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Applied and Environmental Microbiology, July 2008, p. 4292-4299, Vol. 74, No. 14
0099-2240/08/$08.00+0 doi:10.1128/AEM.00264-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.


Cornell University, Department of Plant Pathology and Plant-Microbe Biology, 334 Plant Science Building, Ithaca, New York 14853
Received 30 January 2008/ Accepted 21 May 2008
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Germination of P. ultimum sporangia in the spermosphere is initiated by molecules released from seeds within the first 15 to 30 min after sowing (27). With cotton seeds, long-chain unsaturated fatty acids (LCUFA) found in seed exudates are able to elicit this rapid sporangial germination response (24). Rapid mycelial growth and seed colonization follow sporangial germination (27), resulting in embryo infection within 24 to 48 h (7, 15, 28). Both sporangial germination and seed colonization are critical stages in Pythium pathogenesis, and if either is eliminated, disease will not develop (8, 12).
Seed infections caused by P. ultimum are reduced when seeds are coated with the gram-negative bacterium Enterobacter cloacae (10, 26). The mechanism by which E. cloacae achieves such control is by preventing the initiation of sporangial germination in the spermosphere within 1 h of sowing (27), thereby suppressing subsequent disease development. However, not all plants are protected by E. cloacae. For example, E. cloacae is extremely effective in protecting seeds of plants such as cotton and cucumber but fails to protect seeds of plants such as pea and corn (10) because of its failure to block sporangial activation and germination (27). One possible explanation for this failure is that other exudate molecules are released into the spermosphere that regulate the degradation of LCUFA by E. cloacae.
Genes within the fad regulon of gram-negative bacteria are responsible for uptake and degradation of both long-chain saturated fatty acids (LCSFA) and LCUFA from the environment (6). Many of the fad genes are transcriptionally induced in the presence of exogenous FA (3, 4). However, because FA are considered less attractive sources of carbon for sustaining bacterial growth and metabolism, these genes are under additional transcriptional regulation by the cyclic AMP receptor protein. If glucose is present in the environment or if the extracellular osmolarity is high, fad genes are not transcribed despite the presence of LCSFA and LCUFA (9, 22).
Seed exudates contain a wide spectrum of compounds, including FA and sugars (16), each of which is known to regulate expression of bacterial fad genes (3). It is conceivable that exudate sugars serve as regulators of E. cloacae FA degradation in the spermosphere, explaining the differential activity of E. cloacae in corn and cucumber spermospheres. The qualitative and quantitative changes in FA and sugar exudation within the first few minutes of sowing, the most critical window for E. cloacae activity in the spermosphere (27), and the influence of exudate sugars on E. cloacae LCUFA degradation are unknown (16). Based on these observations, the current study was designed to test the following two hypotheses: (i) the rate of LCUFA release from corn seeds greatly exceeds the rate of degradation by E. cloacae, and alternatively, (ii) corn seeds release sugars at the same time as elicitor FA and at concentrations sufficient to repress E. cloacae LCUFA degradation.
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Production and germination of Pythium ultimum sporangia.
Pythium ultimum isolate P4 was routinely grown on a mineral salts medium (SM+L) amended with 0.1% soy lecithin (
-phosphatidylcholine; Sigma, United States). Previous work demonstrated that sporangia produced on this media mimic those produced on living plant tissue (19). Six-millimeter-diameter agar discs were cut from 5-day-old cultures incubated at 27°C. These discs were leached twice in darkness for 10 min each, followed by a 3-h leaching with a buffer [0.01 M Ca(NO3)2·4H2O, 0.04 M MgSO4·7H2O, 0.05 M KNO3, pH 5.8]. The leaching buffer was replaced with fresh buffer at the end of each leaching period. Discs were rinsed twice with sdw and incubated in the dark for 2 days at 24°C. Ten microliters of seed exudate dissolved in 10 mM potassium phosphate buffer (pH 6.0) at concentrations ranging from 0 to 20 µg/µl or cell-free E. cloacae-treated solutions was added to leached discs. Discs were incubated for 3 h at 24°C and stained with 0.03% acid fuchsin in 85% lactic acid, and the numbers of germinated and nongerminated sporangia were enumerated at x250 to x400 by making an optical section across the entire diameter length of each disc.
Growth and maintenance of E. cloacae.
