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Applied and Environmental Microbiology, June 2008, p. 3682-3689, Vol. 74, No. 12
0099-2240/08/$08.00+0 doi:10.1128/AEM.00247-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
s1- and β-Casein Breakdown and Release of a Bioactive Peptide by a Cell Envelope Proteinase from Lactobacillus delbrueckii subsp. lactis CRL 581
Centro de Referencia para Lactobacilos (CERELA-CONICET), 4000 San Miguel de Tucumán, Argentina,1 Centro di Spettrometria di Massa Proteomica e Biomolecolare, ISA-CNR, Via Roma 52A-C, 83100 Avellino, Italy,2 Dipartimento di Scienza degli Alimenti, University of Naples Federico II, Parco Gussone, 80055 Portici, Italy3
Received 28 January 2008/ Accepted 10 April 2008
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s1- and β-casein hydrolysates, respectively. By characterizing the peptide sequence in these hydrolysates, a pattern of
s1- and β-casein breakdown was defined and is reported herein, this being the first report for a CEP of L. delbrueckii subsp. lactis. In this pattern, a series of potentially bioactive peptides (antihypertensive and phosphopeptides) which are encrypted within the precursor protein could be visualized. |
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The proteolytic system of lactococci is the best documented among LAB (10, 18, 22, 23, 28, 29, 31). The results of early experiments showed that in Lactococcus lactis, the synthesis of the cell wall proteinase PrtP during cell growth in peptide-rich medium is reduced compared to the rates of synthesis in milk or whey permeate medium with relatively low concentrations of peptides (18, 28). More recently, it has been demonstrated that the expression of several transcriptional units of the lactococcal proteolytic system, including prtP, was repressed in the presence of rich nitrogen sources, such as casein hydrolysates, Casitone, or Casamino Acids (9, 10, 35); the pleiotropic transcriptional regulator CodY was responsible for the repression of these proteolytic components (3, 11, 35).
CEPs of thermophilic lactobacilli have been isolated and characterized, mainly from Lactobacillus delbrueckii subsp. bulgaricus and Lactobacillus helveticus (8, 27, 34, 37). The genes encoding proteinases from L. delbrueckii subsp. bulgaricus (8), Lactobacillus rhamnosus (33), Lactobacillus acidophilus (1), L. helveticus (34, 43), and Lactobacillus paracasei subsp. paracasei (17) have been identified. However, with the exception of PrtH of L. helveticus (14, 39), PrtB of L. delbrueckii subsp. bulgaricus (25), and PrtR of L. rhamnosus (33), no information is available about the regulation of proteinase production in lactobacilli. The synthesis of these enzymes was controlled by the peptide content of the growth medium (14, 33). The highest proteinase levels of L. helveticus CRL 1062 PrtH were found during cell growth in a simplified chemically defined medium (SCDM), while the synthesis of this enzyme was inhibited in SCDM supplemented with Casitone, Casamino Acids, or the dipeptide leucylproline (LP) (14). Recently, array data identified genes of L. helveticus CNRZ 32 encoding cell envelope proteinases, oligopeptide transporters, and endopeptidases that were upregulated during growth in milk compared to their levels of expression in MRS medium (Biokar Diagnostics, France) (39).
L. delbrueckii subsp. lactis CRL 581, a thermophilic lactic acid bacterium isolated from Argentinian homemade hard cheese, synthesizes a CEP which has been partially characterized (15). Little information is available about the regulation of CEP biosynthesis in cells growing in the environmental conditions encountered in biomanufacturing and dairy products. In this sense, we studied the effects of various nitrogen sources, osmolites, and carbohydrates (lactose and its monosaccharide components) on the CEP of L. delbrueckii subsp. lactis CRL 581. Furthermore, we carried out a structural analysis of the peptides generated by this proteinase from
s1- and β-caseins, tracing the pattern of its casein breakdown.
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The low-molecular-mass (3,000 Da) peptides (LMMP) of Casitone (Difco Laboratories, Sparks, MD) were separated from the high-molecular-mass peptides (HMMP) by centrifugal filtration (3,000 x g) using filter units with a nominal molecular-mass limit of 3,000 Da (Centricon-3 concentrators; Amicon, Beverly, MA).
