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Applied and Environmental Microbiology, November 2008, p. 7016-7022, Vol. 74, No. 22
0099-2240/08/$08.00+0 doi:10.1128/AEM.01020-08
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Microbiology, Soochow University, Taipei, Taiwan 111, Republic of China
Received 6 May 2008/ Accepted 16 September 2008
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Bacteria cope with stress by altering their spatial organization, including their morphology, subcellular architecture, and localization of macromolecules. The morphological transitions of bacteria are important to fitness and survival. The mechanisms that are used by rod-shaped bacteria to defend themselves against stresses, when activated, typically cause the generation of small spherical cells (28). Cells generally change from bacillus to coccoid form in response to starvation. They reshape back into the bacillus form with apparent polarity when they regain nutrients. Since MreB is associated with the morphogenesis of bacteria, it may have an important role in the morphological change of bacterial cells in response to intrinsic or extrinsic stresses. However, the response of cytoskeletons in bacteria to stress has not been thoroughly examined (19, 24, 26).
Aging and changes in spatial organization have been observed in several Vibrio spp. under stress (16, 37). Vibrio parahaemolyticus is a food-borne enteropathogenic pathogen that naturally inhabits marine and estuarine environments. V. parahaemolyticus can enter into a viable but nonculturable (VBNC) state with an accompanying drastic change in morphology (39). Strikingly, V. parahaemolyticus contains all three of the homologs of eukaryotic cytoskeletal proteins—MreB, FtsZ, and CreS—and we have investigated the dynamic behavior of MreB in this pathogen using the fluorescent protein-MreB conjugate (6). This work studies the expression and localization of MreB in V. parahaemolyticus in stationary phase and under several environmental stresses. MreB formed a dynamic cytoskeleton in V. parahaemolyticus, which underwent dramatic remodeling during stresses.
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Stress conditions.
V. parahaemolyticus was grown in TSB-3% NaCl at 37°C for 3 h (mid-exponential phase), 12 h (early stationary phase), or 36 h (prolonged stationary phase). Other stresses were imposed on the cultures in the mid-exponential phase. For carbon starvation, the cells were cultured in modified Morita mineral salt (MMS) medium (39) supplemented with 0.4% glucose at 25°C, harvested by centrifugation at 12,000 x g for 5 min, and washed twice with equal volumes of MMS medium without glucose (39). The cells were resuspended in an equal volume of MMS medium that was devoid of glucose and incubated at 25°C for different intervals. For cold shock, V. parahaemolyticus cells in the mid-exponential phase were cooled to 10°C and incubated for different intervals. The VBNC state was induced by incubating at 4°C in MMS medium as previously described (39). Culture samples were taken for microscopic and mRNA analyses.
IPTG (isopropyl-β-D-thiogalactopyranoside) was used at a final concentration of 10 µM to induce the expression of YFP-MreB in V. parahaemolyticus. For pulse induction, the cells were grown in TSB-3% NaCl in the presence of IPTG for 1 to 1.5 h. IPTG was removed before the application of stresses. For constant induction, IPTG was reintroduced into the MMS-washed cultures.
Microscopy and image analysis.
FM4-64 (Molecular Probes, Carlsbad, CA) was added to the sample at a final concentration of 1 µg/ml and incubated at 25°C in the dark for 10 min for membrane staining (27). To examine the integrity of the membrane, the cells were incubated with propidium iodide (Molecular Probes) at a final concentration of 30 µM at 25°C in the dark for 20 min. The cells were immobilized on agarose pads or poly-L-lysine-coated slides (Sigma Co., St. Louis, MO) before microscopic examination. Agarose pads were made by adding 1.5% of low-melt agarose to the TSB-3% NaCl, LB, or MMS medium. Antibiotics or IPTG were added to the culture medium when needed. Three microliters of the sample was placed on top of the agarose pads or coated slides.
