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Applied and Environmental Microbiology, December 2007, p. 7844-7852, Vol. 73, No. 24
0099-2240/07/$08.00+0 doi:10.1128/AEM.01543-07
Copyright © 2007, American Society for Microbiology. All Rights Reserved.

Carola Holmström,1,2
Rebecca Case,1,2
Adrian Low,1,2
Peter Steinberg,2,3 and
Staffan Kjelleberg1,2*
School of Biotechnology and Biomolecular Sciences,1 Centre for Marine Bio-innovation, School of Biological, Earth and Environmental Sciences,2 University of New South Wales, Sydney, New South Wales 2052, Australia3
Received 9 July 2007/ Accepted 15 October 2007
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As well as being a common fouling organism, the intertidal green alga Ulva australis is itself susceptible to fouling because it is sessile and restricted to the photic zone, where conditions for fouling organisms are optimal (13). Many seaweeds have evolved efficient strategies to combat epibiosis (14, 17, 41), but these antifouling defenses can be energetically costly (72), and it has been suggested that epibiotic bacteria living on the surface of the alga may provide microbial defense (3, 18, 19, 33). Such interactions are not uncommon in the marine environment (16, 24, 25, 28). A number of inhibitory bacteria have been isolated from U. australis, and one of the best characterized of these is Pseudoalteromonas tunicata (18, 20, 32). This bacterium produces a diverse range of biologically active compounds that specifically target marine fouling organisms (19, 23, 30, 32, 33, 38) and gram-negative and gram-positive bacteria from a range of environments (48). Phaeobacter sp. strain 2.10 (formerly Roseobacter gallaeciensis) is also frequently isolated from the surface of U. australis and has known antibacterial activity (4, 58, 61). Members of the Roseobacter clade are frequently associated with algae (8) and can comprise up to 25% of microbial communities in coastal environments (71).
Molecular investigations based on real-time quantitative PCR have shown that while the genus Pseudoalteromonas is common throughout the marine environment, P. tunicata mostly inhabits living surfaces that are relatively free from fouling such as green algae (Ulva lactuca and Ulvaria fusca) and tunicates (Ciona intestinalis) (65) and has low in situ density (<1 x 103 cells cm–2) (66). Studies based on a method combining catalyzed reporter deposition with fluorescence in situ hybridization suggested that Phaeobacter sp. strain 2.10 may be present in higher numbers, as the genus Roseobacter comprised 12% of the epiphytic bacterial community on U. australis (unpublished data).
Although the inhibitory effects of P. tunicata against a range of fouling organisms in the laboratory are well established (18, 31), the observation that P. tunicata is present at such low densities raises the question as to whether it could in fact have antifouling activity at these densities in the marine environment. In this study, we tested the density dependence of antifouling activity of P. tunicata and Phaeobacter sp. strain 2.10 biofilms and show that they have inhibitory effects at ecologically relevant densities. Furthermore, the inhibition of algal spores and larval settlement by P. tunicata biofilms is shown to be due to the production of antifouling compounds, as mutants defective in the production of the extracellular inhibitors do not display inhibitory activity. Inhibition of settlement and attachment by Phaeobacter sp. strain 2.10 biofilms is through an unknown mechanism. However, Phaeobacter sp. strain 2.10 produces the density-dependent signal molecules acyl homoserine lactones (AHLs), which are also settlement cues for Ulva sp. spores (40). This suggests that AHLs may play a role in mediating the relationship between U. australis and quorum-sensing bacterial epiphytes capable of defending the alga. Our data support the hypothesis that P. tunicata and Phaeobacter sp. strain 2.10 play a role in defending U. australis against fouling in situ.
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Establishment of biofilms.
