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Applied and Environmental Microbiology, August 2008, p. 4847-4852, Vol. 74, No. 15
0099-2240/08/$08.00+0 doi:10.1128/AEM.00555-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.
Conversion of Daidzein and Genistein by an Anaerobic Bacterium Newly Isolated from the Mouse Intestine
Anastasia Matthies,1,
Thomas Clavel,2,
Michael Gütschow,3
Wolfram Engst,4
Dirk Haller,2
Michael Blaut,1 and
Annett Braune1*
Department of Gastrointestinal Microbiology,1
Analytics Group, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, D-14558 Nuthetal, Germany,4
Chair for Biofunctionality, Nutrition and Food Research Centre, Technical University of Munich, Am Forum 5, D-85354 Freising, Germany,2
Pharmaceutical Institute, Pharmaceutical Chemistry I, University of Bonn, An der Immenburg 4, D-53121 Bonn, Germany3
Received 7 March 2008/
Accepted 27 May 2008

ABSTRACT
The metabolism of isoflavones by gut bacteria plays a key role
in the availability and bioactivation of these compounds in
the intestine. Daidzein and genistein are the most common dietary
soy isoflavones. While daidzein conversion yielding equol has
been known for some time, the corresponding formation of 5-hydroxy-equol
from genistein has not been reported previously. We isolated
a strictly anaerobic bacterium (Mt1B8) from the mouse intestine
which converted daidzein via dihydrodaidzein to equol as well
as genistein via dihydrogenistein to 5-hydroxy-equol. Strain
Mt1B8 was a gram-positive, rod-shaped bacterium identified as
a member of the
Coriobacteriaceae. Strain Mt1B8 also transformed
dihydrodaidzein and dihydrogenistein to equol and 5-hydroxy-equol,
respectively. The conversion of daidzein, genistein, dihydrodaidzein,
and dihydrogenistein in the stationary growth phase depended
on preincubation with the corresponding isoflavonoid, indicating
enzyme induction. Moreover, dihydrogenistein was transformed
even more rapidly in the stationary phase when strain Mt1B8
was grown on either genistein or daidzein. Growing the cells
on daidzein also enabled conversion of genistein. This suggests
that the same enzymes are involved in the conversion of the
two isoflavones.

INTRODUCTION
Isoflavones have been implicated in the prevention of hormone-dependent
and age-related diseases, including cancer, osteoporosis, menopausal
symptoms, and cardiovascular diseases (
6,
21,
38,
46). Moreover,
owing to their ability to induce hormonal and metabolic changes,
isoflavones might favorably influence obesity and type 2 diabetes
(
43). Based on their structural similarity to endogenous estrogens,
isoflavones may bind to estrogen receptors and display agonistic
or antagonistic effects (
24). Besides hormone-dependent effects,
isoflavones show hormone-independent activities, including antioxidative
and antiproliferative properties and enzyme inhibition (
18,
25,
41). A rich dietary source of isoflavones is soy products
containing predominantly daidzin and genistin or the corresponding
aglycones, daidzein and genistein (
20).
Biotransformation is an important factor in regulating the biological activity of dietary isoflavones. The metabolites formed may have effects that differ from those of the parent compound. Gut bacteria play a crucial role in the metabolism of isoflavones, as has been demonstrated previously for daidzein. Metabolites of bacterial daidzein transformation are dihydrodaidzein, O-desmethylangolensin, and equol (10, 35). In addition, tetrahydrodaidzein has been detected in human urine (26). In vitro studies suggest that O-desmethylangolensin and equol are more biologically active than their precursor, daidzein (e.g., they bind to estrogen receptors with greater affinity) (3). In humans, there are substantial interindividual variations in the metabolism of daidzein. Approximately 30 to 50% of humans are capable of producing considerable amounts of equol from ingested daidzein, which has been explained by differences in the composition of the gut microbiota (8, 12, 34, 36). The interindividual variability in equol formation appears to be unique to humans. The microbiotas of animals, including rats and mice, uniformly produce equol from daidzein (1, 5, 7, 27, 53). So far, only a few bacterial strains involved in equol formation have been described, and some of these strains catalyze only single reaction steps (23, 29, 31, 45, 49, 52, 54).