The cells were examined with a Nikon Eclipse E800 fluorescence microscope equipped with a Nikon Plan Fluor 100 x 1.30 N.A. oil-immersion objective at room temperature (6). Images were obtained using an Evolution VF charge-coupled device camera (Media Cybernetics, Inc., Silver Spring, MD) and Image-Pro Express software (Media Cybernetics, Inc.). Five to seven images of optical sections of fluorescence images were obtained for a cell at spacings of about 140 nm.
RNA preparation and RT-PCR analysis.
The expression of mreB was determined by reverse transcription (RT)-PCR (19). Approximately 106 cells were taken from each sample to extract RNA using an RNApure kit (Genesis Biotech, Inc., Taipei, Taiwan), according to the manufacturer's instructions. RNA samples were treated with DNase I (Takara Bio, Inc., Shiga, Japan) and then reverse-transcribed using a ReverAid first-strand cDNA synthesis kit (Fermenta, Burlington, Harrington Court, Canada), as described by the manufacturer. For PCR analysis, two pairs of primers were used to amplify the cDNA of 16S rRNA (internal control; 16S rRNA-1385F, 5'-GTTATCTGAACCTTCGGGGA, and 16S rRNA-1385R, 5'-GTATTCACCGTGGCATTCTG) and mreB (mreBF, 5'-GGGTCGTACACCTGGTAACATT, and mreBR, 5'-GAACTTCATCACCTGGGTAAGC) in the multiplex PCR. The RT-PCR products were separated by agarose gel electrophoresis, stained with ethidium bromide, and quantified using ImageMaster total lab software (GE Healthcare, Piscataway, NJ).
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In exponential phase, the cells were under rapid growth, and newborn, elongated, and dividing cells were frequently observed (Fig. 1A, left). Fluorescence microscopy revealed that most cells in this phase contained MreB helical structures that extended along the long axis, and two newborn cells (Fig. 1Bi) and an elongated cell (Fig. 1Bii) were shown. Detail patterns of MreB structures in the exponential-phase V. parahaemolyticus were reported in another paper (6).
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FIG. 1. Localization of YFP-MreB in exponential- and stationary-phase cells of V. parahaemolyticus. Strain SC9 cells were grown at 37°C in the presence of 10 µM IPTG. (A) SC9 cells in mid-exponential phase (left) and early stationary phase (right) stained with FM4-64 and examined under a fluorescence microscope; (B) localization of YFP-MreB in exponential-phase cells, two newborn cells with helical filaments (i) and an elongated cell with a helical filament (ii); (C and D) localization of YFP-MreB in early stationary-phase cells or in prolonged stationary-phase cells, respectively. Scale bars represent 0.5 µm.
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Localization of YFP-MreB in starved V. parahaemolyticus cells.
Starvation altered the morphology of V. parahaemolyticus cells. The cells of V. parahaemolyticus strain SC9 grown in TSB medium exhibited cell lengths of 3.31 ± 0.33 µm in the exponential phase. The lengths of cells that underwent carbon starvation for 5 h decreased to 1.20 ± 0.08 µm, while the cell widths remained constant. The cell lengths further decreased to 0.68 ± 0.05 µm after 20 h of starvation. The expression of YFP-MreB was induced in two modes, constant induction or pulse induction. However, no apparent difference was observed between the localization patterns of YFP-MreB in these different modes. Most cells (78%) that were starved for 20 h exhibited a peripheral localization of YFP-MreB (Fig. 2A). Some cells (17%) contained loose MreB filaments that crossed the cytoplasm or were attached to the cytoplasmic membrane (Fig. 2B). However, the MreB filaments that crossed the cytoplasm may also have been located underneath the cell membrane but could not be distinguished by the microscopy adopted herein. YFP-MreB also diffused throughout the cytoplasm in 5% of the cells (Fig. 2C).
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FIG. 2. Localization of YFP-MreB in carbon-starved V. parahaemolyticus cells. Strain SC9 cells were grown in TSB-3% NaCl at 37°C until the early exponential phase and subjected to carbon starvation for 20 h. (A) Cells with peripheral YFP-MreB localization; (B) cells with loose YFP-MreB filaments that crossed the cytoplasm or attached to the cytoplasmic membrane; (C) cell with diffused YFP-MreB distribution in the cytoplasm. Scale bars represent 0.5 µm.
