Files in this Data Supplement:

• Supplemental file 1 - Comparison of ISSod9-like transposons in Shewanella oneidensis MR-1, S. frigidimarina, and Shewanella sp. strain ANA-3 (Fig. S1).
  PDF document, 329K.
• Supplemental file 2 - Phylogenetic distribution of BLASTP top hits in S. oneidensis MR-1 (Fig. S2a).
  PDF document, 360K.
• Supplemental file 3 - Distribution of GC usage in codon 3 for protein-encoding genes (Fig. S2b).
  PDF document, 260K.
• Supplemental file 4 - Alignment of various Shewanella algA upstream loci demonstrating that the analogous locus in S. oneidensis MR-1 is displaced (Fig. S3).
  PDF document, 13K.
• Supplemental file 5 - Ensemble centroid structure for a full-length SonMITE_2 element (Fig. S4a).
  PDF document, 245K.
• Supplemental file 6 - Two alternate structures for SonMITE_3 (Fig. S4b).
  PDF document, 286K.
• Supplemental file 7 - Status of Shewanella genome sequencing projects (Table S1).
  MS Excel file, 22K.
• Supplemental file 8 - Listing of original pseudogene predictions that have changed status (Table S2).
  MS Excel file, 36K.
• Supplemental file 9 - Characteristics of IS and SonMITE elements (Table S3).
  MS Excel file, 36K.
• Supplemental file 10 - Characteristics of genes predicted to have been acquired by lateral transfer and sequences of downstream attC sites (Table S4).
  MS Excel file, 30K.
• Supplemental file 11 - Positioning of SonMITE elements in the genome and spacing to adjacent genes (Table S5).
  MS Excel file, 38K.
• Supplemental file 12 - Characteristics of 207 pseudogenes (Table S6).
  MS Excel file, 81K.
• Supplemental file 13 - Listing of genes dropped from the annotation (Table S7).
  MS Excel file, 155K.
• Supplemental file 14 - Listing of genes downstream to repeats and mobile elements (Table S8).
  MS Excel file, 26K.