Gut microbiota and isolated bacterial strains transform genistein to dihydrogenistein, 6'-hydroxy-O-desmethylangolensin, and 2-(4-hydroxyphenyl)propionic acid (10, 15, 23, 39, 51, 52). Although dihydrogenistein formation from genistein corresponds to dihydrodaidzein formation from daidzein, further conversion yielding 5-hydroxy-equol, the metabolite analogous to equol, has not been observed previously.
Here, we demonstrate the conversion of daidzein and genistein to equol and 5-hydroxy-equol, respectively, by a strictly anaerobic bacterium newly isolated from the mouse intestine.

MATERIALS AND METHODS
Chemicals.
Daidzein and 2-(4-hydroxyphenyl)propionic acid were purchased
from Acros Organics (Geel, Belgium). Dihydrodaidzein was obtained
from Toronto Research Chemicals (Toronto, Canada), and equol
was obtained from Fluka (Deisenhofen, Germany). Genistein was
purchased from Roth (Karlsruhe, Germany). Dihydrogenistein,
6'-hydroxy-
O-desmethylangolensin, and
O-desmethylangolensin
were prepared by using previously described methods (
47,
48).
Isolation procedure.
Strain Mt1B8 was isolated from the ileum of a 12-week-old female TNF
ARE C57BL/6 mouse (28) in the course of experiments aiming at identification of bacteria associated with inflamed mucosa. Animal use was approved by the Bavarian Animal Care and Use Committee (approval no. 55.2-1-54-2531-74-06). The ileal sample was prepared as described previously (17). Strain Mt1B8 was isolated on Mt1 agar after incubation of an undiluted ileal cell suspension (100 µl) at 37°C for 9 days under anaerobic conditions in sealed jars using AnaeroGen sachets (Oxoid). The composition of Mt1 agar (pH 7.7) was 5 g/liter mucin (catalog no. M1778; Sigma), 500 mg/liter cysteine, 1 mg/liter yeast extract, 20 µg/liter folic acid, 20 µg/liter vitamin B12, 50 mM NaHCO3, 10 mM CH3COONa, 5 mM Na2HPO4, 5 mM NaCl, 3 mM KH2PO4, 1 mM CaCl2, 1 mM MgCl2, 10 µM FeCl3, and 1% (wt/vol) agar. Strain purity was ensured as described previously (14). Strain Mt1B8 was a strictly anaerobic, gram-positive, rod-shaped bacterium that grew as single cells, as determined by microscopic observation after Gram staining and by the KOH test (22). An analysis of a partial sequence (1,338 bp) of the 16S rRNA gene of strain Mt1B8 was performed as described previously (13), and the results showed that strain Mt1B8 is a member of the family Coriobacteriaceae. Since three equol-forming bacteria isolated from rat and human intestines (29, 30, 49) also belong to the Coriobacteriaceae, we focused on the conversion of isoflavones by strain Mt1B8.
Bacterial growth.
Strain Mt1B8 was routinely kept and grown under strictly anoxic conditions in brain heart infusion (BHI) broth (Roth, Karlsruhe, Germany) in Hungate tubes with butyl rubber stoppers and screw caps. The BHI broth was supplemented with 0.5 g/liter cysteine hydrochloride (Merck, Darmstadt, Germany). The 16-ml tubes containing 10 ml medium and an H2-CO2 (80:20, vol/vol) gas phase were inoculated with 100 µl of an overnight culture and incubated at 37°C. Bacterial growth was monitored turbidometrically by determining the optical density at 600 nm (OD600). The anoxic techniques used have been described elsewhere (9).
Conversion experiments.
For the conversion experiments, the isoflavonoids were dissolved in dimethyl sulfoxide (20 mM stock solutions) and sterile filtered (Millex-GV filter; Millipore, Billerica, MA). To tubes containing 10 ml BHI broth, 50 µl (daidzein, genistein, dihydrogenistein) or 32 µl (dihydrodaidzein) of a stock solution was added by using a syringe. The tubes were inoculated with 200 µl of an overnight culture (ca. 2.8 x 106 cells) of strain Mt1B8 and incubated at 37°C. As controls, isoflavonoids and bacteria were incubated separately in medium. Samples were taken at different times with a syringe and centrifuged at 14,000 x g for 5 min. The supernatants (20 µl) were directly used for high-performance liquid chromatography (HPLC) analysis.
