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Applied and Environmental Microbiology, September 2008, p. 5414-5421, Vol. 74, No. 17
0099-2240/08/$08.00+0 doi:10.1128/AEM.00854-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Enteric and Food Microbiology Laboratory, International Centre for Diarrhoeal Disease Research, Bangladesh, GPO Box 128, Dhaka-1000, Bangladesh,1 Food and Consumer Product Safety Authority, P.O. Box 202, 7200 AE Zutphen, The Netherlands,2 Laboratory of Food Microbiology, Wageningen University, 6700 EV Wageningen, The Netherlands3
Received 15 April 2008/ Accepted 7 July 2008
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STEC are defined by the production of one or more types of Shiga toxin (Stx1 or Stx2 or their variants), which inhibit the protein synthesis of host cells, leading to cell death. Stx1 and Stx2 are encoded by alleles in the genome of temperate, lambdoid bacteriophages that are integrated in the E. coli chromosome (38). Besides the stx gene(s), human pathogenic STEC strains often carry the eae gene, encoding the adherence factor intimin, which is an outer membrane protein (32). The eae gene is carried by a pathogenicity island in the chromosome called the locus of enterocyte effacement (LEE), which is required for intimate attachment to the host intestinal mucosa (32). Furthermore, human pathogenic STEC strains often harbor a large plasmid encoding possible additional virulence traits such as the enterohemorrhagic E. coli (EHEC) hemolysin (hlyEHEC) gene, which acts as a pore-forming cytolysin on eukaryotic cells (36); the bifunctional catalase peroxidase (katP) gene (7); a secreted serine protease (espP) gene, which can cleave human coagulation factor V (8); and the etpD gene cluster, which probably encodes a type II secretion pathway (37). With more LEE-negative STEC strains being reported, investigations of adhesins encoded outside of the LEE have been carried out (40). Several proteins were proposed to be novel adhesion factors; these include ToxB (a protein identified from the large, 93-kb plasmid pO157 and required for full expression of adherence of O157:H7 strain Sakai), Saa (an autoagglutinating adhesin identified in the LEE-negative strains), Iha (an adherence-conferring protein similar to the Vibrio cholerae IrgA protein), Efa1 (an EHEC factor for adherence), and LPF (the long polar fimbriae protein, closely related to LPF of Salmonella enterica serovar Typhimurium) (40).
Domestic ruminants, mainly cattle, sheep, and goats, have been established as major natural reservoirs for STEC and play a significant role in the epidemiology of human infections (16). During the processing of the carcasses, fecal contamination or transfer of bacteria from the animal's hide to the carcass can facilitate transmission of pathogenic E. coli to the meat (15).
In most of the developing and underdeveloped countries, hygienic conditions are severely compromised, and living with domestic animals within the same premises is a common practice in both rural and urban areas. Although the socioeconomic status and living style of the people in developing countries support the prevalence of STEC infection, surprisingly, until recently, only a few studies have been done in this part of the world. Human infections associated with STEC strains have been described in Latin America, India, and other developing countries (24, 26). In Bangladesh, the predominant group of E. coli associated with childhood diarrhea is enterotoxigenic E. coli, accounting for approximately 20% of all diarrheal cases (34). Recently, we determined the prevalence of STEC and the organisms' characteristics among hospitalized diarrheal patients and children with diarrhea in the urban slum community of Dhaka, Bangladesh. The prevalence of STEC was 0.5% among the hospitalized patients, which was 1.9% of the cases of community patients. No STEC strain O157 organisms were isolated in the study (23). This result is comparable with data from other developing countries. The low prevalence of STEC in diarrheal patients can be explained by different facts, the first of which is the absence of any potential reservoir for this organism. Limited studies of the ecology of STEC have been reported, particularly from developing countries. In Bangladesh, no study of the occurrence of STEC in animals had been done. Therefore, the primary objective of the present study was to determine the prevalence of STEC in feces collected from buffalo, cows, and goats slaughtered for meat production.
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5 cm), 1 to 1.5 cm away from the rectum, was excised aseptically and kept at 4 to 8°C. The samples were transported immediately to the laboratory, where the microbiological examination was started within 8 h.
Isolation of STEC O157.