When indicated, MDM was supplemented with different nitrogen sources, such as 0.2 and 1% (wt/vol) Casitone (Difco), 0.2 and 1% (wt/vol) Casamino Acids (Difco), 1% (wt/vol) yeast extract (Difco), 0.3 mg/ml
s1-casein (Sigma Chemical Co., St. Louis, MO), 0.3 mg/ml β-casein (Sigma), 1% (wt/vol) LMMP, 1% (wt/vol) HMMP, or the following di- and tripeptides (final concentrations, 1 and 5 mM; Sigma): glycylmethionine (GM), glycylproline (GP), glycyltyrosine, leucylleucine (LL), LP, prolylalanine (PA), prolylleucine (PL), tyrosylglycine, and leucylglycylglycine (LGG).
Working cultures of L. delbrueckii subsp. lactis were propagated in MRS broth (Biokar Diagnostics, France) at 40°C for 16 h. To eliminate carryover nutrients, the cells were harvested by centrifugation at 8,000 x g for 15 min, washed twice in sterile 50 mM sodium phosphate (pH 7.0), and resuspended in this buffer to the original volume. This cell suspension was used to inoculate the different media at an initial optical density (Cary 50; Varian, Inc., Australia) at 560 nm (OD560) of 0.07. Bacterial growth was monitored by measuring the OD560.
Water activity measurements.
The water activity of culture medium containing 1% (wt/vol) lactose, glucose, or galactose; 5% (vol/vol) glycerol; or 0.25, 0.5, or 1% (wt/vol) NaCl was measured at 40°C by using a Thermoconstanter TH200 instrument with a TH temperature controller (0 to 50°C setting range), a BSK sensor, and an RTD-200 transmitter with a humidity range of water activity values from 0.05 to 1.00 (Novasina AG, Zürich, Switzerland). The humidity equilibrium was read until the measurements remained unchanged (after 48 h).
Proteinase activity assay.
Cells grown in the different media were harvested by centrifugation (10,000 x g for 10 min at 4°C) at the exponential growth phase (OD560, 0.90), washed twice with 0.85% (wt/vol) saline supplemented with 10 mM CaCl2, and resuspended to a final OD560 of approximately 10 in 100 mM sodium phosphate buffer (pH 7.0). The proteinase activity of whole-cell suspensions was measured by a modification of the assay described previously (4) by the use of the chromogenic substrate succinyl-alanyl-alanyl-prolyl-phenylalanine-p-nitroanilide (Sigma). The assay mixture, containing 214 µl of 50 mM sodium phosphate buffer (pH 7.0), 112 µl of 5 M NaCl (final concentration, 1.5 M), 19 µl of 20 mM substrate, and 30 µl of the cell suspension, was incubated at 40°C for 10 min. The reaction was stopped by adding 188 µl of 80% acetic acid, and the samples were centrifuged (10,000 x g for 5 min). The released nitroaniline was measured at 410 nm by using a VERSAmax microplate reader (Molecular Devices Corp., Sunnyvale, CA). One unit of proteinase was defined as the amount required to liberate 1 µmol of nitroaniline per minute. Specific activity was expressed as units of proteinase per mg protein. The protein concentration was determined by using a protein assay according to the manufacturer's instructions (Bio-Rad Laboratories, Richmond, CA). The level of cell lysis was determined by following the release of lactate dehydrogenase (LDH) with the method of Thomas (41).
Casein hydrolysis.
Washed cells, harvested from the different media as indicated above, were suspended in 100 mM sodium phosphate buffer (pH 7.0). The suspensions were allowed to utilize the residual intracellular amino acids for 30 min at 40°C before casein degradation was carried out as described previously (14). Briefly, washed whole cells (OD560, 10) were mixed with 5 mg/ml of substrate dissolved in 100 mM sodium phosphate (pH 7.0) at a ratio of 1:1. As substrate,
s1-, β-, or
-casein (Sigma) was used. These starting substrates were previously characterized by using matrix-assisted laser desorption ionization-time of flight mass spectrometry (MALDI-TOF-MS) to assess their purity. The resulting mixtures were incubated at 40°C. After various time intervals (0.25, 0.5, 1, 2, and 4 h), samples were centrifuged (10,000 x g for 10 min at 4°C) and the supernatants were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) as described previously (24). Either Coomassie brilliant blue R-250 or silver staining (Bio-Rad) was used to visualize the proteins after SDS-PAGE.
LC-ESI-MS protein analysis.
