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Applied and Environmental Microbiology, December 2007, p. 7622-7628, Vol. 73, No. 23
0099-2240/07/$08.00+0 doi:10.1128/AEM.01000-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Department of Microbiology,1 Genome Sciences, University of Washington, Seattle, Washington2
Received 3 May 2007/ Accepted 30 September 2007
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In a laboratory setting, injection of as few as 10 P. luminescens organisms will result in rapid death of the insect (8). Additionally, bacterial culture supernatants, introduced either by an oral route or injected into the hemocoel, are toxic (1). Many potential bacterial products are implicated in this killing, including a toxin termed "makes caterpillars floppy," hemolysins, RTX (repeats in toxin) family members, and large toxin complexes (Tc) (1-3, 5, 7). Photorhabdus also secretes numerous proteases and lipases and is able to inhibit competitor bacteria by synthesizing various antibiotics and bacteriocins (7-9, 13).
As with all pathogens, Photorhabdus must avoid the infected host's immune response. Similar to the innate immune response of higher organisms, the insect innate immune response has both a cellular and a humoral component (11). The cellular response includes phagocytic cells called hemocytes, which either take up the invading bacteria or form cellular aggregates called nodules that trap them. The humoral response includes the production of numerous antimicrobial peptides and proteins. In contrast to vertebrates, the humoral arm of the insect innate immune system also has an antimicrobial function termed melanization. Melanization is the deposition of melanin onto invading organisms, which can confine the infection and kill the pathogen. The melanization response is controlled by a cascade of serine proteases that results in the activation of the enzyme prophenoloxidase (PPO). PPO is present in the hemolymph at all times and when activated catalyzes the synthesis of melanin. Insects produce serine protease inhibitor proteins, called serpins, which regulate the melanization cascade through the specific inhibition of the terminal protease. Regulation of this pathway is to prevent excessive melanization (6).
In this report we demonstrate that a Photorhabdus protein induces the melanization reaction in the insects Manduca sexta, Drosophila melanogaster, and Galleria mellonella. This protein was isolated and identified as the product of the P. luminescens gene plu1382. Plu1382 is a predicted M4 metalloprotease family member that has previously been named PrtS (4).
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Bacterial strains and growth conditions.
P. luminescens Hb, Photorhabdus asymbiotica, and Photorhabdus temperata C1 were purchased from the American Type Culture Collection (ATCC 29999, ATCC 43950, and ATCC 29304, respectively). P. luminescens Hm and TT01 were generous gifts from E. Peter Greenberg (University of Washington) and Alain Givaudan (University of Montpellier), respectively. All Photorhabdus strains were maintained on Luria-Bertani (LB) agar plates. For protein purification, bacteria were grown with aeration at 30°C for 72 h in LB broth. At 72 h of growth, cultures of TT01 contain 5 x 108 viable cells per ml, while cultures of all other Photorhabdus strains contain 5 x 109 viable cells per ml.
For expression and purification of recombinant proteins, Escherichia coli TOP10 and BL21* cells were used with the expression plasmid pET101 as suggested by the manufacturer (Invitrogen, Carlsbad, CA). E. coli was routinely grown at 37°C on LB agar or in LB broth supplemented with 100 µg ml–1 of carbenicillin when appropriate (Research Products International, Mount Prospect, IL).
Purification of native PrtS.