From each sample, a 25-g portion of feces was collected from a piece of intestine (
5 cm), which was aseptically excised from the animal immediately after slaughter and added to 225 ml of modified tryptone soy broth (Oxoid). After samples were homogenized in a stomacher for 1 min, they were incubated for 18 to 20 h at 37°C. STEC O157 was isolated as described previously (22), by using the immunomagnetic separation technique, and presumptive isolates were confirmed by an agglutination test using an E. coli O157 latex agglutination kit (Murex Biotech Ltd., Dartford, Kent, United Kingdom) and a PCR for the rfb (O-antigen-encoding) region of E. coli O157 (rfbEO157) (32).
Isolation of STEC non-O157 strains.
The overnight enrichment cultures were screened by PCR for the presence of the stx1 and stx2 genes. DNA was extracted from 1 ml of broth culture by thermal cell lysis, using Chelex-100 resin (Bio-Rad Laboratories Ltd., Richmond, CA), and 5 µl of the DNA extract was used in the PCR. Multiplex PCR for stx1 and stx2 was carried out in a PTC-200 Peltier thermal cycler (Bio-Rad) as described previously (23). Broth cultures that yielded positive PCR results for stx1 and/or stx2 were streaked onto tryptone bile x-glucuronide (TBX) agar (Oxoid) supplemented with cefixime (20 µg/liter), cefsulodin (3 mg/liter), and vancomycin (30 mg/liter) (CCV-TBX). STEC colonies were identified by a colony patch technique, described previously (23).
Serotyping.
All isolates were sent to the National Institute of Public Health and the Environment (RIVM) in Bilthoven, The Netherlands, for O and H typing.
Phage typing.
Isolates confirmed to be STEC O157 were phage typed at the laboratory of Enteric Pathogens, Central Public Health Laboratory, London, United Kingdom.
PCR detection of putative virulence and adhesin genes.
Isolates were tested for both chromosomally carried (e.g., stx1, stx2, and eae) and plasmid-encoded (e.g., hlyEHEC, katP, and etpD) virulence genes by PCR according to the procedure described previously (23). The presence of eight putative adhesin genes in STEC non-O157 strains (iha, toxB, saa, efa1, lpfAO113, lpfAO157/OI-141, and lpfAO157/OI-154) was determined by using the primer sets and reaction conditions described by Toma et al. (40).
Pulsed-field gel electrophoresis.
All STEC O157 and STEC non-O157 isolates that belonged to the same serotype were selected to be analyzed by pulsed-field gel electrophoresis (PFGE). PFGE was performed following the standardized protocol developed by PulseNet for E. coli O157:H7 (35). Analysis of the tagged image file format (TIFF) images was carried out with BioNumerics software (Applied Maths, Belgium) using the dice coefficient and unweighted-pair group method using average linkages to generate dendrograms with 1.0% tolerance values.
Statistical methods.
The chi-square test with Yates' correction or, if necessary, Fisher's exact test was used as indicated to compare the test results. Statistical testing was performed using Epi Info version 3.3.2 on a standard personal computer. Statistically, P values of <0.05 were considered significant for comparisons.
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Characterization of STEC O157.
The results of the PCR assays for different virulence genes are presented in Table 1. Among 45 STEC O157 isolates, seven phage types (PT) were identified. Ten isolates from buffalo could not be characterized by any recognized PT, 5 of which were identified as untypeable, and the remaining were reacts but not confirmed. Digestion of genomic DNA from the 45 isolates with XbaI and analysis by contour-clamped homogeneous electric field (CHEF)-PFGE revealed 37 distinct restriction profiles (Fig. 1).
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TABLE 1. Virulence and (putative) adhesin gene typing of STEC O157 and non-O157 isolates from fecal samples of slaughter animals
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FIG. 1. Dendrogram generated by BioNumerics software, showing the distance calculated by the dice similarity index of PFGE XbaI profiles for 45 STEC O157 isolates isolated from fecal samples of slaughter animals. The degree of similarity (%) is shown on the scale.