Bacteria were cultured for 24 h at 25°C in VNSS broth for preparation of inocula. Cells were harvested by spinning down the culture and resuspending the pellet in seawater. The cell concentration was estimated by counting using epifluorescence microscopy and a hemocytometer and adjusted by dilution with seawater to the desired end concentration. Biofilms were established by inoculation from overnight precultures into 3.6-cm petri dishes containing 3 ml of 10% VNSS medium (diluted in seawater) and incubated at 23°C for 24 h. Different densities of cells were inoculated so that the final density of attached cells on the surface of the petri dishes ranged from 102 to 108cells cm–2. After 24 h of incubation, growth medium was discarded and established biofilms were rinsed three times with sterile filtered seawater and incubated in fresh sterile seawater before the bioassays were conducted. Numbers of attached cells were determined by counting the number of DsRed- or GFP-labeled cells with epifluorescence microscopy and an eyepiece grid. Twenty-four-hour-old biofilms were used for antifouling assays as older biofilms undergo a certain amount of detachment and sloughing, which affected cell densities. The biofilm densities were measured after the assays to establish whether the density had changed. Preliminary experiments indicated that cell densities in biofilms did not increase significantly over the course of the experiment, particularly for the lower densities. For all assays, three experiments were carried out with at least four replicates in each treatment.
Antialgal bioassays.
The effects of different cell densities of bacteria on attachment and survival of algal propagules were assessed by exposing gametes or spores directly to monoculture biofilms of P. tunicata and Phaeobacter sp. strain 2.10 at densities ranging from 102 to 108 cells cm–2. Sterile seawater and P. tunicata WmpR mutant biofilms established at 106cells cm–2 served as controls for P. tunicata biofilms. Sterile seawater was the control for Phaeobacter sp. strain 2.10.
U. australis gamete and Polysiphonia sp. spore bioassays were set up as described by Egan et al. (19). U. australis gamete settlement was assessed after 5 days using an inverted light microscope (Zeiss). Counts were conducted in 10 fields of view using a x40 magnification, and settlement was compared to that in controls. Polysiphonia sp. spore settlement and subsequent development were assessed after 24 h, the numbers of settled (i.e., attached) and unsettled spores were counted using a dissecting microscope, and the percentage of settlement was determined.
(i) Detection of AHLs.
P. tunicata and Phaeobacter sp. strain 2.10 were screened for AHL production using a streak assay and the AHL reporter strain, Agrobacterium tumefaciens A136. Briefly, plates were poured with one medium and set, and half of the medium was aseptically removed and replaced with a second medium. This was done because P. tunicata, Phaeobacter sp. strain 2.10, and A. tumefaciens A136 require different growth media. A. tumefaciens A136 was grown on LB5 plates (2) supplemented with tetracycline (4.5 µg/ml), spectinomycin (50 µg/ml), and X-Gal (5-bromo-4-chloro-3-indolyl-β-D-galactopyranoside [50 µg/ml]). Marine strains grew on marine broth 2216 supplemented with 1.5% agar.
Following a positive result in the AHL streak assay, AHLs were further characterized with thin-layer chromatography (TLC) plates overlaid with A. tumefaciens A136. To extract AHLs from P. tunicata and Phaeobacter sp. 2.10, the strains were grown to stationary phase in 10 ml of marine broth 2216. These 10-ml cultures were sterile filtrated (0.22 µm), and the supernatants were retained. AHLs were extracted from the supernatants as described by Ravn et al. (60), the AHL extracts were resuspended in 100 µl of acidified ethyl acetate, and 40 to 80 µl of each sample was applied to C18 TLC plates (TLC aluminum sheets, 10 by 10 cm2, Rp-18 F254 s,1.05559 [Merck 64271]) and developed in 60:40 methanol-Milli-Q water as described by Shaw et al. (63). A lawn of A. tumefaciens A136 in AB medium was overlaid on the TLC plate as described by Ravn et al. (60). AHLs were compared against commercial standards 3-oxo-hexanoyl homoserine lactone (OHHL), N-oxo-octanoyl-L-homoserine lactone (OOHL), and N-octanoyl-homoserine lactone (OHL), and Rf values were calculated (56). AHLs were identified based on Rf values and the shape of spots.
(ii) AHLs as settlement cues.
To determine if AHLs were involved in enhancing settlement of U. australis gametes, an assay was conducted with different concentrations of the C8-AHL, OOHL. OOHL was used because unsubstituted C7-AHL is not commercially available and AHLs with a carbon chain length of <6 are freely diffusible in water and those with a length of >10 have markedly lower solubility (55). OOHL was suspended in a 1% agarose-distilled water support matrix as described in reference 70 at concentrations of 5, 10, 20, and 50 µM, respectively. A control of 50 µM methanol in 1% agarose was used. Gamete attachment was assessed after 1 h, using an inverted light microscope (Zeiss). Gametes were stained with crystal violet, counts were conducted in 10 fields of view using a x40 magnification, and settlement was compared to that in controls.