For the induction experiments, strain Mt1B8 was grown in BHI broth supplemented with daidzein, genistein, dihydrodaidzein, or dihydrogenistein at a final concentration of 100 µM. In parallel, cultures were grown in the absence of isoflavonoids. Following incubation for 14 h, the same isoflavonoid or another isoflavonoid was added to the same cultures at a final concentration of 100 µM. The tubes were incubated at 37°C for another 26 h. Samples were taken every 2 h for use in HPLC analysis, determination of the OD600, and protein measurement. Following disruption of cells by heating them in 0.44 M NaOH, the protein concentration was determined by the bicinchoninic acid method (BCA-1 kit; Sigma, Deisenhofen, Germany) with bovine serum albumin as the standard.
HPLC analysis.
Isoflavones and their aromatic metabolites were separated using an HPLC system (Gynkotek, Munich, Germany) equipped with a model 480 pump, an ERC-5515 degasser, a GINA 50 autosampler, an STH 585 column oven, a UVD 320S diode array detector, and a reversed-phase C18 column (LiChrospher 100 RP-18; 5 µm; 250 by 4 mm; Merck, Darmstadt, Germany). The column temperature was kept at 37°C. The mobile phase was a gradient of water-acetic acid (98/2, vol/vol) (solvent A) and methanol (solvent B) (5 to 55% solvent B in 15 min, 55% solvent B for 10 min, 55 to 100% solvent B in 3 min, and 100% solvent B for 4 min) at a flow rate of 0.8 ml/min. Detection was at 280 nm. The compounds were identified on the basis of their retention times and UV spectra (200 to 355 nm) in comparison with those of standard reference compounds. Calibration curves were used for quantification. For control of the HPLC system and data processing, the Chromeleon software (version 6.40; Dionex, Sunnyvale, CA) was used.
UPLC-ESI-MS analysis.
For further characterization by ultraperformance liquid chromatography (UPLC)-coupled mass spectrometry (MS), the final product of genistein metabolism by strain Mt1B8 was isolated by HPLC from the fermentation supernatant. Fractions containing the genistein product were collected manually and used for UPLC-MS analysis. The UPLC system (Acquity Ultra Performance LC; Waters, Milford, MA) consisted of a solvent manager, a sample manager, and a diode array detector and was connected to a triple quadrupole mass spectrometer with a Z-spray API electrospray ionization (ESI) source (Quattro Premier XE; Waters, Milford, MA). The column was a UPLC BEH C18 column (1.7 µm; 50 by 2.1 mm; Waters, Milford, MA). The column temperature was maintained at 25°C. The mobile phase was a gradient of water-formic acid (95/5, vol/vol; pH 2.0) (solvent A) and methanol (solvent B) (0 to 40% solvent B in 3.10 min, 40% solvent B for 0.40 min, and 40 to 100% solvent B in 1.50 min) at a flow rate of 0.35 ml/min. A 4-µl aliquot of a sample was injected. MS-MS analyses were carried out in positive ionization mode using a capillary voltage of 0.7 kV, a source block temperature of 100°C, and a desolvation temperature of 450°C. The collision gas was argon at a pressure of 3.1 x 10–1 Pa. The cone voltage was 25 V, and the collision energy was 13 eV. Data were analyzed using the MassLynx software (version 4.1; Waters, Milford, MA).
SPE.
For nuclear magnetic resonance (NMR) analysis, the final product of genistein metabolism by strain Mt1B8 was isolated from approximately 50 ml of the fermentation supernatant (initial concentration of genistein, 100 µM) by solid-phase extraction (SPE). An octadecyl (C18) column (3 ml; 500 mg; Bakerbond, Phillipsburg, NJ) was conditioned three times with 2 ml of methanol and three times with 2 ml of water. After this, 2 ml of the fermentation supernatant was loaded onto the column, and this was followed by two washes with 2 ml of 3.7 mM aqueous HCl and one wash with 2 ml of 40% (vol/vol) aqueous methanol. The column was dried at room temperature for 10 min. The genistein metabolite was eluted with 2 ml of 60% (vol/vol) aqueous methanol. The eluates were pooled, dried by vacuum centrifugation (RC 10.22; Jouan, Saint-Nazaire, France), and dissolved in water.