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Serotyping of the STEC non-O157 isolates revealed that the isolates belonged to 36 different O groups (grouping isolates with an untypeable O serogroup, as serogroup ONT) and 52 O:H serotypes (Table 2). Isolates of different serotypes were found in the same sample; at the same time, isolates of the same serotype were found in different samples of the same/different origins (Table 2). Isolates belonging to the same serotype isolated from same/different samples were analyzed by PFGE, which showed a clonal relationship among different isolates of the same serotype (results not shown). However, polymorphism was also observed between isolates of the same serotype. Three isolates of serotype O80:H19 and two isolates of serotype O125:H19 isolated from both cow and buffalo feces showed identical PFGE patterns. Likewise, three isolates of serotype O149:H8 and two isolates of serotype O141:H21 isolated from buffalo feces generated identical patterns.
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TABLE 2. Characteristics of STEC non-O157 isolates from fecal samples of slaughter animals in Bangladesh
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When buffalo samples were tested for the presence of stx genes by PCR, around 80% of the samples were positive. Of the cows and goats, around 73% and 12%, respectively, were positive. STEC non-O157 strains could be isolated from 23.6%, 12.9%, and 0.9% of the buffalo, cow, and goat samples, respectively. Failure to isolate the STEC non-O157 strains from PCR-positive fecal samples is a common problem (3). In India, viable STEC were recovered from 24 to 40% of PCR-positive samples, depending on the origin of the sample. The nonisolation of viable STEC from PCR-positive samples might be due to the presence of very low numbers of bacteria, the presence of free stx phage in the sample, and the loss of stx genes upon subcultivation of strains (23). Under routine diagnostic conditions, there is no definitive biochemical characteristic, like sorbitol fermentation in the case of serogroup O157, which can identify STEC irrespective of the serotypes from commensal flora.
Most of the STEC O157 isolates (91.1%) were positive for the stx2 gene only. In humans, epidemiologic data suggest that E. coli O157 strains that express Stx2 are more important than Stx1 in the development of HUS (17) and that strains that express Stx2 alone are more likely to be associated with the progression to HUS than strains that produce both Stx1 and Stx2 (16). When the presence of other virulence genes was analyzed, most of the strains were found to be positive for the eae (95.5%), hlyEHEC (93.3%), katP (93.3%), and etpD (93.3%) genes (Table 1). Thus, STEC O157 isolates in this study were found to be carrying additional virulence factors, clearly associated with increased human pathogenicity. In our previous study of patients in Bangladesh, we found the prevalence of STEC in diarrheal patients was relatively low compared to that of other enteric pathogens, including V. cholerae and Shigella spp. (23). STEC O157 was not found in any of the patients. The higher prevalence of STEC in cattle, in tandem with a low isolation rate in diarrheal patients in Bangladesh, can be explained by the presence of the high prevalence of antibodies in the population, which prevent infection and/or clinical manifestations of STEC infection. However, further studies are needed to establish this explanation.
At least 90 PT have been reported for STEC O157 (25), but only 7 of these (PT2, PT4, PT8, PT14, PT21/28, PT32, and PT54) account for the majority (>75%) of the human strains isolated in Europe and Canada (30). More than 77% (n = 35) of the STEC O157 isolates in this study were characterized by seven recognized PT. PT14 (24.4%), -31 (24.4%), and -32 (8.9%) were commonly found in all three types of animals, with differences in prevalence. Other PT that were found in this study were PT8 for goat isolates and PT34, PT38, and PT54 for buffalo isolates. PT14 has commonly been found among STEC O157 strains from different sources, including cattle feces, meat, and human patients (25). Furthermore, a significant association has been detected between PT14 and the presence of acute pathologies (30). PT8 is one of the PT most frequently found among STEC O157:H7 strains from humans and bovines in many European countries, including Spain, Belgium, Finland, Germany, Italy, England, and Scotland (25). PT34 and PT54 have also been found among strains from both human and animal origin but appeared to be more frequent among strains from animal origins (30). PT32 was detected in STEC O157 strains associated with several large outbreaks, including a multistate outbreak in the United States (6) and a recent one in Ireland (29). PT31 was found in both human and non-human sources (meat and slaughter houses) in Canada, suggesting a food-borne transmission in human cases (25).
A high degree of polymorphism was observed for STEC O157 isolates analyzed by PFGE. A total of 37 distinct profiles were obtained among 45 isolates. Strains which had identical PFGE patterns belonged to the same type of animal (Fig. 1). No PFGE profiles were found to be commonly generated by isolates from different types of animals (Fig. 1).