P. luminescens TT01 was inoculated from a single colony into 3 ml LB and grown overnight at 30°C with aeration. The culture was diluted 1:250 into LB and grown for 72 h at 30°C with aeration. The resulting dark-brown-pigmented culture was centrifuged, and the supernatant was filtered through a 0.22-µm filter (Corning, Acton, MA) to remove cells and stored at 4°C until purification. The supernatant was diluted 1:5 into 25 mM Tris (pH 8.0) to adjust the pH, and a 100-ml volume of diluted sample was run over a HiTrap DEAE column (GE Healthcare, Piscataway, NJ) using an Akta Purifier fast protein liquid chromatograph (GE Healthcare). Fractions were eluted in steps of increasing NaCl concentration. Eluates were examined by A280 and sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE). PrtS eluted with 25 mM Tris, 0.1 M NaCl, pH 8.0. PrtS-containing fractions were concentrated using a Vivaspin 10-kDa concentrator (ISC BioExpress, Kaysville, UT) and further purified on either a Superdex 75 or a Superdex 200 sizing column. A sample (100 µl) of concentrated DEAE-purified protein was loaded onto an Akta Purifier fast protein liquid chromatography sizing column and run with 25 mM Tris, 0.1 M NaCl, pH 8.0. Fractions containing PrtS were further concentrated using a 10-kDa Vivaspin concentrator. The bicinchoninic acid assay (Pierce, Rockford, IL) was used to determine total protein concentration when possible (at times pigments in supernatants interfered with colorimetric assays).
Purified PrtS was identified by matrix-assisted laser desorption ionization-time of flight (MALDI-TOF) analysis performed at the University of Washington Mass Spectrometry Facility.
Construction of recombinant PrtS (rPrtS) and rPrtS-E168A expression plasmids.
DNA encoding PrtS (plu1382) was amplified by PCR from strain TT01 genomic DNA utilizing PfuUltra DNA polymerase (Stratagene, La Jolla, CA), the forward primer CACCATGCAAATACAAAACAATAACTAC, and the reverse primer CTCTTCAGTTTTATCTTTATTTTTG (Operon, Huntsville, AL). The PCR product was inserted into pET101 according to the manufacturer's suggestions, to form pKH7. The DNA sequence of the plasmid insert was confirmed by automated DNA sequencing. Expression from this plasmid results in full-length PrtS with a carboxy-terminal histidine tag to facilitate purification.
A construct encoding PrtS with a mutation in the predicted catalytic glutamate at position 168 (E168) was also generated. The codon for E168 was mutated to code for alanine using the QuikChange site-directed mutagenesis kit (Stratagene). The primer CGATGTGATCGGCCATGCATTATCACATGGTG (underlined is the site of the A-to-C base change) and its reverse complement were used with pKH7 as the DNA template. The DNA sequences of the resulting mutated plasmids were determined, and a plasmid containing the correct change was isolated and designated pKH8.
Recombinant protein expression and purification.
rPrtS and rPrtS-E168A were expressed and purified using the pET101 constructs pKH7 and pKH8, according to the manufacturer's suggestions with some exceptions. Briefly, 100 ml of E. coli BL21* freshly transformed with pKH7 or pKH8 was grown in LB-carbenicillin (100 µg ml–1) at 37°C with aeration. When the cell culture reached an optical density at 600 nm of 0.8, isopropyl-ß-D-1-thiogalactopyranoside (IPTG) was added to a final concentration of 0.8 mM. Induction was allowed to proceed at 30°C with aeration for 2 h. Bacterial cells were collected by centrifugation, and the pellets were lysed using a French pressure cell. The lysate was clarified by centrifugation, followed by filtration through a 0.45-µm filter. The E. coli lysate containing rPrtS-E168A was loaded onto a His-bind (Novagen, La Jolla, CA) column, and fractions were eluted with steps of 0.1, 0.5, and 1 M imidazole. The eluted proteins were equilibrated with 0.1 M Tris (pH 8.0) using Spectra 10,000-molecular-weight-cutoff dialysis tubing and stored at 4°C. rPrtS was purified by the same method as described for rPrtS-E168A above except that, from the time of induction with IPTG, all solutions contained 1x Complete protease inhibitor (Roche, Indianapolis, IN), and the protein was eluted with 0.1 M imidazole.
SDS-PAGE and Western immunoanalysis.
Protein samples were mixed with equal volumes of 2x sample buffer containing 10% ß-mercaptoethanol; heated at 60°C for 1 h (16); and loaded onto a 12%, 15%, or 4 to 20% gradient polyacrylamide gel for SDS-PAGE. Protein standards were purchased from Bio-Rad (Hercules, CA). Western analyses were performed on a Millipore Immobilon P membrane (Bedford, MA). Histidine tag-labeled proteins were detected using anti-His6-horseradish peroxidase antibody from Abcam (Cambridge, MA) diluted 1:5,000. Autoradiography was performed with enhanced chemiluminescence detection (GE Healthcare) and blue autoradiography film (ISC Bioexpress).
