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Applied and Environmental Microbiology, February 2008, p. 708-715, Vol. 74, No. 3
0099-2240/08/$08.00+0 doi:10.1128/AEM.01537-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

University of Maryland Institute for Advanced Computer Studies, University of Maryland, College Park, Maryland,1 Center of Marine Biotechnology, University of Maryland Biotechnology Institute, Baltimore, Maryland,2 International Center for Diarrhoeal Disease Research, Bangladesh, Dhaka, Bangladesh,3 Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland4
Received 6 July 2007/ Accepted 21 November 2007
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Bioluminescence is a property possessed by several marine bacteria, mostly members of the family Vibrionaceae, including subpopulations of environmental isolates of V. cholerae (10, 13). Luminescence is controlled by the lux operon and is regulated in a cell density-dependent manner, termed quorum sensing or autoinduction, a response in target gene expression when extracellular signal molecules, called autoinducers, reach a critical concentration. Bassler et al. (3) reported that V. cholerae O1, as well as Vibrio anguillarum, Vibrio parahaemolyticus, Vibrio alginolyticus, and Vibrio natriegens were able to induce bioluminescence in Vibrio harveyi reporter strains, indicating that lux regulatory genes are present. The genomic sequence of V. cholerae O1 El Tor N16961 includes several homologues of the well-characterized V. harveyi lux regulatory system (5), including luxO, -P, -Q, -R (hapR [6]), -S, -U, and -N (cqsS [9]). Notably missing from the genome sequence of V. cholerae N16961 is the lux"structural" operon, comprised of five essential genes, luxCDABE.
Twenty years ago, West et al. (13) conducted a numerical taxonomic study of vibrios and found that 11/115 (10%) strains of V. cholerae were bioluminescent, as determined by examining colonies on agar plates in the dark after a period of adjustment. Palmer and Colwell (10) reexamined 62 of the 115 nonluminescent strains from the study by assaying 6-h LB broth cultures using both visual examination and liquid scintillation counting. They found that 5% (3/62) were dimly luminescent (by visual examination) and 16% (10/62) emitted "low-level" light (detectable solely by the liquid scintillation counting). Additionally, 56% (35/62) hybridized to a Vibrio fischeri luxA probe.
In this study, we developed a method that allowed a more sensitive assay for expression of luminescence in Vibrio cholerae. Additionally, we employed a V. cholerae-specific genetic screen for the lux gene luxA to confirm luminescent strains identified by the expression assay. We reevaluated 47 previously characterized V. cholerae strains (10) and screened 224 environmental V. cholerae isolates from Chesapeake Bay, MD; 400 environmental and 156 clinical V. cholerae isolates from Bangladesh; and an additional 48 V. cholerae clinical isolates from various sources for luminescence to determine the natural occurrence of this trait. Luminescence assay results were compared to results of either luxA PCR or dot blot hybridization to assess the sensitivity and specificity of the assay. Luminescence expression levels of selected groups of V. cholerae were also investigated in detail, with isolates characterized according to luminescence expression.
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TABLE 1. Bacterial strains used in this study
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was assayed; therefore, a mean luminometer reading of 30 RLU or higher was considered positive. Simultaneously, culture density was measured using optical density at 600 nm (OD600), employing a DU640 UV/visible spectrophotometer (Beckman-Coulter, Fullerton, CA). Five media were tested for producing optimal luminescence in V. cholerae: Luria-Bertani medium plus 1% NaCl (LBN), luminous medium (LUM) (ATCC medium 731), autoinducer bioassay medium (AB) (2); Photobacterium medium (PB), and Marine broth 2216 (MB) (Difco, Detroit, MI).
Different air-to-sample volume ratios were tested to determine the optimal ratio for the luminescence bioassay at a constant shaking speed of 200 rpm. Culture tubes (16 by 125 mm) were filled with 2.5-, 5-, or 10-ml sample volumes, and 150-ml Erlenmeyer flasks were filled with 75, 50, 25, or 10 ml of sample. Three representative strains from group I, i.e., V. cholerae UM4057, UM4086, and UM4102, were assayed in triplicate.
V. cholerae luxA PCR.
To test the sensitivity of the luminescence assay, luxA PCR amplification or luxA dot blot hybridization was performed on genomic DNA extracted from each V. cholerae isolate used in this study. For groups I and IV, luxA PCR was used. A new, highly specific V. cholerae luxA PCR primer pair (VCluxA108F/757R), 5'-CGAAGCGGTTTGGTTGCTA-3' and 5'-CGGGTAGCATTGACGTAGGA-3', which amplify a 650-bp fragment, were designed. Confirmatory luxA PCR, using Taq polymerase (Promega, Madison, WI), was performed according to standard protocols.