STEC non-O157 isolates have been shown to be important pathogens, despite being severely underreported, because in many laboratories, the facilities to isolate, identify, and characterize them do not exist. Where facilities do exist, STEC non-O157 isolates are found (1). In the present study, we have characterized 71 STEC non-O157 isolates. These isolates belonged to 36 O serogroups and 52 O:H serotypes (Table 2), of which 32 were isolated from buffalo only, 14 from cow only, 1 from goat only, and 5 from both cow and buffalo. All non-O157 serotypes in the study were compared with the serotypes isolated in previous studies from different sources. The majority of STEC isolates belonged to serotypes (42.3%; n = 22) previously found among STEC of human origin, of which 31.8% (n = 7) were of serotypes associated with severe infections, including bloody diarrhea and HUS (Table 2). In addition, 17 serotypes found in this study were found previously among STEC strains isolated from multiple origins, including those of human patients, cattle, and milk/meat (Table 2). Interestingly, 18 serotypes in this study could not be matched with the recognized STEC serotypes reported so far (Table 2).
When virulence genes were analyzed, 78.9% of the isolates were found to be positive for stx1 only, 12.7% were positive for stx2 only, and 8.4% were positive for both stx1 and stx2. Higher prevalence rates of stx1 have been reported in strains from animal origin in previous studies (42), which corroborates the results of the present study. Only 7% of the isolates were found to be positive for the hlyEHEC gene (Table 1), and no isolates were positive for other virulence genes, including eae, katP, and etpD. STEC strains, which are positive for eae that is harbored by the large pathogenicity island LEE are considered to be highly virulent in humans (40). The LEE appears to confer enhanced virulence; however, the presence of the LEE is not essential for pathogenesis, since a number of cases of severe STEC disease, including HUS, as well as occasional outbreaks, were caused by the LEE-negative strains (31). It has been suggested that additional virulence factors, including adhesins encoded outside of the LEE, may play a role in STEC pathogenesis (40). Since all non-O157 isolates in this study were negative for eae, the isolates were tested for the presence of several novel adhesin genes. About 30% (n = 15) of the buffalo and 47% (n = 10) of the cow isolates were positive for the lpfO113 gene (Table 1). This is in accordance with a previous study where lpfO113 was found to be one of the most prevalent adhesin genes among STEC non-O157 strains (40). More than 8% (n = 4) of the buffalo and 19% (n = 4) of the cow isolates possessed the saa gene. In the study previously referred to, it was shown that there is a correlation between the presence of saa and hlyEHEC for certain serotypes (40). In the present study, similar results were found; among eight isolates positive for saa, five (62.5%) were positive for hlyEHEC.
Although a high degree of serotypic diversity was found among STEC non-O157 isolates in this study, isolates of the same serotype were found in different samples from different animal types. In addition, more than one isolate belonging to the same serotype with different virulence profiles was isolated from the same sample. PFGE analysis was applied to find out if there was any genetic relationship among isolates of the same serotype. Identical PFGE patterns were found among isolates belonging to the same serotype but isolated from different samples, and at the same time, different PFGE patterns were found in the case of some serotypes.
In our previous study, we found a low prevalence of STEC in diarrheal patients in Bangladesh, with no cases of STEC O157 infection (23). In this study, we found a significantly higher prevalence of both STEC O157 and non-O157 serotypes in the animal population. Therefore, there must be a limiting factor existing in the transmission route of this pathogen from the reservoir to the human population or there might be natural protection against STEC infection among the general population in Bangladesh. Further studies are being carried out to confirm these assumptions.
ICDDR,B acknowledges with gratitude the commitment of The Netherlands Foundation for the Advancement of Tropical Research (NWO-WOTRO) to the Centre's research efforts. ICDDR,B also gratefully acknowledges those donors who provide unrestricted support to the Centre's research efforts: the Australian International Development Agency (AusAID), Government of Bangladesh, Canadian International Development Agency (CIDA), the Kingdom of Saudi Arabia (KSA), Government of The Netherlands, Government of Sri Lanka, Swedish International Development Cooperative Agency (SIDA), Swiss Development Cooperation (SDC), and Department for International Development, United Kingdom (DFID).
Published ahead of print on 18 July 2008. ![]()
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). J. Clin. Microbiol. 42:645-651.
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