Activity assays.
The proteolytic activities of PrtS, rPrtS, and PrtS-E168A were examined by caseinolytic macroassay with a few modifications (4). Azocasein and proteins were in 0.1 M Tris (pH 8), and the assays were performed at 50°C. The metalloprotease inhibitor 1,10-phenanthroline was included in these assays at 8 mM.
The autocatalytic activity of rPrtS was examined by a size shift from approximately 42 kDa to approximately 37 kDa. rPrtS (0.6 µg or 1.2 µg) and rPrtS-E168A (100 µg) were incubated together at room temperature in the presence and absence of 8 mM 1,10-phenanthroline for 0, 2, and 18 h. Portions of the protein mixtures were prepared for SDS-PAGE as described above.
Insect toxicity assays.
Manduca sexta fifth-instar larvae were the generous gift of Lynn Riddiford, Department of Biology, University of Washington. Larvae were rested on ice for 5 min, injected with 20-µl volumes using BD Ultra-Fine II insulin syringes, and kept at room temperature for the remainder of the experiment. Larvae were observed for 120 h when concentrated supernatant was injected, 96 h when purified PrtS was injected, and 72 h when recombinant protein was used. Injections contained 2.2 µg or 4.4 µg PrtS purified from supernatants of TT01 or greater than 5 µg rPrtS-E168A. Supernatants from strains grown at 30°C for 72 h were concentrated 2.5-fold in an Amicon 10,000-molecular-weight-cutoff concentrator (Millipore) and injected as 20-µl volumes. At least three larvae were injected for each protein, and each experiment was performed at least twice. Larvae were scored as dead when they did not respond to repeated painful stimulation.
Galleria mellonella insects were purchased from Petco, chilled on ice for 2 min, and injected with 20 µl containing approximately 5.6 µg of supernatant purified PrtS, again done in triplicate.
Adult Drosophila melanogaster wild type (Oregon R) and D. melanogaster Black cells (Bc[1] fj[1] wt[1]; Bloomington stock number 1036), which contain a mutation in the humoral melanization pathway, were used. Proteins were introduced into the flies by pricking the thorax with a 25-gauge needle that had been dipped into solutions of either buffer alone (33% glycerol, 0.07 M Tris, pH 8.00), rPrtS (2.6 µg µl–1 in 33% glycerol, 0.07 M Tris, pH 8.00), or rPrtS-E168A (2.6 µg µl–1 in 33% glycerol, 0.07 M Tris, pH 8.00). Insects were scored for mortality at 4, 24, and 48 h postinjection. Student's t test analyses of results were performed using the program at http://www.physics.csbsju.edu/stats/t-test.html.
N-terminal sequence of PrtS.
To determine the N-terminal sequence of purified rPrtS, the protein was run on a 4 to 20% gradient polyacrylamide gel (Ready Gel; Bio-Rad), transferred to polyvinylidene difluoride (SequiBlot; Bio-Rad), and stained with Coomassie brilliant blue R-250. The stained membrane was sent to Midwest Analytical (St. Louis, MO) for protein sequence analysis.
Reverse transcription-PCR (RT-PCR) analysis of prtS transcription.
Fifth-instar M. sexta insects were chilled on ice for 5 min and then injected with a 20-µl volume of phosphate-buffered saline (PBS) containing approximately 10,000 CFU of E. coli VCS257 (Stratagene) or 10 CFU of Photorhabdus sp. strains. At 2-, 4-, 12-, 24-, and 48-h time points postinjection, the Manduca insects were chilled on ice for 5 min and surface sterilized with ethanol and the hemolymph was collected by bleeding from the horn. The hemolymph was immediately frozen at –20°C for RNA collection, or dilutions were made in PBS and plated on LB agar. CFU were counted after 48 h of growth at 30°C.