E. cloacae strain EcCT501-R3 was grown on tryptic soy agar (Becton Dickinson, Cockeysville, MD) for 24 h. These cells were then used to inoculate 25 ml of tryptic soy broth (Becton Dickinson). Tryptic soy broth cultures were incubated for 18 h at 37°C on a rotary shaker at 130 rpm. Cells were collected by centrifugation (10 min at 5,000 rpm), the supernatant was discarded, and the pellet was washed twice with 0.1% sodium pyrophosphate buffer before being resuspended in M9 medium (14). Cell density was adjusted to 109 cells/ml by measuring the optical density at 600 nm.
Collection of seed exudate.
Seeds were selected and surface sterilized as described above. Three grams of seeds was added to 30 ml of sdw in 125-ml flasks, and seed exudate was collected by shaking the flasks at 150 rpm at 24°C for 0.25, 0.5, 1, 2, 4, and 6 h. Exudate was harvested by decanting the solution through sterile cheesecloth into 50-ml tubes. The antioxidant butylated hydroxytoluene (Sigma, United States) was added to each tube at a final concentration of 10 ppm. Ten 10-µl aliquots of the exudate solution were spotted onto plates of potato dextrose agar (Difco, United States) and tryptic soy agar and assessed for contamination after 48 h. Noncontaminated solutions were pooled, lyophilized, and stored frozen under an atmosphere of argon. Four replicate flasks were prepared for each treatment. The exudate collection was repeated three times.
Extraction, derivatization, and analysis of seed exudate FA.
Aqueous seed exudate solutions (30 ml) were spiked with 30 µg of tridecanoic acid as an internal control to assess extraction efficiency and acidified with sulfuric acid to a pH of
3.5 before extraction. FA were extracted using conditioned 500 mg Oasis HLB solid-phase extraction columns (Waters Corp., Massachusetts) and using a two-dimensional elution protocol with chloroform-methanol (2:1, vol/vol) and methanol according to the manufacturer's instructions. All solvents used were high-pressure liquid chromatography grade. Samples were evaporated and redissolved in 2 ml methanol with 1% sulfuric acid and spiked with 30 µg of nonadecanoic acid as an internal control to assess esterification efficiency. Samples were vortexed and incubated at 85°C for 50 min. After incubation, 1.2 ml sdw was added and then methyl esters were extracted twice with 2 ml hexane. The organic fraction was dried over anhydrous granular sodium sulfate, evaporated, and redissolved in methylene chloride. Samples were injected (1 to 2 µl) into an HP5890 (Hewlett-Packard) gas chromatograph (GC), equipped with a DB-225 column (20-m length, 0.18-mm inner diameter, 0.2-µm film thickness) and a flame ionization detector (FID). The injector and detector temperatures were 230°C. The oven starting temperature was set at 150°C and held for 1 min, followed by an increase of the temperature to 240°C at 4°C/min, and the high temperature was held for 10 min. Peak areas and retention times were integrated with an HP3393A integrator. Three replicates were analyzed for each treatment, and the experiment was repeated twice. Subsequently, samples from the same seed and time were pooled and 2-µl aliquots were injected into an HP6890 GC equipped with a Supelco Equity 5 column (30-m length, 0.25-mm inner diameter, 0.25-µm film thickness) and an Agilent HP5973 mass spectrometer (MS) detector. The same parameters used above were employed for the GC-MS analysis. Peak areas and retention times were integrated using Agilent ChemStation software. FA were identified on the basis of retention times and mass spectrograms compared to a standard mix and a library of mass spectrograms. Individual peaks were quantified by comparing peak areas with those of the internal standards.
Seed exudate sugar derivatization and analysis.
