (means ± standard errors) were from three independent experiments.
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FIG. 5. Effects of colicins on expression of SOS response-associated genes. Escherichia coli O157 strain 3001 was cultured in the presence of 800 AU of colicin E9 (lane 2) or 50, 25, or 12.5 ng/ml mitomycin C (lanes 3, 4, and 5, respectively). Lane 1 is the control. After 6 h of incubation at 37°C, RNA was extracted and used as a template (lanes 1 to 5) for RT-PCR. DNAs of E. coli O157 strain 3001 (lane 6) and D. W. (lane 7) were used as positive and negative control templates.
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FIG. 6. Effects of colicins on transcription of SOS reaction-associated genes. Escherichia coli O157 strain 3001 was cultured in the presence of 800 AU of colicin E9, mitomycin C, or PBS (control). After 6 h of incubation at 37°C, RNA was extracted. Real-time RT-PCR assays were performed using SYBR green on a PRISM 7000 sequence detection system. Data are expressed as multiples relative to the control value. Columns show addition of colicin E9 at 800 AU or mitomycin C. Data (means ± standard errors) are from three independent experiments. Significant differences between data from colicin- and mitomycin-treated groups were evaluated for each gene using Student's unpaired t test or Welch's t test after an F test was performed.
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DNase colicins induced prophages and increased Stx2 production. Quinolones, which are inhibitors of bacterial DNA gyrase, accelerate Stx production in O157 (8-10, 13, 32). Mitomycin C, which damages DNA by cross-linking complementary strands, and irradiation also reportedly increased Stx production (31). Walker et al. reported that the DNase colicin E9 induced 28 genes of the LexA-regulated SOS response in E. coli K12 strain MG1655 (30). In combination with these reports, our findings strongly suggest that the DNA damage caused by the DNase colicins activates the SOS system, resulting in cleavage of the CI phage repressor and enhanced Stx production. In fact, RT-PCR and semiquantitative real-time RT-PCR revealed obvious increases in the expression of SOS-associated genes (23) and the Stx2 gene (Fig. 6), although the stimulatory effects of DNase colicins (800 AU) are modest, being equivalent to 25 ng/ml mitomycin C.
Compared to Stx2 production, production of Stx1 did not show any clear induction by DNase colicins. CI phage repressors work to regulate the switch between lysis and lysogeny by binding to operator regions. Lambdoid prophage induction requires inactivation of repressor DNA binding activity, and this inactivation can be caused by the DNA damage-induced active form of RecA. Koudelka et al. reported that the Stx2 phage (933W) was comparatively unstable, since operator region 2 has relatively low affinity for the repressor (11). Patients infected with EHEC strains producing Stx2 alone or in combination with Stx1 are more likely to develop serious renal or circulatory complications than patients infected with strains producing Stx1 alone (21, 26). Previously we found that Stx2 is more likely to be associated with hemorrhagic diarrhea than Stx2 variants (19). Since the unstable nature of the Stx2 phage due to the low affinity for phage repressor results in easy phage induction and Stx2 production, Stx2-producing O157 strains are more virulent than EHEC strains possessing only Stx1.
Recently bacteriocins and producer strains have attracted attention, since bacterial proteins can be utilized as additives for biopreservation; nisin, a bacteriocin found in lactic acid bacteria, is now commercially available as a food additive. Indeed, an E2-type DNase colicin was reported to be effective in protecting alfalfa seeds from O157 (16). Colicins are thought to be digested before arriving at the intestine, and even if they enhance Stx production in food-borne O157 organisms, Stx is unlikely to be the cause of intradietetic intoxication. However, if DNase colicins are used as food additives for biopreservation, we should carefully assess the risks, since the concentrations may be beyond physiological levels.
Interaction between resident bacteria and enteric pathogens presumably plays a critical role in pathogenesis and individual sensitivity to pathogens. Gamage et al. reported that Stx levels in mouse intestines infected with O157 increased in the presence of commensal bacteria that were susceptible to the Stx phage while phage-resistant bacteria inhibited Stx production (2). Although DNase colicin-producing bacteria slightly enhanced Stx production in cocultured O157 in this study, we expect beneficial effects to be exerted by colicinogenic bacteria as part of the microbiota unless large amounts of purified colicins are used. Stimulation of Stx production occurred only when the concentration ratio of producer to O157 was 1:1. If small numbers of ingested O157 bacteria settle in intestinal epithelia in the presence of large amounts of resident colicinogenic bacteria, such inhibitory bacteria would be beneficial irrespective of their colicin type. Furthermore, the decreased Stx production due to RNase colicins in two strains suggests that colicinogenic bacteria may contribute differently to host protection based on target O157 strains.
In conclusion, the present study indicates that DNase colicins and colicinogenic bacteria can be stimulatory factors for Stx production in O157. Further studies should be performed in order to determine the risks and benefits of using colicinogenic bacteria and colicins for bacterial interference, although a variety of studies have suggested their benefits. Adhesion of O157 organisms to intestinal epithelial cells is a prerequisite step in establishing infection (6). Intimate adherence allows O157 to efficiently transfer Stx to epithelial cells. Colicins may inhibit the expression of colonization factors, such as the type three secretion system and effectors, and even DNase-colicin-producing bacteria could thus act beneficially, nullifying the disadvantageous effects of increased Stx production. Further investigations are in progress to elucidate the effects of colicins on Stx production in vivo and on expression of the type three secretion system.
Published ahead of print on 12 October 2007. ![]()
Present address: Department of Molecular Bacteriology, Research Institute for Microbial Diseases, Osaka University, 3-1 Yamadaoka, Suita, Osaka 565-0871, Japan. ![]()
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