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FIG. 3. Localization of YFP-MreB in cold-shocked V. parahaemolyticus cells. Strain SC9 cells were grown in TSB-3% NaCl with 10 µM IPTG at 37°C until they entered the mid-exponential phase and cooled to 10°C for 1 h (A) or 4 h (B). Scale bar represents 0.5 µm.
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FIG. 4. Localization of YFP-MreB in VBNC V. parahaemolyticus cells. Strain SC9 mid-exponential phase cells were harvested, and the production of YFP-MreB was pulse induced with 10 µM IPTG before being induced to enter the VBNC state (39). (A) Swelling and waning process that occurred during the early differentiation of VBNC cells. Schematic illustrations and corresponding phase-contrast images are provided. The cell envelope and cytoplasm are represented in red and blue, respectively. (B, C, D, and E) Localization of YFP-MreB in swollen, waning, VBNC, and resuscitated cells, respectively. Phase-contrast and fluorescence images are provided. Panel C presents images of FM4-64 staining (ii) and FM4-64 plus YFP (iii). Scale bars represent 0.5 µm.
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Analysis of mreB expression in stressed V. parahaemolyticus cells.
To further clarify the function and the regulation of MreB in cells under various stresses, the expression kinetics of mreB were examined by RT-PCR. RNA was extracted from wild-type V. parahaemolyticus strain 1137 cells in different growth phases or under various environmental stresses. The mreB level was downregulated during transition from the exponential phase into the stationary phase and remained almost constant throughout the late stationary phase (Fig. 5A). Consistent with this fact, the level of mreB transcripts declines when B. subtilis (22) and Helicobacter pylori (33) cells enter the stationary phase. mbl expression is also downregulated in stationary-phase B. subtilis cells (1).
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FIG. 5. Analysis of mreB expression in wild-type V. parahaemolyticus strain 1137 under various stresses by RT-PCR. (A) Bacteria were grown in TSB-3% NaCl at 37°C for 3 h (mid-exponential phase), 12 h (early stationary phase), or 36 h (prolonged stationary phase); (B) bacteria were starved in MMS medium for 0, 18, or 24 h and then moved to MMS-0.4% glucose medium for 0.5, 1, 1.5, or 2 h, time points which are designated with the letter R; (C) bacteria at mid-exponential phase were cold shocked at 10°C for 2, 3, or 6 h, time points which are designated with the letter S, and compared to those control groups cultured at 37°C for an additional 0, 2, 3, or 6 h; (D) bacteria were maintained at 4°C in starving medium for 18, 24, or 72 h and then shifted to 25°C for the next 24 or 48 h, time points which are designated with the letter R (39). Numbers at the top of each lane indicate the treatment time in hours. M represents the molecular mass markers (100-bp DNA marker ladders; New England BioLabs, Ipswich, MA), with 500 bp at the bottoms of the images. The upper bands in each image are the 16S rRNA amplicons (1,385 bp) used as the reference, and the lower bands are the mreB amplicons (506 bp).
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The mreB level was upregulated in the first 18 h of the induction of the VBNC state and declined with fluctuation in the first 72 h, and the resuscitation by temperature-upshift treatment for 2 days did not enhance the mreB level (Fig. 5D). This level of the transcript can be explained by the combination of the early induction and an increased stability of mreB mRNA in cells during the early stage of VBNC state differentiation. The swelling process (Fig. 4A) occurred simultaneously with the increase in the level of mreB transcripts in this early stage. This coincidence reveals that the increase in the mreB level may be associated with the swelling process of the VBNC state. Asakura et al. adopted a microarray to compare the transcription pattern of stationary-phase and VBNC Vibrio cholerae cells and found that mreB is upregulated in VBNC cells (2).