NMR analysis.
The final product of genistein conversion by strain Mt1B8 was isolated from the fermentation supernatant by SPE as described above. For further purification, 100-µl samples were separated using the HPLC system described above. The fractions containing the genistein metabolite were manually collected, pooled, and dried by vacuum centrifugation. 1H NMR spectra (500 MHz) and 13C NMR spectra (125 MHz) were recorded in dimethyl sulfoxide-d6 using a Bruker Avance 500 instrument. For 1H NMR of 5-hydroxy-equol:
= 2.69-2.74 (m, 1H, 4-H), 4.06-4.09 (m, 1H, 2-H), 4.32-4.35 (m, 1H, 2-H), 5.69, 5.88 (each d, J = 2.2 Hz, 2H, 6-H, 8-H), 6.70 (d, J = 8.5 Hz, 2H, 3'-H, 5'-H), 7.08 (d, J = 8.5 Hz, 2H, 2'-H, 6'-H); signals for two aliphatic protons (4-H, 3-H) were not assigned. For 13C NMR of 5-hydroxy-equol:
= 70.10 (C-2), 94.17, 95.18 (C-6, C-8), 115.35 (C-3', C-5'), 128.37 (C-2', C-6'), 155.44, 156.19, 156.24, 156.44 (C-4', C-5, C-7, C-8a); signals for four carbons (C-3, C-4, C-4a, C-1') were not assigned.
Nucleotide sequence accession number.
The 16S rRNA gene sequence of strain Mt1B8 has been deposited in the EMBL nucleotide sequence database under accession number AM747811.

RESULTS AND DISCUSSION
Daidzein conversion by strain Mt1B8.
Growing cells of strain Mt1B8 completely transformed ca. 100
µM daidzein in 10 h (Fig.
1). The conversion of daidzein
started concurrently with growth of the culture, and the maximal
rate was reached after 6 to 10 h during the exponential growth
phase. From daidzein, a nearly equimolar concentration of equol
(70 µM) was obtained as the final product within 18 h.
In the course of daidzein conversion, one intermediate was observed,
which was identified as dihydrodaidzein. The maximal concentration
of dihydrodaidzein (48 µM) was detected after 10 h of
incubation (Fig.
1). When directly used as a substrate, dihydrodaidzein
(ca. 65 µM) was also transformed by growing cells of strain
Mt1B8 to equol (50 µM) within 12 h (data not shown).
So far, only a few bacteria have been reported to catalyze the
complete conversion of daidzein to equol.
Asaccharobacter celatus and
Adlercreutzia equolifaciens, which are phylogenetically
related to strain Mt1B8, also form dihydrodaidzein as an intermediate
and were isolated from rat cecal contents and human feces, respectively
(
29,
30). Two other strains,
Eubacterium sp. strains D1 and
D2, were isolated from feces of pigs (
54). All other species
isolated so far apparently catalyze only certain steps in the
conversion of daidzein to equol.
Clostridium sp. strain HGH6
and
Clostridium-like strain TM-40 from human feces and
Lactobacillus sp. strain Niu-O16 from the bovine rumen convert daidzein to
dihydrodaidzein (
23,
45,
52).
Eggerthella sp. strain Julong
732, which was isolated from human feces, transforms dihydrodaidzein
to equol (
49). By combining
Lactobacillus sp. strain Niu-O16
and
Eggerthella sp. strain Julong 732, formation of equol from
daidzein has been demonstrated (
50). For humans, complete conversion
of daidzein to equol was observed when a partially defined mixed
culture isolated from feces (
19) or complex fecal microbiota
(
35,
42,
44) was used. Alternatively, daidzein may be transformed
to
O-desmethylangolensin by cleavage of the C ring, as catalyzed
by the human intestinal species
Eubacterium ramulus (
39,
51).
