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Applied and Environmental Microbiology, May 2008, p. 2583-2587, Vol. 74, No. 9
0099-2240/08/$08.00+0 doi:10.1128/AEM.00626-07
Copyright © 2008, American Society for Microbiology. All Rights Reserved.

Department of Soil, Water, and Environmental Science, University of Arizona, P.O. Box 210038, Tucson, Arizona 85721-0038
Received 19 March 2007/ Accepted 26 February 2008
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Cell culture is the most commonly use method for the isolation of infectious viruses from water (18). The Buffalo green monkey kidney (BGM) cell line is very sensitive to infection by poliovirus and coxsackievirus B and is the most common cell line used for the detection of such viruses in water (6). The BGM cell line recommended for the total culturable viral assay (TCVA) is the standard method for the enumeration of viruses from water (26). The TCVA depends on the ability of the viruses to propagate in BGM cells and create morphological changes or cytopathic effects (CPE) that can be identified and quantified. The combination of the BGM cell line with other cell lines such as A549, human colon adenocarcinoma (Caco-2), and primary liver carcinoma (PLC/PRF/5) lines for the surveillance of viruses in water has been reported to increase the sensitivity for the detection of adenoviruses, coxsackie A viruses, echoviruses and astroviruses, or other viruses that do not grow effectively on BGM cells (4, 22, 23, 29).
PLC/PRF/5 is a more efficient cell line for the propagation of adenoviruses 40 and 41 than Graham 293, Chang, KB, and A549 (9). In addition, the PLC/PRF/5 cell line has been effectively used for the detection of adenoviruses in river water and treated drinking water (27, 28), and it is also susceptible to infection by many enteroviruses, including coxsackie B viruses and reoviruses (10). The selection of a sensitive cell line for the determination of culturable viruses in water is important because it decreases the cost and effort required by avoiding the use of multiple cell lines.
This study compares the use of the BGM cell line with the PLC/PRF/5 line during the evaluation of a high-rate treatment process for sewage. This process consists of a chemically enhanced flocculation followed by UV disinfection and was designed to treat wet-weather influents (WWI) to reduce sewage overflow and the release of untreated sewage. Samples from a wastewater treatment plant (WWTP) before and after chlorination, chemically enhanced flocculation of the effluent, and UV treatment were collected and subjected to a TCVA on both BGM and PLC/PRF/5 cell lines.
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TCVA. (i) Sample processing.
One-liter samples were shipped on ice from the WWTP to the laboratory and processed within 48 h after sampling. The samples were concentrated by organic flocculation as described previously (26). Sample concentrates were resuspended in 30 ml of 0.15 M sodium phosphate with a final pH after resuspension of 7.2, and 0.3 ml of 100x antibiotic mix containing 10,000 units of penicillin G, 10,000 units of streptomycin sulfate, 25 µg/ml of amphotericin B, 0.3 ml of kanamycin sulfate (10 mg/ml), and 0.3 ml of gentamicin (5 mg/ml) was added. The concentrates were frozen at –80°C until assayed on cell culture. The efficiency of the organic flocculation averaged 60% using poliovirus type 1 (LSC-2ab; obtained from Baylor College of Medicine).
(ii) Cell culture infection.
The PLC/PRF/5 cell line (passage level 26 to 36; ATCC CRL-8024) and the BGM cell line (passage level 121 to 140; Unites States Environmental Protection Agency, Cincinnati, OH) were used in this study. The concentrates were split into a 15-ml subsample and a 4.5-ml subsample. From the 15-ml subsample, volumes of 2.5 ml were inoculated into 75-cm2 flasks containing 3- to 4-day-old monolayers. If more than three flasks were positives for CPE, then from the 4.5-ml subsample volumes of 1 ml were inoculated into 25-cm2 flasks. In the case of toxicity or if all the samples were positive, the concentrate was diluted 1/10, and 1 ml was inoculated into 25-cm2 flasks. The cells were between 3 to 5 days old with a confluent monolayer at the time of infection. The flasks were incubated with the sample at 37°C with slow agitation for 2 h. The concentrate was then removed, and the flasks were covered with minimal essential medium (catalog item 11700-077; Gibco Invitrogen Corporation, Grand Island, NY) supplemented with 2% fetal bovine serum (HyClone, Logan, UT), 1 mM sodium pyruvate, and 2 mM GlutaMAX (35050-061; Invitrogen, Grand Island, NY) and incubated for 14 days at 37°C. The flasks were examined for CPE every day. The medium was changed every 4 days.