Total RNA was isolated from 100-µl aliquots of hemolymph using the Qiagen RNeasy mini-RNA isolation system, by the manufacturer's protocol, with the addition of the on-column DNase treatment (Qiagen). Postcleanup, the RNA was again DNase treated by the manufacturer's protocol (Invitrogen) and suspended in a 20-µl volume.
RT-PCR was performed in a two-step reaction (ImProm II reverse transcription system; Promega), with 10 µl of purified total RNA for the initial cDNA amplification with random primers. PCR primers obtained from Operon were designed to amplify an approximately 200-nucleotide unique internal region of Photorhabdus prtS. Primers amplifying the Photorhabdus species 16S rRNA served as a PCR control. Amplification products were visualized on a 0.8% agarose gel.
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TABLE 1. Mortality and melanization of Manduca sexta injected with supernatants from different Photorhabdus strainsa
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FIG. 1. PrtS is found in abundance in Photorhabdus luminescens strain TT01 culture supernatant. Photorhabdus cultures were grown for 72 h at 30°C, and supernatant proteins were separated by 12% SDS-PAGE and stained with Coomassie blue. Lanes: A, P. asymbiotica (ATCC 43950); B, P. luminescens TT01; C, P. luminescens Hb; D, P. temperata C1; E, P. luminescens Hm. The asterisk indicates the position of PrtS.
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FIG. 2. PrtS stimulates melanization in M. sexta. (A) Coomassie blue-stained 12% SDS-polyacrylamide gel of purified PrtS (lane 1) and BSA (lane 2). (B) Photograph of M. sexta fifth-instar larvae at 71 h post-injection of 4.4 µg of PrtS (panel 1) and BSA (panel 2). The black pigment on the larva in panel 1 is an indication of melanization response.
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The identity of the 37-kDa protein was determined by MALDI-TOF analysis (Fig. 3). This approach revealed the molecular mass of nine 37-kDa-protein-specific peptides; comparison of these peptides to the TT01 published sequence (NCBI accession number NC_005126) identified the unknown protein as a predicted M4 metalloprotease encoded by plu1382, previously named PrtS (4).
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FIG. 3. Amino acid sequence of PrtS from Photorhabdus luminescens strain TT01 plu1382. The protein shown in Fig. 2 was sent for MALDI-TOF analysis. Peptides obtained from that analysis are underlined. Residues in bold are the characteristic HEXXH motif of M4 metalloproteases. The arrow denotes the last residue of the cleaved leader sequence.
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We easily purified the mutant rPrtS-E168A from E. coli by standard protocols but were unable to purify wild-type rPrtS from E. coli unless Roche Complete protease inhibitor was added to the culture medium. rPrtS-E168A and rPrtS purified in the presence of Complete protease inhibitor had the same apparent molecular mass of approximately 42 kDa, which is the predicted molecular mass of the entire protein encoded by plu1382 (41.4 kDa) plus the C-terminal histidine tag. When the protease inhibitor was removed from the rPrtS preparation by dialysis, the apparent molecular mass of rPrtS shifted to 37 kDa as determined by SDS-PAGE. This molecular mass agrees with the predicted molecular mass of PrtS isolated from the culture supernatants. The change in size of rPrtS in the absence of inhibitor suggested that an autocatalytic event was occurring. The size of rPrtS-E168A did not change when the protease inhibitor was removed, indicating that the predicted autocatalytic event was not occurring. Additional experiments demonstrated that rPrtS-E168A did not degrade azocasein (not shown), and this protein appears to be catalytically inactive.
rPrtS was able to cleave rPrtS-E168A to 37 kDa (Fig. 4). rPrtS-E168A was incubated at room temperature with 220- to 110-fold less rPrtS; aliquots were removed at 0, 2, and 18 h; and the proteins were separated by SDS-PAGE. After 2 h of incubation, approximately 50% of the rPrtS-E168A ran as the smaller protein, and at 18 h all of the rPrtS-E168A had been converted to the lower molecular mass. This cleavage was not observed if the metalloprotease inhibitor 1,10-phenanthroline was present. There was no decrease in the size of rPrtS-E168A incubated at room temperature for 18 h, again suggesting that this protein is catalytically inactive.