Antilarval assays.
P. tunicata and Phaeobacter sp. strain 2.10 at a range of densities were tested using standard settlement assays of larvae of the bryozoan Bugula neritina (7). Adult broodstocks of B. neretina were collected from pilings at Rose Bay, Sydney, Australia (33°87'52"S, 151°25'56"E) and larvae were obtained as described by de Nys et al. (13) and Bryan et al. (7). Only newly released larvae were included in the bioassay (i.e., within 15 min of release). Biofilms were established as described above, petri dishes were rinsed three times with 2 ml of sterile seawater, and then 3 ml of filtered seawater containing approximately 20 larvae was added to each petri dish and incubated at 25°C for 2 days. Larvae were counted under a dissecting microscope, and the percentage of settlement was determined. Control petri dishes contained either sterile seawater alone (for both P. tunicata and Phaeobacter sp. strain 2.10) or the P. tunicata WmpR mutant's biofilm with cell densities of 106 cells ml–1 (control for P. tunicata).
Antifungal assays.
Both yeast and filamentous fungi were used to assess the antifungal activity of P. tunicata and Phaeobacter sp. strain 2.10. Unidentified marine yeast (Y1, Y2, and Y3) and a filamentous fungal (Y4) strain previously isolated from U. australis (21) were used as target strains. Fungal strains were maintained on VNSS plates and inoculated into VNSS broth. Bacterial biofilms were established as described earlier, petri dishes were rinsed three times with 2 ml of sterile seawater, and 2 ml of medium (10% VNSS-90% seawater) containing 105cells ml–1 of fungi was added and incubated for 48 h. The fungi were stained with Syto 59, and the percentage of fungal surface cover was compared to that of the original inoculum by epifluorescence microscopy. Biofilms of P. tunicata FM3 and WmpR mutant cells established at 106 cells cm–2 served as controls. Counts were done on 10 fields of view using a x40 magnification.
Antibacterial assays.
Marine strains isolated from U. australis were used as target strains to test for antibacterial activity of P. tunicata and Phaeobacter sp. strain 2.10 biofilms established on plastic surfaces. The bacterial challenge strains consisted of C. fucicola, Alteromonas sp., Phaeobacter sp. strain 2.10, P. tunicata, and P. gracilis. Biofilms of P. tunicata, and Phaeobacter sp. strain 2.10 were established and challenged with test bacteria added to the biofilms at 106 cells ml–1 and incubated for 48 h. P. tunicata AlpP and WmpR mutant biofilms and culture media were used as controls for P. tunicata, while culture medium was the control for Phaeobacter sp. strain 2.10. DsRed-labeled challenge strains were readily distinguished from GFP-labeled biofilm bacteria by epifluorescence microscopy. Counts were done on 10 fields of view using a x10 magnification.
Statistical analysis.
One-way analysis of variance (ANOVA) followed by Tukey's pairwise comparisons were used to compare the settlement of spores or larvae and attachment of bacteria or fungi in response to various densities of P. tunicata and R. gallaeciensis. ANOVA assumptions of normality and heterogeneity of variance of the data were checked. Tests were conducted with Systat 10 (SPSS).
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FIG. 1. Percentage of settlement (mean ± standard error; n = 4) of spores of Polysiphonia sp. after 24 h of incubation with P. tunicata biofilms established at different densities on plastic petri dishes. Sterile seawater served as a negative control, and a P. tunicata WmpR mutant biofilm established at 106 cells cm–2 was the positive control. Densities sharing the same letter do not differ at P = 0.05 (Tukey's multiple comparison test).
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FIG. 2. Percentage of settlement (mean ± standard error; n = 5) of spores of Ulva australis after 5 days of incubation with P. tunicata biofilms established at different densities on plastic petri dishes. Sterile seawater served as negative control, and a P. tunicata WmpR mutant biofilm established at 106 cells cm–2 was the positive control. Densities sharing the same letter do not differ at P = 0.05 (Tukey's multiple comparison test).