(iii) Confirmation of positive and negative flasks.
Flasks that were showing signs of CPE or were negative after 14 days of incubation were frozen at –20°C and thawed three times, filtered though a 0.22-µm-pore-size membrane filter, and inoculated onto flasks containing fresh cell monolayers (3 to 5 days old) to confirm viral CPE. The flasks were incubated for 14 days as described before.
The viral most probable number (MPN)/liter was determined using the MPN General Purpose Program by Hurley and Roscoe (11). The viruses were harvested from the confirmatory flasks (CPE-positive flasks) or from the second-passage flasks (CPE-negative flasks) by three freeze-thaw cycles and kept at –20°C until PCR and reverse transcription-PCR (RT-PCR) analysis.
One-step RT-PCR and nested-PCR for the detection of enteroviruses.
Prior to RT-PCR analysis, the cell lysate was heated to 97°C for 5 min and chilled on ice. Ten microliters of cell lysate was mixed with 40 µl of RT-PCR mixture. The reaction mixture contained 1.0x reaction buffer (10x buffer consisting of 100 mM Tris-HCl, pH 8.00, and 500 mM of KCl), 3.5 mM MgCl2, a 300 µM concentration of each deoxynucleoside triphosphate (dNTP), 1.2 µM random hexamer mixture (Applied Biosystems, Roche Molecular Systems Inc. Branchburg, NJ), 10 units of RNase inhibitor (Applied Biosystems, Roche Molecular Systems, Inc., Branchburg, NJ), 25 units of murine leukemia virus reverse transcriptase (Applied Biosystems, Roche Molecular Systems, Inc., Branchburg, NJ), a 0.5 µM concentration of each primer (P1 and P2), 1.2 units of Amplitaq GOLD (Applied Biosystems, Roche Molecular Systems, Inc., Branchburg, NJ), and nuclease-free water, for a final volume of 50 µl.
The nested PCR mixture consisted of 1x PCR buffer, 2.9 mM MgCl2, a 200 µM concentration of each dNTP, a 0.4 µM concentration of each primer (P1 and P33), 1.25 units of Amplitaq GOLD (Applied Biosystems, Roche Molecular Systems, Inc. Branchburg, NJ), and 2 µl of the one-step RT-PCR products, for a final reaction mixture volume of 50 µl. The primers specific for enteroviruses were P1 upstream (5'-CCTCCGGCCCCTGAATG-3'), P2 downstream (5'-ACCGGATGGCCAATCCAA-3'), and Ent 33 downstream (5'-CCCAAAGTAGTCGGTTCCGC-3') (21). The first round of PCR used the set of primers P1 and P2, with an amplified fragment of 195 bp. The second round of PCR used the set of primers P1 and P33, with an amplified fragment of 105 bp.
The conditions for the RT-PCR were modified from the conditions previously published by Reynolds et al. (20). The PCR conditions for the one-step RT-PCR were as follows: 44°C for 60 min, 99°C for 10 min, 25 s at 50°C, and 45 s at 72°C; 35 cycles of 25 s at 94°C, 25 s at 55°C, and 45 s at 72°C; and a final extension of 72°C for 7 min. The PCR conditions for the second round were as follows: 10 min at 94°C, 25 s at 55°C, and 45 s at 72°C; 35 cycles of 25 s at 94°C, 25 s at 60°C, and 45 s at 72°C; and a final extension step of 7 min at 72°C. The PCR products were analyzed by gel electrophoresis with 2% agarose in 0.5x Tris-borate-EDTA buffer and 5 µg/ml of ethidium bromide. The voltage was set at 5V/cm, and the gel was visualized using an AlphaImager 2000 (Alpha Innotech Corporation, San Leandro, CA).
Detection of adenovirus by PCR.