V. cholerae luxA dot blot hybridization.
For groups II, III, and V, luxA dot blot hybridization was performed. DNA was extracted using the DNeasy tissue kit (Qiagen) and dot blotted onto MagnaCharge membranes (Osmonics, Westborough, MA) according to the manufacturer's instructions. A 650-bp luxA probe labeled with digoxigenin (DIG)-dUTP was produced, using the PCR DIG probe synthesis kit (Roche Molecular Biochemicals, Mannheim, Germany) and primers VCluxA108F/757R (described above). The PCR product was analyzed by agarose gel electrophoresis. Hybridization was performed using the DIG detection starter kit II (Roche Molecular Biochemicals). Dot blots were hybridized at 45°C overnight. Autoradiography was performed for 20 min at 25°C.
Luminescence expression.
Luminescence expression levels of groups I, II, and III were analyzed to determine a reference, or "normal," intensity of expression (10,001 to 100,000 RLU) and to identify "dark" (luxA+ and nonluminescent; 0 RLU), "dim" (1 to 100 RLU), and "defective" (101 to 10,000 RLU) strains. Luminescence activity is reported as the maximal expression value over at least four time points and at least three replicates, in all cases. Early investigations determined a concise window for measurement, based on culture density. V. harveyi ATCC 14126, V. fischeri ATCC 7744, and V. cholerae biotype Albensis ATCC 14547 served as positive controls and E. coli DH5
and uninoculated medium as negative controls.
Growth and luminescence kinetics.
Growth and luminescence curves were measured for three strains of V. cholerae to compare the luminescence kinetics of V. cholerae to those of V. harveyi and V. fischeri. Luminescence, culturable plate counts on Marine agar 2216 plates, and OD600 were measured every hour for a minimum of 24 h. All experiments were performed at least in triplicate.
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TABLE 2. Expression of luminescence by five strains of V. cholerae in five media, examined over a 10-hour time period
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FIG. 1. Growth of V. cholerae UM4089 in five media during incubation for 10 h. Squares, LBN; triangles, LUM; diamonds, AB; circles, PB; dashed line, MB.
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TABLE 3. Phenotypic expression and genotypic confirmation of luminescence in 47 previously characterized strains of V. cholerae
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Dot blots of DNAs extracted from the 224 isolates were probed using a DIG-labeled 650-bp V. cholerae luxA probe. Fifty-eight percent (130/224) were positive for luxA by hybridization. In addition to the 116 strains that were luminescent by assay, 14 strains were positive for luxA but did not express luminescence. These 14 strains were retested, with the same results.
Similarly, group III, IV, and V isolates were assayed for luminescence expression and screened for luxA by PCR or dot blot hybridization. For group III, none of the O1 or O139 serogroup isolates (0/40 and 0/26, respectively) were luminescent. Among the non-O1/non-O139 strains from group V, 6% (21/334) were luminescent and 11% (35/334) harbored the luxA gene. For groups IV and V, 0% (0/48 and 0/156, respectively) were luminescent or harbored luxA. Additionally, 17 strains of V. mimicus were tested, and all were negative by the bioassay and the genotypic screen.
Distribution of luminescence expression among V. cholerae.
Groups II and III were categorized by level of maximal luminescence expression in an effort to define reference luminescence expression levels for V. cholerae (Fig. 2). The values of maximum luminescence expression obtained for each isolate, which were measured over a period of 4 h, are shown grouped, using a log-scale distribution. This was done because of the wide dynamic range of luminescence expression that was measured. Of 116 luminescent strains isolated from the Chesapeake Bay, 85.3% were luminescent at a level of 10,000 to 100,000 RLU. This range of expression is referenced as normal, since it represents the highest percentage of luminescent isolates from either group and contains the mean expression of all luminescent isolates of both groups. Among luminescent strains from the Chesapeake Bay (group II), 15% revealed a defect in luminescence expression (Fig. 2A), with 11 isolates (9.5%) luminescent at 10% of normal, 5 isolates (4.3%) luminescent at 1% of normal, and 1 strain expressing luminescence at below 0.1% of normal. Two of the 16 defective strains of group II are accounted for by the fact that they were at low cell density at the time luminescence was measured (Fig. 3A). These two grew much more slowly than the other 222 isolates and did not reach an OD600 of above 0.5 after 12 h of growth.
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FIG. 2. Distribution of luminescent V. cholerae by luminescence expression level. (A) Chesapeake Bay (group II); (B) Bangladesh (group V). RLU is defined in Materials and Methods. The expression level of 15 RLU is the lowest considered luminescent.