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FIG. 4. rPrtS is active and can cleave rPrtS-E168A. rPrtS and rPrtS-E168A were incubated at room temperature in the presence (+) and absence (–) of the metalloprotease inhibitor 1,10-phenanthroline (8 mM) for 0 h (lanes A to E), 2 h (lanes F to J), and 18 h (lanes K to M). Lanes A, F, and K are 2.2 µg rPrtS-E168A; lanes B, D, G, and I are 2.2 µg rPrtS-E168A with 0.01 µg rPrtS; lanes C, E, H, J, L, and M are 2.2 µg rPrtS-E168A with 0.02 µg rPrtS; and lane N is rPrtS used as a size control.
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Melanization is associated with the active form of PrtS.
To confirm that the black deposit that we were observing did in fact result from a melanization reaction, we obtained wild-type D. melanogaster and D. melanogaster flies that contained the Black cell mutation (Bc) and are deficient for humoral melanization (15).
Wild-type Drosophila flies injected with rPrtS developed a visible blackening at the injection site and at times a discolored body, which likely was a function of the amount of protein internalized (Fig. 5B). Wild-type Drosophila flies injected with rPrtS were immediately moribund. In contrast, wild-type flies did not melanize when injected with rPrtS-E168A at amounts equal to those of rPrtS. To illustrate the degree of melanization, we compared the color of injected flies to noninjected ebony mutant flies, which naturally have darker pigmentation (Fig. 5C). The melanization site is much darker. Finally, Bc flies injected with rPrtS did not produce a melanization reaction, as predicted since these flies lack phenoloxidase (not shown).
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FIG. 5. rPrtS but not rPrtS-E168A induces melanization in Drosophila. (A) Wild-type fly pricked with 2.6 µg µl–1 rPrtS-E168A. (B) Wild-type fly pricked with 2.6 µg µl–1 rPrtS; the arrow points to the site of injection. (C) Untreated ebony fly as color control.
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TABLE 2. Mortality of wild-type and Bc Drosophila after injection with rPrtS and rPrtS-E168Aa
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As shown in Fig. 6A, no viable E. coli bacteria were detected in the hemolymph 2 h after injection of 104 CFU. In contrast, P. luminescens grew at an exponential rate to the density of 106 CFU per 100 µl hemolymph at 48 h. At 48 h the Photorhabdus-infected M. sexta died. RT-PCR analysis indicated that at all time points postinjection the prtS transcript was present in the Photorhabdus-infected insect (Fig. 6B). Thus, PrtS is most likely produced during the active infection, when it could induce melanization in the host.
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FIG. 6. The prtS gene is transcribed during infection of M. sexta. (A) Growth of P. luminescens TT01 in M. sexta. M. sexta hemocoel was injected with either 10 CFU P. luminescens TT01 or 10,000 CFU E. coli VCS257. At indicated time points postinjection, 100 µl of hemolymph was collected from the horn of the insect and dilutions were made in PBS and plated to obtain colony counts. At 48 h postinjection with P. luminescens, the M. sexta died. (B) Detection of prtS transcript using RT-PCR. Hemolymph samples from M. sexta were collected as described above, total RNA was isolated, and RT-PCR was performed as described in Materials and Methods. Samples from three M. sexta insects per time point were examined. Hours postinjection are indicated above the horizontal lines. "0" represents hemolymph sample immediately after injection; – represents samples from uninfected controls.