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Phaeobacter sp. strain 2.10 did not inhibit U. australis gamete settlement: in fact, it mildly stimulated spore settlement at high cell densities (Fig. 3; ANOVA, F7, 32 = 4.00, P < 0.001). Joint et al. (39, 40) have shown that the bacterial quorum-sensing molecules, AHLs, enhance Ulva sp. zoospore settlement. Therefore, we tested Phaeobacter sp. strain 2.10 for production of AHLs and detected one AHL by using TLC plates overlaid with the AHL reporter strain A. tumefaciens A136. The AHL produced by Phaeobacter sp. strain 2.10 is tentatively identified as an unsubstituted C7-AHL with an Rf value of 0.38. Many species belonging to the Roseobacter clade have recently been identified as producing AHLs (5, 6); however, the role of quorum sensing in any of these species is yet to be elucidated. Because Ulva sp. spores are chemotactic to AHLs, this suggests that quorum-sensing species have a beneficial relationship with Ulva spp. While many quorum-sensing species are pathogens, some quorum-sensing bacteria act as biocontrol strains for terrestrial plants (9, 45).
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FIG. 3. Percentage of settlement (mean ± standard error; n = 5) of spores of Ulva australis after 5 days of incubation with Phaeobacter sp. strain 2.10 biofilms established at different densities on plastic petri dishes. Sterile seawater served as negative control. Densities sharing the same letter do not differ at P = 0.05 (Tukey's multiple comparison test).
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Invertebrate larval settlement.
Biofilms of P. tunicata on plastic surfaces also inhibited settlement of B. neretina larvae at relatively high densities (105 to 106 cells per cm–2) (Fig. 4; ANOVA, F8, 36 = 166.09, P < 0.001). P. tunicata has previously been shown to exhibit antilarval effects at high densities on polystyrene plates (33). Previous studies have demonstrated that members of the genus Pseudoalteromonas can both inhibit (16, 31, 46) and induce (47, 53) larval settlement.
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FIG. 4. Percentage of settlement (mean ± standard error; n = 5) of Bugula neretina larvae after 48 h of incubation with P. tunicata biofilms established at different densities on plastic petri dishes. Sterile seawater served as negative control, and a P. tunicata WmpR mutant biofilm established at 106 cells cm–2 was the positive control. Densities sharing the same letter do not differ at P = 0.05 (Tukey's multiple comparison test).
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FIG. 5. Percentage settlement (mean ± standard error; n = 5) of Bugula neretina larvae after 48 h of incubation with Phaeobacter sp. strain 2.10 biofilms established at different densities on plastic petri dishes. Sterile seawater served as a control. Densities sharing the same letter do not differ at P = 0.05 (Tukey's multiple comparison test).
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Many studies have stressed the importance of biofilm age in influencing the settlement of larvae or algal propagules (1, 26, 34, 44, 64). However, the rate of settlement reported in these studies seems to correlate with the density of cells, which generally increases with the age of the biofilm. Although changes in cell densities were generally not monitored in these studies, as biofilms grew older, the older the biofilms, the higher the level of induction (1, 26, 34, 44, 64) or inhibition (10, 51). Thus, some invertebrate larvae are able to discriminate between the ages of biofilms as induction or inhibition levels correlate with bacterial cell densities.
A recent study demonstrated that bacterial strains that induce a high level of settlement in the sea urchin Heliocidaris erythrogramma were dominated by the genera Pseudoalteromonas, Shewanella, and Vibrio. These genera were effective at inducing settlement, despite being present at low densities on seaweed surfaces (<1 x 105 cells cm–2) and representing only a small percentage of the total bacterial community (36). Field recruitment of H. erythrogramma correlated with laboratory settlement assays, suggesting that cues were present at a concentration that larvae were able to detect and respond to.
Fungal colonization.
P. tunicata at a range of densities was able to inhibit fungal growth of all three yeast strains (Y1, Y2, and Y3). P. tunicata inhibited the yeast at densities as low as 102 to 103 cells per cm–2 (Fig. 6), suggesting that the antifungal compound is effective at very low concentrations. Y4, a filamentous fungus, was not inhibited by P. tunicata biofilms, and its mycelia extended over the microcolonies. In contrast, the P. tunicata antifungal mutant (FM3) did not affect the attachment of any of the fungal strains in the control biofilm. The results are further supported by the study conducted by Franks et al. (22), who observed that P. tunicata fully inhibited the attachment of Y1 (identified as Rhodosporidium sphaerocarpum) after 24 h of growth in a glass flow cell, whereas the antifungal mutant, FM3, had no inhibitory effect. Furthermore, P. tunicata was able to invade and disrupt an established biofilm of Y1. Purification of the broad-spectrum antifungal component has shown it to be a novel tambjamine molecule (23). In contrast, Phaeobacter sp. strain 2.10 had no antifungal activity at any of the densities tested (102 to 108cells cm–2) (data not shown), and there are no reports of inhibition of fungi by Roseobacter spp. in the literature.