Seed exudate sugars were derivatized and analyzed as described by Roberts et al. (23). Briefly, 10- to 100-µl aliquots of 40-mg/ml exudate were lyophilized in 250-µl glass inserts placed in 2-ml autosampler vials. To each vial was added 25 to 50 µl N-methyl-bis(trifluoroacetamide) and 25 to 50 µl pyridine. Vials were capped with Teflon septa and heated at 65°C for 2 h with occasional vortexing. Two-microliter aliquots were injected into an HP5890 GC equipped with an Ultrawax 2 column (25-m length, 0.2-mm inner diameter, 0.33-µm film thickness) and a FID. The injector and detector temperatures were set to 250 and 300°C, respectively. The initial oven temperature of 75°C was held for 1 min, and the oven temperature was ramped at 10°C/min to a final temperature of 225°C and held for 2 min. Peak areas and retention times were integrated with an HP3393A integrator. Individual sugars were identified and quantified by comparing the retention time and peak areas to external standards. Standard curves were prepared using sugars that have been previously reported in seed exudates (16, 23). Increasing concentrations of each sugar were derivatized as described above, and 2-µl aliquots were used for GC analysis to determine retention times and peak areas. Regression equations were then calculated to establish relationships between absolute sugar levels and retention time. Three replicates were analyzed for each treatment, and the experiment was repeated twice.
Evaluation of LA degradation by E. cloacae.
M9 medium containing either 200 or 350 µg/ml of sodium linoleate (Sigma Chemical Co., St. Louis, MO) dissolved in 1% Brij (Acros Organics, New Jersey) was used to evaluate the degradation of linoleic acid (LA) by E. cloacae. For sugar assays, M9 medium containing 200 µg/ml of LA was used as a P. ultimum sporangial germination stimulant. Glucose, fructose, or sucrose was added to the M9 medium to achieve final concentrations of 0, 1, 2, 3, 4, 5, and 10 mM, which equate to totals of 0, 18, 36, 54, 72, 90, and 180 µg of glucose and fructose and 0, 36, 72, 108, 144, 180, and 360 µg of sucrose per 100 µl, respectively. Each well of a 96-well microtiter plate was inoculated with 50 µl of E. cloacae cell suspension (final concentration of 5 x 108 cells/ml) and 50 µl of treatment solution. Negative controls consisted of 10 mM test sugar (180 µg/100 µl for both glucose and fructose and 360 µg/100 µl for sucrose) without LA to preclude the possibility of sugars eliciting germination responses. Previous studies have demonstrated that P. ultimum sporangia produced as described above do not germinate in response to glucose, fructose, or sucrose alone (19, 20). Plates were incubated at 27°C, and each treatment had three replicates.
The contents of the wells were transferred to 2-ml tubes after various incubation times and centrifuged. Well contents were removed at 0, 2, 4, and 8 h for the glucose and fructose assays; at 0, 4, 8, and 10 h for the sucrose assays; and at 0, 2, 4, 6, 8, 10.5, 12, and 24 h for the LA degradation assay (no sugars added). Supernatants were transferred to new tubes, and butylated hydroxytoluene was added to a final concentration of 10 ppm to reduce oxidation. Supernatants were then frozen under an atmosphere of argon. Experiments were repeated at least twice.
LA quantification.
LA levels in samples from the glucose and sucrose assays were analyzed with GC. LA was extracted from sugar-amended M9 medium by using a liquid-liquid extraction procedure described by Folch et al. (5). A solution of chloroform and methanol (2:1, vol/vol) was added to the acidified samples (pH
3.5) in an equal volume. The sample was vortexed for 1 min, and the organic phase was collected in a 2-ml glass vial. The extraction was repeated, and the organic phases were combined. Samples were then dried under a stream of nitrogen and redissolved in hexane. An online derivatization method was used in which 2 µl of bis(trimethylsilyl)trifluoroacetamide and 1 µl of sample were coinjected into an HP5890 GC, equipped with an HP-255 column (25-m length, 0.2-mm diameter, 0.2-µm film thickness) and FID (21). The injector and detector temperatures were 230°C. Isothermal analyses (at 230°C) were conducted, and the total run time was 7 min. LA peak areas and retention times were integrated with an HP3393A integrator. Peak areas were quantified using an external LA standard. Three injections were made for each sample analyzed.
Statistical analysis.