Genistein conversion by strain Mt1B8.
Genistein (ca. 100 µM) was completely transformed to dihydrogenistein by growing cells of strain Mt1B8 within 14 h (Fig. 2). The conversion of genistein started with a delay after growth of the culture, and the maximal rate was reached between 10 and 14 h during the exponential growth phase. Dihydrogenistein was converted further within 25 h, and one final product was formed. Although the cell densities were higher in the fermentation experiment with genistein, the transformation of this isoflavone started with a delay (Fig. 2) compared to the transformation of daidzein by strain Mt1B8 (Fig. 1). Moreover, the end product of genistein conversion appeared late, leading to accumulation of the intermediate dihydrogenistein (Fig. 2). In contrast, equol was observed immediately after daidzein conversion started, and the amount of dihydrodaidzein formed was smaller than the amount of dihydrogenistein (Fig. 1). Remarkably, incubation of dihydrogenistein (ca. 100 µM) with growing cells of strain Mt1B8 led to only a slight decrease in the dihydrogenistein concentration (18 µM within 40 h) (data not shown). However, the same metabolite which was observed as the end product of genistein transformation was also formed from dihydrogenistein, but at a much lower level (0.008 milli-absorption units x min).
The elution behavior during HPLC analysis and the UV spectrum
of the genistein product (absorption maxima at 232 and 280 nm)
did not correspond to the elution behavior and UV spectrum of
the previously reported microbial genistein metabolites, 6'-hydroxy-
O-desmethylangolensin,
2-(4-hydroxyphenyl)propionic acid, 4-ethylphenol, and 1,3,5-trihydroxybenzene
(
4,
10,
15,
16,
23,
39,
40,
51,
52). Further characterization
of the metabolite by UPLC-ESI-MS analysis resulted in a protonated
molecule at
m/z 259 [M+H]
+, indicating a hydroxylated form of
equol (Fig.
3A). The product ion spectrum for
m/z 259 revealed
a major fragment at
m/z 139 and additional peaks at
m/z 165,
153, 133, 121, and 107 (Fig.
3A). For comparison, the daidzein
metabolite, equol, was analyzed in parallel by MS. From the
molecule ion peak at
m/z 243, fragments at
m/z 149, 137, 133,
123, 121, and 107 were formed (Fig.
3B). As previously observed
for the molecular peaks of the genistein metabolite and equol,
a mass difference of 16 was also evident for the peaks at
m/z 165 (equol,
m/z 149),
m/z 153 (equol,
m/z 137), and
m/z 139
(equol,
m/z 123). Thus, these fragments most likely represent
A-ring derivatives, whereas
m/z 133, 121, and 107, which are
present in both spectra, originate from the B ring (Fig.
3A and B).
Standard reference compounds of hydroxylated equol derivatives
were not available to confirm the proposed structure of 5-hydroxy-equol.
Therefore, the metabolite was isolated from the supernatant
of genistein fermentation by strain Mt1B8 using SPE, purified
by analytical HPLC, and subjected to
1H and
13C NMR analysis.
Although only a small quantity of the compound could be obtained,
the NMR data confirmed that it was 5-hydroxy-equol (see Materials
and Methods).
Whereas dihydrogenistein is the end product of genistein conversion
by
Lactobacillus sp. strain Niu-O16 (
52), the C-ring cleavage
yielding 6'-hydroxy-
O-desmethylangolensin and subsequently 2-(4-hydroxyphenyl)propionic
acid is catalyzed by
Eubacterium ramulus (
39,
51). Although
proposed to be a metabolite of microbial genistein conversion
(
2,
11), so far, 5-hydroxy-equol has been detected neither in
vitro nor in vivo as a product of the human or rat intestinal
microbiota. This suggests that strain Mt1B8 is not common in
humans and rats but is specific to mice. However, the metabolism
of genistein has not been studied in mice to date. On the other
hand, 5-hydroxy-equol may have escaped detection because a standard
reference compound is not commercially available. Different
hydroxyl-substituted equol derivatives are products of phase
I metabolism of equol by host enzymes (
37). Interestingly, 5-hydroxy-equol
was reported to show an antioxidant activity superior to that
of genistein (
2). As shown for other isoflavonoids, including
daidzein, genistein, and equol, 5-hydroxy-equol is also expected
to bind to estrogen receptors, preferably to estrogen receptor
β (
32,
33,
42).