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The predicted amino acid sequence of PrtS indicated that it is a member of the M4 metalloprotease family. The M4 family of metalloproteases consists of endopeptidases that share a HEXXH active site motif, where the histidines coordinate a zinc ion and the glutamate is the catalytic residue (10). Thermolysin from Bacillus thermoproteolyticus is the prototype of this family, and there are family members produced by many other bacterial species including Pseudomonas aeruginosa, Listeria monocytogenes, Legionella pneumophila, and other bacterial pathogens. Here we demonstrated that PrtS is a protease that can cleave a catalytically inactive mutant (Fig. 4) and azocasein (data not shown). We have not yet demonstrated an association with a metal ion, which is needed for a definitive assignment of this protease as an M4 family member.
M4 metalloproteases are synthesized as precursors that then cleave their N termini for activation (12). The removed N-terminal propeptide may assist in folding and secretion of the protein (14, 17). To purify active rPrtS, a protease inhibitor mix was added to the supernatants during the purification process. This approach allowed purification of a full-length protein. When the protease inhibitor was removed, the protein underwent an apparent autocatalytic event, clipping off the N-terminal 48 amino acids. We determined the N-terminal sequence of the active rPrtS to be SSDDS, which corresponds to the N-terminal sequence determined for this protein by Marokhazi et al. (13). The apparent molecular weight of the cleaved rPrtS correlated with that of the native PrtS found in culture supernatants; we are confident that this result reflects the actual N-terminal sequence of the active protein. The primary amino acid sequence of PrtS does not contain a gram-negative bacterial secretion signal peptide associated with Sec-dependent secretion systems, and yet this protein is found in Photorhabdus culture supernatants. Therefore, the mechanism used to secrete or release this protein from the bacteria remains undefined.
Injection of rPrtS into the three insect species examined here resulted in rapid accumulation of black pigment. We conclude that this discoloration indeed represents melanization, as injection into the Drosophila melanization mutant Black cells did not result in the development of the dark pigment. Melanization in the insect results from a complex enzyme cascade that results in the activation of PPO, and it is tempting to speculate that PrtS is activating one of the critical enzymes in the pathway. Work by others showed that injection of thermolysin into Galleria resulted in melanization, and the same study indicated that in vitro the Galleria PPO pathway could be activated by thermolysin (19). Therefore, it is possible that rPrtS directly activated this reaction in the insects examined here. However, death from rPrtS injection was not strictly a function of the activation of melanization, as there was significant lethality after injection of Bc flies with rPrtS. We speculate that death can occur due to the nonspecific proteolytic activity of the protein.
Many insect pathogens, including bacteria and fungi, produce proteases, and as such, insects have developed defense mechanisms to combat them. Injection of thermolysin into Galleria induces the expression of an inhibitor of metalloproteases from insects (IMPI) (19). IMPI is a component of the innate humoral immune response of this insect and is induced in Galleria in response to microbial invasion. This protein is inhibitory not only to thermolysin but to other metalloproteases as well. In addition, Photorhabdus itself secretes a factor, named Inh, that is inhibitory to metalloproteases (18). This suggests that expression and inhibition of protease activity are important factors in the insect-pathogen interaction.
P. luminescens is found only in association with either the insect or the nematode host, and most likely PrtS is produced specifically to aid the bacterium-host interaction. We demonstrate here that the prtS transcript is present when P. luminescens is growing in an insect, and it is present before the insect expires. PrtS could have a number of virulence-associated roles in the infected insect. It is possible that Photorhabdus produces PrtS simply to damage the insect host and increase colonization by both the bacterium and the nematode. PrtS cleaves insect antibacterial peptides, and this activity might be the primary function (4). Photorhabdus might produce PrtS to generate small peptides as a source of amino acids. Lastly, the rapid induction of the melanization reaction suggests that one function of PrtS might be to overinduce and confuse the insect's innate immune response as a mechanism to evade this response. A recent report indicates that P. luminescens produces a small-molecule antibiotic that inhibits phenoloxidase, a critical enzyme in the melanization pathway (7a). It appears that P. luminescens attempts to manipulate this important insect innate immune response to promote its own growth and survival. The exact sequence of events involved in this manipulation is still to be determined.
This work was supported by start-up funds from the University of Washington to C.M.C.
Published ahead of print on 12 October 2007. ![]()
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