Exudate yields, sporangial germination rates, and individual FA and sugar components were analyzed with analysis of variance using the PROC GLM procedure in SAS v9.1 (SAS Institute, Cary, NC). Probit analysis using Minitab v14.2 (Minitab Inc., Pennsylvania) was used for estimating the 50% effective concentration (EC50) values (exudate concentration that stimulates 50% sporangium germination). Means were separated using Student's t test, and least significant difference tests were used for pairwise comparisons. Additionally, simple linear regression was performed on time course studies (sugar and FA release, germination in response to E. cloacae-treated solutions, and FA degradation) followed by analysis of covariance for comparison of treatment slopes. The data from sugar assays (sporangium germination and remaining levels of LA) were analyzed by multiple regression (MR). First, a one-way analysis of variance was performed to ensure that the negative control was significantly different from all other treatments so that this treatment could be eliminated from the subsequent MR analysis. Germination data were transformed {arcsine [sqrt(p)] where p is the proportion of germinated sporangia} to stabilize the normality and variance when necessary. Diagnostic plots were performed for all the data to ensure that assumptions of the tests were fulfilled. Additionally, for MR analysis partial regression plots were analyzed to assess linearity between the response variable and each individual predictor variable, in the presence of all other variables. Insignificant terms (
> 0.05) were dropped in all tested models.
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FIG. 1. Corn (A) and cucumber (B) water uptake in glass beads ( [A] and [B]), sand ( ), and water ( ). Each marker represents the mean of at least six observations from at least two replicate experiments, and the error bars represent the standard deviations. Note the different y axes.
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TABLE 1. Exudate, FA, and sugars released by corn and cucumber during the first 6 h of seed imbibition and the stimulatory activity of exudates at each collection time toward Pythium ultimum sporangial germination
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Qualitative and quantitative analysis of FA in seed exudates.
Both corn and cucumber seeds released significant levels of FA within 15 min of initiating imbibition (Table 1). Although corn released four to seven times more FA than did cucumber over 6 h of germination, the release of FA by cucumber represented a greater proportion of the total exudate. Total FA (wt/wt) was equivalent to 0.11 to 0.32% of the total weight of corn seed exudate and 0.40 to 0.66% of the total weight of cucumber seed exudate (data not shown). Levels of FA did not increase significantly for either plant species beyond levels detected by 15 min.
The most abundant LCUFA detected in corn and cucumber seed exudate were oleic acid (C18:1) and LA (C18:2). By 15 min after sowing, corn seeds released 92 ng of C18:1 and 83 ng of C18:2 per seed (Fig. 2), which corresponds to a combined exudation rate of 11.6 ng/seed/min. Over the same 15-min period, cucumber exudate released 7 ng of C18:1 and 41 ng of C18:2 per seed, which equates to a combined exudation rate of 3.2 ng/seed/min. Within the first 6 h of imbibition, corn seeds had released 870 ng of C18:1 and 255 ng of C18:2 per seed. The release of these two FA from cucumber seeds fluctuated over time but did not increase significantly by 6 h. Trace amounts of myristoleic (C14:1) and palmitoleic (C16:1) acid were also detected inconsistently in cucumber seed exudate after 4 h of sowing at amounts of <3 ng/seed (data not shown).
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FIG. 2. Oleic acid (A) and LA (B) released from germinating corn () and cucumber ( ) seeds during the first 6 h after sowing. Each marker represents the mean of six observations.
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FIG. 3. Saturated FA (palmitic acid [ ], stearic acid [ ], and others []) released from germinating corn (A) and cucumber (B) seeds during the first 6 h after sowing. Other saturated FA include caprylic (8:0), capric (10:0), lauric (12:0), myristic (14:0), and behenic (22:0) acids. Each marker represents the mean of six observations.
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Glucose, fructose, and sucrose were the most abundant sugars detected in corn and cucumber seed exudates at all collection times. Other sugars detected at low levels in both corn and cucumber seed exudate included arabinose, cellobiose, galactose, lactose, maltose, mannitol, rhamnose, ribose, trehalose, and xylose. In addition, mannose and lactose were detected in cucumber exudate. The combined levels of glucose, fructose, and sucrose accounted for 71 to 83% and 37 to 60% of all the exudate sugars from corn and cucumber, respectively. Glucose was the most abundant sugar detected in corn exudate, accounting for 31 to 46% of all sugars released and comprising nearly 10% of the total dry weight of exudate released within 15 min of starting imbibition (Table 1). By 30 min of imbibition, 60.1 µg of glucose and a combined total of 137 µg of fructose, glucose, and sucrose was released by individual corn seeds (Table 2; Fig. 4A). Fructose was the most abundant sugar detected in cucumber seed exudate and comprised between 24 and 37% of all exudate sugars. Most of the fructose (0.780 µg/seed) was released from cucumber seeds within the first 30 min of imbibition, making up the bulk of the combined 0.827 µg of fructose, glucose, and sucrose released at that time point (Table 2; Fig. 4B).