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FIG. 6. Attachment (percent surface cover [mean ± standard error; n = 5]) of marine fungi after 48 h of incubation with P. tunicata biofilms established at different densities on plastic petri dishes. Sterile culture medium (10% VNSS) served as a negative control, and P. tunicata FM3 and WmpR mutant biofilms established at 106 cells cm–2 were the positive controls.
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Biofilms of Phaeobacter sp. strain 2.10 were very effective in preventing the attachment of other bacterial strains, including P. tunicata. Densities as low as 103 cells cm–2 were able to prevent growth of marine bacteria (Fig. 7). This result is consistent with competition studies conducted in glass flow cells (58). Roseobacter strains have been found to display strong in vitro antagonism (4, 29, 61), which is attributed to the production of at least two antibacterial compounds, a peptide (61) and tropodithietic acid (4).
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FIG. 7. Attachment (percent surface cover [mean ± standard error; n = 5]) of marine bacteria after 48 h of incubation with Phaeobacter sp. strain 2.10 biofilms established at different densities on plastic petri dishes. Sterile culture medium (10% VNSS) served as a control.
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Skovhus and coworkers (66) showed that P. tunicata is present in very low numbers in the environment, estimating that the absolute abundance of the antifouling clade within the Pseudoalteromonas genus (P. tunicata and P. ulvae) was 1 x 103 cells cm–2. Despite the low density of P. tunicata in the environment, the results presented here confirm that low cell densities P. tunicata are effective at inhibiting settlement of antifouling organisms. Holmström and coworkers (30) demonstrated that 8 of the 10 tested Pseudoalteromonas spp. contained at least one of the four tested antifouling properties: growth inhibition of bacteria or fungi and settlement inhibition of algal spores or invertebrate larvae. It is likely that the antifouling protection of U. australis by bacterial epiphytes consists of several surface-associated Pseudoalteromonas spp. and other inhibitory bacteria, such as Phaeobacter sp. strain 2.10, working as an antifouling consortium, rather than a specific symbiosis with one bacterial epiphyte protecting U. australis. Thus results obtained here suggest that key organisms in an antifouling strategy do not need to be dominant within the epiphytic community in order to have an impact on the colonization of fouling organisms.
Although our data support the contention that natural densities (e.g., 102 to 103) of P. tunicata inhibit colonization of its host's surface, an important caveat is that biofilms established in petri dishes are poor mimics of natural conditions and metabolites may accumulate, in contrast to the field, where they may be dispersed. The importance of relating responses to biologically relevant concentrations has previously been stressed (67), but it is as yet difficult to estimate ecologically relevant concentrations when the microscale localization of these metabolites is not known (15).
It is proposed that the bacteria examined in the present study participate in the antifouling defense, with Phaeobacter sp. strain 2.10 being more effective at inhibiting larvae and bacteria and P. tunicata being more effective against algal spores and fungi. Hence, it appears that U. australis may require both P. tunicata and Phaeobacter sp. strain 2.10 for an effective antifouling strategy. A diverse range of bacteria induce the same settlement response in sea urchin larvae, suggesting redundancy in the function of bacteria on the surface of coralline algae (35-37). Results reported here indicate that although some redundancy in antifouling defense exists within a consortium of Phaeobacter sp. strain 2.10 and P. tunicata, they appear to provide complementary benefits to the host, by targeting different fouling organisms. Thus, a range of epiphytic bacteria that produce bioactives, such as those studied here, can often enhance host fitness.
We thank A. Franks for fungal strains, S. Egan for antifouling mutant strains, N. Tujula for assistance in the field, and N. Paul for help with statistics.
Published ahead of print on 26 October 2007. ![]()
Present address: School of Biological Sciences, University of Southampton, Southampton SO16 7PX, United Kingdom. ![]()
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