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FIG. 3. Distribution of luminescent V. cholerae from Chesapeake Bay (group II) (A) and Bangladesh (group V) (B) by luminescence expression level compared to cell density at time of measurement (OD600). RLU is defined in Materials and Methods.
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In addition to visibly luminescent strains, groups II and III both contained "dark" strains, i.e., strains containing at least one gene from the lux operon but emitting no visible light. In group II there were 14 such isolates (6.3%), and in group III there were also 14 (4.2%).
The 12 luminescent V. cholerae strains from group I were also characterized by luminescence expression. Strains UM4071, UM4072, UM4075, and UM4086 are completely "dark" strains (nonluminescent but harboring luxA). Strains UM4056, UM4091, and UM4103 are "dim" strains (0.1 to 1% of normal), with light expression that is barely detectable (
20 RLU). Strain UM4102 expressed luminescence at a normal level, and UM4089 expressed luminescence at a level above normal, or a "super-bright" level.
Growth curve and luminescence kinetics.
The growth and luminescence for three strains of luminescent V. cholerae from group I (UM4086, UM408, and UM4103) with different levels of maximal luminescence expression, as well as one control strain of V. fischeri (MJ-100) and V. harveyi (BB-120) were assayed over a 24-h period (Fig. 4) to determine how expression of luminescence in V. cholerae compared to that in the other two species; V. fischeri and V. harveyi were assayed longer since their growth was slower (Fig. 4D and E). The three strains of V. cholerae expressed luminescence during mid- to late-exponential growth, consistent with an autoinduction-controlled phenotype (Fig. 4A to C).
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FIG. 4. Growth-luminescence kinetic curves for V. cholerae UM4089 (A), V. cholerae UM4086 (B), V. cholerae UM4103 (C), V. fischeri MJ100 (D), and V. harveyi BB120 (E). Cell density is shown by cell plate counts (cells/ml; triangles) and OD600 (diamonds), and luminescence is shown as RLU (squares).
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The three strains of luminescent V. cholerae revealed a noteworthy trend, i.e., that initiation of luminescence determined the maximum expression level of luminescence. That is, when initiation of luminescence occurred earlier in the growth curve (approximately mid-log phase), luminescence expression was higher. For example, V. cholerae UM4089 represents a "super-bright" luminescent V. cholerae strain. For this strain, the onset of luminescence expression occurred at a cell density of 1.5 x 107 cells/ml or an OD600 of 0.0421 (Fig. 4A). For V. cholerae UM4086, which is a defective strain, the onset of luminescence expression occurred later in the growth cycle (approximately mid- to late-log phase) than for UM4089, at a higher cell density (7.6 x 107 cells/ml; OD600 of 0.1937) (Fig. 4B). In V. cholerae UM4103, a "dim" strain, the onset of luminescence expression was even later (approximately late-log phase), at a cell concentration of 1.1 x 108 cells/ml or an OD600 of 0.2177. The onset of luminescence expression is early in both V. fischeri and V. harveyi (Fig. 4D and E), translating into a high luminescence expression level. The growth and luminescence kinetic profile for V. cholerae biovar Albensis were also examined and found to be similar to those for V. cholerae UM4089 (not shown).
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In this study, an improved method for determining bioluminescence expression by V. cholerae was developed using mid- to late-exponential-phase broth cultures, grown in MB, and a luminometer for detection. Not surprisingly, mid- to late-exponential-phase broth cultures were most effective for assaying luminescence expression, which is a quorum-sensing controlled phenotype, as shown in Fig. 4A to C.
A total of five media were tested and MB was concluded to be the most effective for detecting luminescence, with a significantly greater expression of luminescence (Table 2). This result was confirmed when 47 of the 62 strains of V. cholerae that had been examined in the earlier study by Palmer and Colwell (10), were retested using our luminescence bioassay. MB (67% sensitivity) was found to be 50% more effective than LB medium (33% sensitivity) for detection of luminescence (Table 2). In addition, the intensity of luminescence in LB broth was significantly less than that in MB.
Not surprisingly, expression of luminescence by V. cholerae UM4102, UM4086, and UM4057 was observed to be stimulated by oxygen. The optimum ratio of air to liquid medium was 5:1 (tubes) to 6:1 (flask). Interestingly, luminescence expression decreased from maximum at ratios promoting the highest growth rates (15:1 and 10:1).
The luminometer was able to monitor luminescence in the range of 20 to 2,000,000 RLU, with a background of 20 RLU for uninoculated medium or nonluminescent E. coli DH5
. In comparison, the study by Palmer and Colwell (10), employing liquid scintillation counting, exhibited a range of RLU values of only 6.2, with a minimum value of 5.6 (Table 3). This lack of specificity resulted in five false-positives, UM4097, UM4100, UM4104, UM4105, and UM4178 (Table 3), in the previous study.