Induction of isoflavonoid conversion.
During growth of strain Mt1B8, daidzein, genistein, dihydrodaidzein, and dihydrogenistein were converted to the end products equol and 5-hydroxy-equol. When the isoflavonoids were added after 14 h of growth (i.e., at the beginning of the stationary phase), the ability of strain Mt1B8 to transform these compounds was greatly reduced (Table 1). During 25 h of incubation with daidzein and genistein only very small amounts of dihydrodaidzein and dihydrogenistein, respectively, were formed. No metabolites were observed when dihydrodaidzein or dihydrogenistein was incubated with strain Mt1B8 under these conditions. When cells were grown in the presence of daidzein, genistein, dihydrodaidzein, and dihydrogenistein, the second dose of these compounds added after 14 h of incubation was rapidly converted to the same metabolites that were observed with growing cells. The conversion rates for cultures grown in the presence of the isoflavonoids were up to 54-fold higher than those for cultures not preincubated with these compounds (Table 1). Thus, the expression of encoding genes does not appear to be constitutive but is inducible by the substrates of the enzymes involved. To date, there have been no other reports of the induction of enzymes responsible for the transformation of (iso)flavonoids by gut bacteria. The isoflavonoids did not appear to affect cell growth, since the cell densities were similar whether isoflavonoids were present or absent (data not shown). The time courses of daidzein and genistein transformation and metabolite generation in the stationary phase were similar for cells preincubated with these isoflavones. The delay in the conversion of genistein and the formation of 5-hydroxy-equol observed with growing cells were not observed. However, as observed for growing cultures, the rate of conversion of dihydrogenistein in the stationary phase for cells grown in the presence of this isoflavonoid was lower than the rates of conversion of the other isoflavonoids (Table 1).
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TABLE 1. Initial conversion rates (0 to 2 h) for isoflavonoid substrates added to cultures of strain Mt1B8 during the stationary growth phasea
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In addition, the effect of preincubation with isoflavonoids
other than those added in the stationary phase was tested. The
presence of daidzein during cell growth enabled conversion not
only of daidzein but also of genistein during the stationary
phase at similar rates (Table
1). This suggests that identical
enzymes catalyze the conversion of the two isoflavones. Furthermore,
the transformation of dihydrogenistein was also induced by preincubation
with either genistein or daidzein. Remarkably, the resulting
conversion rates were even higher than those observed following
induction by dihydrogenistein (Table
1). This suggests that
dihydrogenistein conversion is more efficiently induced when
this compound (or dihydrodaidzein) is formed inside the cell.
In summary, strain Mt1B8 converts daidzein and genistein to the analogous metabolites, equol and 5-hydroxy-equol, via the same pathway (Fig. 4). Thus, besides the intensively studied equol formation, intestinal bacteria might also contribute to bioactivation of genistein by converting it to 5-hydroxy-equol.

ACKNOWLEDGMENTS
This work was supported by the Deutsche Forschungsgemeinschaft
(grant BR 2269/3-1).
We are indebted to Jeanett Haeger for technical assistance. We thank Frank Lehmann (Pharmaceutical Institute, University of Bonn, Bonn, Germany) for synthesis of standard reference compounds and George Kollias (Institute of Immunology, Biomedical Sciences Research Center Alexander Flemming, Vari, Greece) for providing the TNF
ARE C57BL/6 mice.

FOOTNOTES
* Corresponding author. Mailing address: Department of Gastrointestinal Microbiology, German Institute of Human Nutrition Potsdam-Rehbruecke, Arthur-Scheunert-Allee 114-116, D-14558 Nuthetal, Germany. Phone: 49-33200-88402. Fax: 49-33200-88407. E-mail:
braune{at}dife.de 
Published ahead of print on 6 June 2008. 
A.M. and T.C. contributed equally to this work. 

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Applied and Environmental Microbiology, August 2008, p. 4847-4852, Vol. 74, No. 15
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