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TABLE 2. Release rates of long-chain FA and glucose, fructose, and sucrose from corn and cucumber seeds within the first 30 min of germination
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FIG. 4. Glucose ( ), fructose ( ), sucrose (), and other sugars ( ) released by germinating corn (A) and cucumber (B) seeds during the first 6 h after sowing. Other sugars include arabinose, cellobiose, galactose, lactose, maltose, mannitol, mannose, raffinose, rhamnose, ribose, trehalose, and xylose for corn. The same sugars except lactose and mannose are included in the same category for cucumber. Each marker represents the mean of six observations. Note the different y axes.
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Germination response of P. ultimum sporangia to LA exposed to E. cloacae.
The degradation and sporangial stimulation of LA in the presence of E. cloacae were studied over a 24-h period (Fig. 5). Lower percentages of LA-induced germinated sporangia were observed in the presence than in the absence of E. cloacae. Significant reductions in sporangial germination were observed by 4 h of incubation in the presence of 200 µg/ml LA, and by 12 h, only 7% sporangial germination remained. By 24 h of incubation, the level of remaining LA elicited less than 4% sporangial germination. As measured by sporangial germination levels, LA degradation rates were estimated to range from 23.8 to 25.8 ng/min.
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FIG. 5. Germination of P. ultimum sporangia in response to cell-free LA solutions that have been treated with E. cloacae. E. cloacae cells were incubated in 200-µg/ml () or 350-µg/ml ( ) solutions of LA for 24 h. Cells were then removed, and the supernatant was assayed. Each marker represents the mean of three observations ± standard deviation.
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FIG. 6. Germination of P. ultimum sporangia in response to cell-free LA solutions amended with different concentrations of glucose (A), fructose (B), or sucrose (C) that have been treated with E. cloacae for 0 (), 4 ( ), or 10 ( ) h. Each marker represents the mean of three observations ± standard deviation.
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TABLE 3. Rate of LA degradation by E. cloacae in the presence of glucose or sucrose
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In the presence of glucose, E. cloacae degradation of LA after 4 h of incubation displayed a pattern similar to that in the presence of fructose (Fig. 6A). Significantly lower levels of sporangial germination were observed when no sugar was added to LA solutions than in the presence of 90 or 180 µg/ml glucose. Remaining levels of LA in these treatments resulted in sporangial germination rates of 79% and 88%, respectively.
In the presence of sucrose, however, the degradation of LA by E. cloacae resulted in a slightly different response (Fig. 6C). E. cloacae required a 10-h incubation period with sucrose before a pattern similar to that described above for glucose and fructose could be observed. There was significantly less sporangial germination induced by LA in the absence of sucrose after 10 h of incubation than with treatments containing 72 to 360 µg of sucrose. With all of the sugars tested, 72 to 180 µg was sufficient to significantly reduce the degradation of LA as measured by P. ultimum sporangial germination.
Levels of LA in the presence of glucose and sucrose were quantified after various periods of incubation with E. cloacae (Fig. 7). Degradation of LA by E. cloacae was reduced even at very low concentrations of each tested sugar. As glucose or sucrose concentrations increased, there was a significant (P < 0.0001) corresponding linear increase in the levels of LA remaining in samples, despite the presence of E, cloacae. Based on GC analyses of LA solutions incubated in the presence of E. cloacae (8 to 10 h) but in the absence of sugars, the rates of LA degradation by E. cloacae were between 29.2 and 39.2 ng LA/min (Table 3). Ninety micrograms of glucose and 180 µg of sucrose were the minimum amounts that significantly decreased the rate of LA degradation, and the presence of glucose and sucrose at 180 and 360 µg, respectively, reduced the rate of LA degradation to 8.8 and 7.5 ng/min, respectively.
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FIG. 7. Levels of remaining LAs (as measured by GC with a FID) in solutions amended with 0 (), 18 ( ), 90 ( ), or 180 ( ) µg glucose/100 µl (A) or 0 (), 36 ( ), or 180 ( ) µg sucrose/100 µl (B) that have been incubated with E. cloacae for various periods of time. Each bar represents the mean of three observations ± standard deviation.