Liquid chromatography (LC) was performed by using a 2.1-mm-inner-diameter by 250-mm, C18, 5-mm reverse-phase (RP) column (Vydac, Hesperia, CA) with a flow rate of 0.2 ml/min on an HP1100 modular system (Agilent, Palo Alto, CA). Solvent A was 0.1% trifluoroacetic acid (TFA) (vol/vol) in water; solvent B was 0.1% TFA (vol/vol) in acetonitrile. The column was equilibrated at 5% solvent B. Separation of the peptides was effected with a gradient of 5% to 60% solvent B over 90 min. The column effluent was monitored by UV detection (220 nm), and each peak was manually collected. For high-pressure LC (HPLC) with positive ionization (electrospray ionization [ESI]) MS (LC-ESI-MS), the effluent from the column was injected on-line into a Platform (Micromass, England) MS equipped with a standard electrospray source via a 75-µm-inner-diameter fused-silica capillary. The mass spectra from 1,800 to 300 atomic mass units were scanned with a scan cycle of 5 s/scan. The source temperature was held at 180°C and the cone voltage at 40 V. The mass-scale calibration was obtained by using myoglobin as a reference compound.
ESI-MS-MS.
Tandem MS (MS-MS) data were obtained by using a Q-STAR MS (Applied Biosystems, Foster City, CA) equipped with nanospray interface (Protana, Odense, Denmark). Dried samples were resuspended in 0.1% TFA, desalted by using ZipTip C18 microcolumns (Millipore, Billerica, MA), and sprayed from gold-coated "medium-length" borosilicate capillaries (Protana). The capillary voltage used was 800 V. Double-charged ion isotopic clusters were selected by using the quadrupole mass filter and then induced to fragment by collision. The collision energy was 20 to 40 eV, depending on the size of the peptide. The collision-induced dissociation was processed by using Analyst 5 software (Applied Biosystems). The deconvoluted MS-MS spectrum was manually interpreted with the help of Analyst 5 software.
MALDI-TOF-MS analysis.
MALDI-TOF-MS experiments were carried out on a PerSeptive Biosystems (Framingham, MA) Voyager DE-PRO instrument equipped with an N2 laser (337-nm, 3-ns pulse width). Each spectrum was taken by using the following procedure: a 0.5-µl aliquot of the digest solution was loaded onto a stainless steel plate together with 0.5 µl of
-cyano-4-hydroxycinnamic acid matrix (1 g in 1 ml aqueous 50% acetonitrile). Mass spectrum acquisition was performed in both positive linear and reflectron mode by accumulating 200 laser pulses. The accelerating voltage was 20 kV. External mass calibration was performed with peptide mass standards (Sigma).
Peptide recognition.
Signals recorded in the mass spectra were associated with the corresponding peptides based on the molecular weight by using PeptideTools software (Agilent).
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FIG. 1. Growth (OD560), pH, and CEP specific activity of L. delbrueckii subsp. lactis CRL 581 grown in MDM. The LDH activity determined in the whole-cell suspensions was less than 1% of the total cell LDH activity, indicating that the proteolytic activity detected was due to the action of CEP. Error bars show standard deviations.
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s1-casein had no significant effect on CEP biosynthesis (Table 1). The influence of
s1- and β-casein hydrolysates, obtained by the action of CRL 581 proteinase, on CEP synthesis was similar to that observed with whole
s1- and β-caseins, respectively (data not shown). These data suggest that the hydrolysis of the main milk proteins by CEP of L. delbrueckii subsp. lactis CRL 581 might not greatly affect its production during cell growth. |
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TABLE 1. CEP activity of L. delbrueckii subsp. lactis CRL 581 grown in MDM and MDM containing different peptide supplies
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TABLE 2. CEP activity of L. delbrueckii subsp. lactis CRL 581 grown in MDM supplemented with different peptides
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Effects of carbon source and osmolites on proteinase activity.
The influence of the carbon source on CEP synthesis was tested after cell growth in MDM containing glucose, galactose, or lactose. Cell cultures of L. delbrueckii subsp. lactis CRL 581 grown in MDM containing lactose or glucose displayed similar growth rates (µ, 0.35 h–1), while cell growth on galactose was limited (µ, 0.12 h–1), with a prolonged lag phase. However, the proteinase specific activity values were independent of the carbon source (Table 3).
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TABLE 3. CEP activity of L. delbrueckii subsp. lactis CRL 581 grown in MDM and MDM supplemented with different sugar sources and osmolites
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Casein hydrolysis and cleavage-site specificity.