The PCR procedure for adenovirus was obtained from Van Heerden et al. (27). The primers for adenovirus were obtained from Avellón et al. (1). The primers for the first round of PCR were ADHEX1F (5'-AACACCTAYGASTACATGAAC-3') and ADHEX2R (5'-KATGGGGTARAGCATGTT-3'), with an amplified fragment of 473 bp. The primers for the second round of PCR were ADHEX2F (5'-CCCMTTYAACCACCACCG-3') and ADHEX1R (5'-ACATCCTTBCKGAAGTTCCA-3'), with an amplified fragment of 168 bp. The PCR mixture consisted of 1x PCR buffer, 2.5 mM MgCl2, a 200 µM concentration of each dNTP, a 1 µM concentration of each primer, 1 U of Amplitaq GOLD polymerase, 10 µl of sample, and water to a total volume of 50 µl. The conditions for the first round and nested PCR were the following: 10 min at 94°C; 35 cycles of 30 s at 94°C, 30 s at 50°C, and 30 s at 72°C; and a final extension of 10 min at 72°C. The conditions for both PCRs were the same. The PCR products were analyzed as described above.
Quality control assurance.
The cell culture facility and incubators were physically separated from the PCR facility. One biological hazard type II hood was used for processing the concentrated samples, and another was used for cell supernatants. The PCR facility consisted of four rooms to physically separate activities related to reagent preparation, sample processing, mixing of the RT-PCR and PCR mixtures, the mixing of first-round PCR product with nested PCR mixture, and gel electrophoresis. All the RT and PCR reagents were mixed in the workstation in the room for reagent preparation. The first-round PCR product and nested PCR solution were mixed in a workstation used exclusively for this function. The PCR workstations had no forced airflow and UV light. All the reagents were stored in a separate room from the samples. The workstations were cleaned with 10% bleach solution and exposed to UV light for at least 20 min. The equipment used in each room was not used in other areas (i.e., pipettes, tips, and laboratory coats were exclusive to each room). The PCR thermocyclers were in another room outside the work area. RNA-free water was used as a negative control.
Statistical analysis.
The reduction in viral concentration was calculated using the following formula: log10 reduction = log10 (Nt/N0), where Nt is the concentration of virus at time t, and N0 is the initial concentration of virus. The difference in titer between both cell lines was analyzed using one-way analysis of variance (Minitab 14; Minitab Inc. Cary, NC).
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View this table: [in a new window] |
TABLE 1. Culturable virus concentrations obtained with BGM and PLC/PRF/5 cell lines and the detection of enterovirus and adenovirus genomes in the infected cells
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Eighteen of the samples that were positive using the PLC/PRF/5 cell line were negative using the BGM cell line. None of the culture-negative samples on PLC/PRF/5 cells were positive on the BGM cell line. The amount of virus detected on the PLC/PRF/5 cell line TCVA was up to 44 times greater than the values obtained using BGM cells. The difference in titers obtained between the PLC/PRF/5 and BGM cell lines was statistically significant (P value of 0.007).
All of the flasks, including monolayers negative for CPE, were tested by PCR for the presence of adenoviruses and enteroviruses to assess the presence of noncytopathic enteroviruses or adenoviruses on the BGM monolayer. None of the samples were positive for adenoviruses, and one sample from the secondary clarifier was positive for enteroviruses. The presence of adenoviruses and enteroviruses was confirmed by PCR for all PLC/PRF/5 monolayers showing CPE. Seven samples (33%) were positive for enteroviruses, and 11 samples (52%) were positive for adenoviruses out of 21 samples. Three samples were positive for both viruses. From the 18 samples that were CPE positive on the PLC/PRF/5 cell line and negative on the BGM cell line, 6 samples were positive for enteroviruses, and 8 samples were positive for adenoviruses.
Figure 1A shows the adenoviruses and enteroviruses identified in CPE-positive flasks on the PLC/PRF/5 cell line of the WWTP effluent samples. Of the CPE-positive flasks from the prechlorination samples (secondary clarifier effluent), adenovirus was detected in five, and enteroviruses were detected in three. In the chlorine contact effluent, adenoviruses and enteroviruses were detected in equal numbers of samples (three each).