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Soufo and Graumann indicated that starvation destroys MreB helices in B. subtilis cells in the exponential phase in only a few minutes (32). In B. subtilis cells in the stationary phase, green fluorescent protein-MreB localized as bright foci that are randomly located within the cells (32). These large foci may represent the aggregation of MreB. YFP-MreB foci were also observed in cold-shocked V. parahaemolyticus (Fig. 3). The YFP-MreB foci in V. parahaemolyticus were smaller than those found in stationary-phase B. subtilis cells and, unlike them, localized peripherally; they probably also exhibited a strong tendency to attach to the cytoplasmic membrane (Fig. 3).
An intriguing observation in our study is that MreB has a great propensity for membrane attachment. The disintegrated MreB cytoskeleton, whether in the form of loose filament, short arc, spot, or oligomer/monomer, principally localized beneath the cytoplasmic membrane. Although sequence analysis predicts that MreB is probably a cytoplasmic protein, several pieces of evidence show that MreB is associated with the membrane of the cell. Subcellular fractionation reveals that MreB is primarily associated with the membrane in Escherichia coli (36), Caulobacter crescentus (14), and Streptomyces coelicolor (24). This binding may proceed via the direct interaction of MreB with the membrane or indirectly via other membrane proteins. Two long-considered candidate proteins are MreC and MreD (20).
How do different environmental stresses influence the MreB cytoskeleton? Alterations of membrane composition in bacteria under stress may also account for the redistribution of MreB. Subtle changes in the lipid composition of the cell membrane under different environmental and physicochemical factors alter lipid-protein interactions (10). As demonstrated in another cytoskeleton, an oscillating MinD helix disintegrates into compact spots which randomly migrate around the mutant cells without phosphatidylethanolamine, an anionic phospholipid in the cell membrane (25).
Both stationary phase and carbon starvation represent composite stresses in bacterial cells, which then experience two major intrinsic difficulties, the deprivation of energy (especially ATP and adenylate energy charge) and oxidative damage. The ATP level declines as bacteria enter the stationary phase or are under starvation conditions (18), and the change of ATP level influences the dynamics of the MreB filaments. The actin cytoskeletal network of the budding yeast Saccharomyces cerevisiae becomes disorganized and shifts toward less-dynamic, ADP-actin-rich aggregates following ATP depletion in the stationary phase (15). ATP depletion may produce ADP-MreB-rich aggregates as in bacteria. In prokaryotic cells, MreB requires a bound purine nucleotide for polymerization and rapidly hydrolyzes it following assembly; moderate differences between the ATP and ADP critical concentrations influence the treadmilling of MreB (4).
In eukaryotic cells, oxidative stress also severely disrupts the actin cytoskeleton, mainly by oxidative modification of the sulfhydryl group of the conserved Cys374 residue of actin (8). The formation of the intramolecular Cys285-Cys374 disulfide bond or intermolecular disulfide linkages reduces the disassembly rate of actin filaments (8). The sequences of MreB homologs were examined herein, and four cysteine residues (Cys113, Cys116, Cys278, and Cys324) were identified in the MreB of V. parahaemolyticus. Cys113 is conserved in all prokaryotic MreB homologs (MreB, Mbl, and MreBH). Cys116 is only present in vibrios. Cys278 is conserved in MreB of gammaproteobacteria and MreBH. Cys324 is also highly conserved except for the MreB of Thermotoga maritima (34). A comparison with the structure of MreB revealed that the Cys116 and Cys278 residues of the MreB homolog of V. parahaemolyticus are probably assessable under oxidation. Stress usually causes intrinsic oxidation, which injures or kills the bacteria (7). Therefore, oxidation can mediate the change in the configuration of the MreB cytoskeleton in bacteria under stress.