The ability of L. delbrueckii subsp. lactis CRL 581 to hydrolyze
s1-, β-, and
-caseins was tested after cell growth in MDM. Degradation of
s1- and β-caseins was already observed in the first 15 min of incubation, and they were completely digested after 4 h (Fig. 2). During the course of the reactions (from 0 to 4 h), the relative amounts of the cleavage products of
s1- and β-caseins changed significantly, as several degradation bands could be visualized (Fig. 2). Contrariwise,
-casein was not hydrolyzed by L. delbrueckii subsp. lactis CRL 581 CEP (data not shown). Therefore, according to the substrate specificity, this proteinase has a caseinolytic activity comparable to that of the PIII-type lactococcal proteinases (5, 22). This caseinolytic specificity of CRL 581 CEP differed from that observed for L. delbrueckii subsp. lactis ACA-DC 178, which hydrolyzed β-casein predominantly and
s1- and
-caseins at much lower rates (43). The hydrolysis of
s1- and β-caseins by the CEP of L. delbrueckii subsp. lactis CRL 581 after 4 h of incubation at 40°C was analyzed by RP-HPLC (Fig. 3). The main RP-HPLC peaks were collected and identified by MS analysis. Thirty-three and 32 peptides were identified in the
s1- and β-casein hydrolysates, respectively (Table 4 and Fig. 4). The
s1-casein hydrolysate contained peptides with from 4 to 44 amino acids (388.16 to 5,595.31 Da), including five phosphorylated peptides (Gln52 to Glu96, Ser75 to Gln82, Glu110 to His121, Ser115 to His121, and Ser115 to Met123). This is considerably more than the 2 and 10 peptides which have been previously described for L. helveticus CNRZ 303 (45) and L. helveticus CP790 (44), respectively, the only
s1-casein hydrolysates identified so far for LAB. The cleavage sites detected for the CEP of L. delbrueckii subsp. lactis CRL 581 were different from those described for the CEP of L. helveticus (Fig. 5). The L. delbrueckii subsp. lactis CRL 581 CEP prefers a glutamine (Q) or glutamic acid (E) side chain on the residue whose carbonyl carbon is part of the peptide bond to be cleaved; approximately 35% of the released peptides from
s1-casein had Q or E at the C-terminal part of the molecule (Fig. 4A).
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FIG. 2. Time course of hydrolysis of s1-casein (A) and β-casein (B) by L. delbrueckii subsp. lactis CRL 581 after growth in MDM medium. Purified s1-casein and β-casein were added to washed-cell suspensions of L. delbrueckii subsp. lactis CRL 581, and samples were taken immediately after addition (0 h, lanes 1) and at 15 min (lanes 2), 30 min (lanes 3), 1 h (lanes 4), 2 h (lanes 5), and 4 h (lanes 6) of incubation at 40°C. Cells were removed by centrifugation, and the supernatants were analyzed by SDS-PAGE.
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FIG. 3. RP-HPLC profiles of the peptides from the 1%-TFA-soluble fraction obtained from the control (0 h, dotted line) and after 4 h (solid line) of hydrolysis of s1-casein (A) and β-casein (B) by the action of CEP from L. delbrueckii subsp. lactis CRL 581. AU, absorbance units.
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TABLE 4. Peptides identified in the s1- and β-casein hydrolysates produced by CEP activity of L.delbrueckii subsp. lactis CRL 581
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FIG. 4. Locations of the main peptides (double-ended arrows) identified in the primary sequences of s1-casein (A) and β-casein (B) and released by CEP from L. delbrueckii subsp. lactis CRL 581. Zs are phosphoserines. The phosphopeptides are indicated with dashed-line double-ended arrows.
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FIG. 5. Specificity of CEPs of LAB, including CEP from L. delbrueckii subsp. lactis CRL 581, toward the s1-casein fragment comprising residues 1 to 23. The cleavage sites are indicated by arrows.