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FIG. 1. Detection of adenoviruses and enteroviruses in PLC/PRF/5 CPE-positive flasks after the secondary clarifier and chlorine disinfection (A) and after enhanced primary clarification and UV disinfection (B). Unidentified flasks are those that were negative for adenoviruses and enteroviruses but demonstrated viral CPE.
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In our study, no adenoviruses were detected in the BGM cell line. Previous studies have demonstrated the detection of adenovirus on BGM cells from water samples by using a combination of cell culture and PCR, indicating that CPE was not produced in the BGM cells (16). Because we found a high number of samples positive for adenoviruses producing CPE on PLC/PRF/5 cells, we tested all of the second- and third-passage BGM flasks by PCR with specific primers for adenoviruses. For the detection of the adenovirus genome in cell supernatants by PCR, incubation times of at least 10 days may be needed at concentrations as low as 10–2 50% tissue culture infective doses in inoculums of concentrated samples used for cell culture assays (16). In our study, each passage was incubated for 14 days, and two to three passages for each sample were used; therefore, there was sufficient time for the slower-growing adenoviruses to be detected on the BGM cell line. In addition, adenovirus has been detected in cell lines such as A549 by PCR (14, 15) and PLC/PRF/5 by CPE (10) in samples that were negative using the BGM cell line. The combination of the PLC/PRF/5 cell line and PCR has been used to detect adenovirus without evidence of CPE after incubation periods of 7 days (28) to 14 days (27), suggesting the possibility of using the PLC/PRF/5 cell line in an integrated cell culture and PCR approach to detect adenoviruses in shorter periods than the 24-day incubation used in our study.
A surveillance of viruses in the sewage of Jones Island WWTP in the MMSD reported that of the viruses isolated, 68% were reoviruses, 28% were enteroviruses, and 4% were adenoviruses (23). The enteroviruses isolated from sewage included echovirus (80%), coxsackievirus B (14%), poliovirus (4%), and coxsackievirus A (1.1%) (21). Seven different cell lines were used in these studies, including the MK-1, HEP-2, HPS, HEL, BGM, RD, and Caco-2 lines. Fourteen percent of all the enteroviruses were isolated on BGM cells, which includes 83% of the coxsackievirus B and 1.9% of the echoviruses (22). Previous studies using clinical isolates have indicated that the BGM cell line is very sensitive to coxsackievirus B and not very sensitive to echovirus infection (5). There is no previous work describing the sensitivity of the PLC/PRF/5 cell line to echovirus infection. But the greater detection of enteroviruses observed in comparison with BGM and the proportion of echovirus previously reported in sewage (22) suggest that the PLC/PRF/5 cell line may be more sensitive to echovirus infection than the BGM cell line.
We found that the proportion of viruses isolated before disinfection changed in contrast to the proportion of viruses isolated postdisinfection. The proportion of enteroviruses increased after disinfection with chlorination, suggesting that chlorine disinfection produced at this plant during wet weather was not very effective for inactivating the enteroviruses detected in this study. This may be because the free chlorine in sewage combines with ammonia to produce chloramine (which is less effective than chlorine). In contrast, the UV treatment was very effective at inactivating enteroviruses but not adenoviruses. This result is in agreement with the observation that adenoviruses are very resistant to UV inactivation (17, 25).
The use of multiple cell lines will increase the probability of isolating the maximum number of viruses from wastewater (5, 22, 23). However, this drastically increases the cost per sample, and usually only one cell line is used. Currently, the recommended cell line in the United States for water and wastewater analysis is the BGM cell line. The advantage of using the PLC/PRF/5 cell line for the detection of viruses from treated sewage is not only that it had greater sensitivity but also that the viruses detected with this cell line were more resistant to disinfection and treatment. If only the BGM cell line had been used, then the effectiveness of the disinfectant treatment process would have been overestimated. In conclusion, our results demonstrate that the PLC/PRF/5 cell line is a more suitable cell line than the BGM cell line for the enumeration of total culturable virus from sewage. Other cell lines such as the human colon carcinoma cell line have the ability to propagate a wide range of viruses including adenovirus 40, astrovirus, enteroviruses, and hepatitis A virus (19), which may be useful to increase the types of infectious virus detected.
Published ahead of print on 7 March 2008. ![]()
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