In this study, a high percentage (52%) of luminescent strains of V. cholerae isolated from the Chesapeake Bay, MD, an estuarine environment (group II), was observed. This proportion of luminescent strains was higher than that previously reported for V. cholerae (10%) (13). This result is explained primarily by the greater sensitivity of the luminescence bioassay. Additionally, group II (and III) strains were isolated from samples collected at regular sampling times in surveys of the seasonal and geographical distribution of V. cholerae in Chesapeake Bay, MD (group II), and rural Bangladesh (group III). The 47 strains of group I were, however, a laboratory collection of V. cholerae isolates from Louisiana (27 isolates), Chesapeake Bay (6), Tilamook Bay, Oregon (12), Florida (1), and England (1).
The lux structural operon was not present in the Vibrio cholerae O1 or O139 serogroup strains examined in this study, whether clinical strains from sources around the world (groups IV and V) or environmental strains from Bangladesh (group III), yet the lux regulatory genes are present in the V. cholerae O1 strain that has been sequenced (5). This observation could be interpreted as suggesting either a significant evolutionary divergence between pathogenic and nonpathogenic strains of V. cholerae)if a common luminescent ancestor is assumed) or lateral transfer of genes to be a common mechanism for vibrios, especially when attached to chitinous surfaces (8). The lux operon also was not present in the 17 strains of the closely related species V. mimicus that were examined in this study.
A comparison of strains of V. cholerae isolated from a region of Bangladesh where cholera is endemic (group III, 6%) and from the Chesapeake Bay, an area where cholera is not endemic (group II, 52%), suggests that habitat and species diversity may influence the incidence of the luminescent phenotype. The occurrence of cholera in the Chesapeake Bay subsided in the early 20th century when sanitation and water treatment systems were installed. Nevertheless, V. cholerae, an estuarine bacterium, is a normal component of the Chesapeake Bay without the occurrence of epidemic cholera. In Bangladesh, neither appropriate sanitation nor safe drinking water systems are available to remote villages, and therefore cholera epidemics persist. In subsequent work, we will address this finding by analyzing strain diversity and examining environmental parameters.
In addition to the occurrence of luminescence, the pattern of luminescence expression also was different between the isolates from the Chesapeake Bay, MD, and Bangladesh. The majority (76%) of the luminescent strains of V. cholerae isolated from the Chesapeake Bay, MD, expressed light at an intensity characterized as "normal" for V. cholerae, namely, 104 to 105 RLU using this bioassay, although greater intensity was observed for 2 of the 875 strains used in this study. Only 1 of 116 (0.8%) Chesapeake Bay isolates was classified as "dim," and 16 isolates (14%) had some degree of defect in their luminescence expression. In contrast, luminescent strains from Bangladesh yielded a distribution that was bimodal, with 52% expressing luminescence at normal levels and 29% being classified as "dim."
In this study, we found that "dark" or K variants of luminescent V. cholerae occur commonly in nature (Fig. 2). Group I, screened using luxA PCR, contained 4 (8.5%) luxA+ strains of V. cholerae that were not luminescent, while group II contained 14 (6.3%) and group III also contained 14 (4.2%). These strains can be explained by mutations in the lux operon or altered or defective regulation, but the exact cause for each strain was not investigated in this study. These strains account for the lack of sensitivity in the bioassay (67% sensitivity). Altered formulations of MB and additives reported to enhance luminescence expression were tested but failed to induce any detectable luminescence expression in these strains (data not shown).
Maximal expression of luminescence in V. cholerae was found to be, on average, 10% less than that in V. harveyi and V. fischeri (Fig. 4). Additionally, the rate of expression of luminescence, i.e., time of onset of luminescence to maximal expression, was higher in V. cholerae than in V. harveyi and V. fischeri (Fig. 4A and B compared to 4D and E).
Czyz et al. (4) showed that lux mutant strains are dominant to lux+ strains of V. harveyi under normal growth conditions. Conversely, lux+ strains of V. harveyi became dominant to lux mutant strains in cultures exposed to stress and damage induced by low levels of UV irradiation. It has been proposed that expression of the luciferase gene may help facilitate the bacterial DNA repair process by providing an internal light source for photoreactivation, a photo-mediated repair mechanism (4, 12). Alternatively, when attached to larger particles, such as detritus or plankton, V. cholerae may be afforded protection from UV damage, as would occur in Bangladesh ponds where turbidity is high (1). Further investigation of the functionality of the lux operon for the apparently nonsymbiotic but commensal species V. cholerae is needed, since the phenotype occurs more frequently than previously determined and demonstrates a dynamic expression range.
Published ahead of print on 7 December 2007. ![]()
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