As well as being a victim of stress, MreB may also play an active role in morphological differentiation in bacteria under stress. MreB participates in spatially coordinating cell morphogenesis in conjunction with MreC, a protein that wraps around the outside of the cell and becomes physically associated with penicillin-binding proteins. MreC is required for the spatial organization of components of the peptidoglycan-synthesizing holoenzyme, while MreB directs the localization of a peptidoglycan precursor synthesis protein (11). Microarray analysis reveals that MreBCD and Mbl in B. subtilis are upregulated in the "K-state," which is a growth-arrested and genetically competent state that is distinct from sporulation and probably a unique adaptation to stress (5). The similar stress-resistant state is also observed in other nonsporulating bacteria such as E. coli and V. parahaemolyticus. Cells typically become small and rounded during the differentiation of this state (35). It is believed that VBNC cells become small cocci in a manner similar to that of starved or stationary-phase cells (28). However, carefully examining the early course of the differentiation process revealed a heretofore undiscovered swelling-waning process. Cells swelled and became irregular before being miniaturized (Fig. 4). Concomitant changes in the expression and localization of MreB in V. parahaemolyticus reported here may constitute a mechanism by which the cells can develop an adaptive morphology. Some bacterial species, at least under certain circumstances, also differentiate into swollen dormant cells. B. subtilis cells change from rod-shaped to spherically or irregularly shaped cells under particular microculturing conditions (31), resembling the V. parahaemolyticus cells in the early stage of VBNC state differentiation, including bulges at the poles (Fig. 4).
MreB is upregulated in the shape-changed cells of B. subtilis (31). The relevant literature was thoroughly reviewed and original data from various transcriptomic and proteomic studies compiled. In summary, the production of MreB homologs is downregulated by Fur in the stationary phase or in the stringent response of bacteria, while such factors as acid stress, chromate exposure, heat shock, nitrogen limitation, osmotic stress, salinity shock, sporulation, the VBNC state, c-diGMP,
54 (RpoN),
E, the FlhD/FlhC transcriptional regulatory complex, YvcQ-YvcP (two-component regulatory systems), ComK (associated with the "K-state"), and others upregulate the production of MreB homologs. In this work, the expression of mreB was downregulated in stationary-phase and starved V. parahaemolyticus cells but upregulated in the initial periods of differentiation of cold-shocked and VBNC-state cells (Fig. 5). The upregulation of mreB expression or the enhanced production of MreB in bacteria under environmental stresses or stringent physiological states is probably limited to the initial periods of the responses. The level of mreB transcript was increased only in the first few days of VBNC-state differentiation (Fig. 5D), as in the formation of transient morphological abnormality and intensive reconfiguration of the MreB cytoskeleton (Fig. 4). Following this initial period, the cells became spheroid and the mreB level was downregulated, remaining low throughout the VBNC state. The amounts of mreB transcripts in V. parahaemolyticus strain 1137 were also determined under starvation and VBNC state at different intervals by quantitative real-time RT-PCR (3), and similar patterns were observed (unpublished data).
What other functions does the MreB cytoskeleton have in cells under stress? In S. cerevisiae, the depolarization of the actin cytoskeleton activates cell-wall-integrity signaling pathways (21). The integrity of the MreB cytoskeleton per se, and its associations with other molecules, may be used by the cell to monitor its physiological state and cellular functions. Moreover, a bacterial cell must coordinate the dynamics of the MreB cytoskeleton with ATP availability for homeostasis during stresses. The hypothetic ADP-MreB-rich aggregates may slow down the dynamics of the MreB cytoskeleton and save the available ATP for essential housekeeping tasks in the stressed cells. Actin aggregates that resemble the stress-induced MreB structures reported herein are also found in dormant eukaryotic cells (29). Since MreB is an abundant protein, the oxidation of this protein may also act as a "radical sink" to neutralize reactive species generated in the cell under stress, as opposed to actin (23).
Conclusions.
This work elucidates the patterns of expression and localization of MreB in V. parahaemolyticus under normal and stressed conditions. The changes in the expression level of mreB and the subcellular localization of MreB were related to changes in subcellular architecture and cell morphology. This information will improve our understanding of the mediation by the MreB cytoskeleton of cellular responses to both internal and external signals. The striking similarities between the behaviors of prokaryotic MreB and eukaryotic actin cytoskeletons under stress suggest some universal mechanisms that are used by cells to cope with environmental fluctuations.
Ted Knoy is appreciated for his editorial assistance.
Published ahead of print on 26 September 2008. ![]()
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