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Critical to the tests of these hypotheses is the characterization of FA and sugars released into the spermosphere within the first 30 to 60 min of sowing. If E. cloacae is to compete with P. ultimum sporangia for LCUFA, such competition must occur during this time frame since E. cloacae does not inhibit sporangial germination and disease development once sporangial activation has taken place (27). The results of our study reveal that, within this critical time frame, the rate of degradation of exudate FA by E. cloacae exceeds the rate at which they are released from seeds by nearly fourfold. Therefore, the first hypothesis can be rejected.
Previous studies have shown that many different sugars are released from seeds during germination (16). Roberts et al. (23) found that glucose, sucrose, and fructose were the most abundant sugars found in the seed exudates of cucumber and corn as well as other plant species within the first 96 h of seed germination. However, the concentrations within the first 30 to 60 min of germination were not determined. If sugar repression of E. cloacae FA degradation explains the failure of E. cloacae to reduce sporangial germination and subsequent disease development, then sufficient concentrations of sugars must be released during this critical time frame. Furthermore, the sugars must be those capable of repressing FA degradation. Our results confirm that detectable concentrations of glucose, sucrose, fructose, and other sugars are present during these early stages of seed germination for both cucumber and corn seeds. Although concentrations of sugars released from corn seeds exceeded those necessary to reduce FA degradation by E. cloacae, sugar concentrations in cucumber seed exudates were over 100 times lower than those required to reduce FA degradation. It is likely, therefore, that the lack of FA degradation by E. cloacae in corn seed exudates can explain the observed reduction in disease development, since the addition of glucose or fructose to cucumber and other low-sugar-exudation seeds is known to abolish the protection of seeds by E. cloacae against P. ultimum infection (18).
It is important to note that rates of exudation of FA and sugars as well as the rates of FA degradation were determined in a liquid matrix where seeds may display a different exudation rate than they would in a solid matrix. Although the rates of water imbibition (and hence exudation rate) did not differ among the three exudate collection systems used (glass beads, sand, and water), differences were observed in the total amount of water imbibed. Seeds imbibed more water when placed in free water; the lowest amount of water was taken up in glass beads. Since increased water uptake is accompanied by increased exudation during these initial stages of seed germination (16), it is possible that estimated rates of LCUFA and sugar release from corn and cucumber seeds are slightly inflated. Overestimation of exudate release would affect primarily the calculated values for cucumber seeds because they imbibed up to 38% more water when germinated in free water than when germinated in a solid matrix. However, for corn the total amount of water imbibed differed significantly between the solid and liquid matrices only after 2 h of sowing. Ultimately, this overestimation does not affect the overall conclusion that the rates of LCUFA degradation by E. cloacae either equal or exceed the rate of LCUFA release from seeds and that sugars released by corn seeds are sufficient to decrease LCUFA degradation.
Results from studies of root exudation dynamics also suggest that exudation rates may be underestimated under gnotobiotic conditions (11, 13), in part because the soil microbiota are known to increase not only the total level of exudation but also the composition of specific exudate components. Currently, no data are available on the effects of the soil microbiota on seed exudation. Considering that the initial release of exudates from seeds is a passive process (1), the lack of microorganisms during exudate collections would not be expected to have a significant impact on seed exudation dynamics because of the limited (60-min) experimental time frame.
Results from this study have validated the important role of FA competition in the spermosphere as an essential mechanism by which plant-associated bacteria interact with seed-infecting oomycete pathogens of plants. A key conceptual element to emerge from this study is the importance of understanding the synchronization of developmental behaviors and activities of plant-associated microbes with specific spermosphere molecules that regulate those behaviors in understanding the nature of plant-associated microbial interactions. This is particularly critical in plant-associated habitats such as the spermosphere where the biochemical and microbial environment changes rapidly. Such synchronization provides a critical ecological context in which meaningful hypotheses can be tested. Continued studies of spermosphere habitats are likely to reveal important new insights into the nature of plant-associated microbial interactions.
Many thanks to Anthony Hay, Department of Microbiology, Cornell University, for his help with the GC-MS analysis.
Published ahead of print on 30 May 2008. ![]()
Present address: Michigan State University, Department of Plant Pathology, 140 Plant Biology Building, East Lansing, MI 48824. ![]()
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