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s1-casein (f1-23) fragment, used for determining the proteinase specificity in Lactococcus, was hydrolyzed at least at the Gln9-Gly10, Gln13-Glu14, Glu14-Val15, Glu18-Asn19, and Leu21-Arg22 bonds (Table 4 and Fig. 5). The lactococcal CEPs are classified in seven groups (from a to g) according to their specificities toward the
s1-casein fragment comprising residues 1 to 23 (5). Like CEP of L. delbrueckii subsp. lactis CRL 581, many CEPs of LAB are able to hydrolyze the Gln9-Gly10, Gln13-Glu14, and Leu21-Arg22 bonds (Fig. 5). To our knowledge, the Glu14-Val15 and Glu18-Asn19 cleavage sites are specific for L. delbrueckii subsp. lactis CRL 581 and have never been identified for any of the previously described CEPs of LAB (Fig. 5). Therefore, the specificity of the L. delbrueckii subsp. lactis CRL 581 CEP toward the
s1-casein (f1-23) fragment did not fit into the criteria for one of the groups distinguished so far among the lactococcal CEP variants (5), and the L. delbrueckii subsp. lactis CRL 581 CEP could be classified as a mixed-type CEPI/III variant (2). The β-casein hydrolysate contained 32 peptides of from 3 to 27 amino acids (325.20 to 3,018.59 Da), of which six were phosphopeptides: Leu16 to Gln39, Lys32 to Glu42, Lys32 to Asp43, Lys32 to Gln46, Lys32 to Phe52, and Lys32 to Gln56 (Table 4 and Fig. 4B). The identification of peptides produced during β-casein hydrolysis by lactobacilli has been described for L. delbrueckii subsp. lactis ACA-DC 178 and L. helveticus CNRZ 303 and CP790, for which 4, 6, and 15 peptides, respectively, were identified (43, 44, 45). Four bonds (Ser15-Leu16, Glu42-Asp43, Leu192-Tyr193, and Pro206-Ile207) were cleaved by both L. delbrueckii subsp. lactis CRL 581 and L. helveticus CP790, while three bonds (Met156-Phe157, Ser161-Val162, and Leu192-Tyr193) were cleaved by the CEPs of both L. delbrueckii subsp. lactis CRL 581 and ACA-DC 178. All the other cleavage sites observed in this study were different from those reported for other lactobacillus proteinases. In addition, unlike the proteinase of L. delbrueckii subsp. lactis ACA-DC 178, the CEP of L. delbrueckii subsp. lactis CRL 581 was able to hydrolyze the β-casein protein upstream of residue 144 (43). In contrast, more than 100 different peptides were identified in the hydrolysate of β-casein degraded by the proteinase of L. lactis (20). Four out of the 32 peptides described in the present study were also observed in the β-casein hydrolysate of L. lactis. These peptides were located at the C-terminal part of β-casein and included the Leu191-Leu192, Leu192-Tyr193, Tyr193-Gln194, and Leu198-Gly199 bonds. Moreover, the C-terminal end of β-casein, which contains the bitter peptide f193-209, is highly susceptible to breakdown by CEP of L. delbrueckii subsp. lactis CRL 581 at the Tyr193-Gln194, Gln194-Glu195, Pro196-Val197, Val197-Leu198, Leu198-Gly199, Pro203-Phe204, and Pro205-Ile206 bonds, as well as by the other previously described proteinases of LAB (17, 20, 23, 38, 40, 44, 45). In addition, the tripeptide Ile-Pro-Pro (f74-76) was identified in the β-casein hydrolysate generated by the CEP of L. delbrueckii subsp. lactis CRL 581 (Table 4 and Fig. 4B). This peptide inhibits angiotensin I-converting enzyme and has an antihypertensive effect (7, 12, 13, 19).
Thermophilic lactobacilli, including L. delbrueckii subsp. lactis, are involved in the production of hard cheeses, such as Italian- and Swiss-type cheeses. Nowadays, there is an increasing interest in the development of dairy health products. In this study, the pattern of
s1- and β-casein breakdown by CEP of L. delbrueckii subsp. lactis CRL 581 is described. In particular, two new cleavage sites on the
s1-casein (f1-23) fragment (Glu14-Val15 and Glu18-Asn19), which have not been previously described for other CEPs of LAB (see Fig. 5), were identified for the CEP of L. delbrueckii subsp. lactis CRL 581. These data will contribute to the available knowledge on lactobacillus CEPs, which is limited compared to the best-described lactococcus CEP enzymes. Furthermore, since L. delbrueckii subsp. lactis CRL 581 releases the antihypertensive peptide Ile-Pro-Pro, this microorganism could be used as a functional cheese starter for its technological and health properties.
Published ahead of print on 18 April 2008. ![]()
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