Files in this Data Supplement:

• Supplemental file 1 - Taxonomic list and occurrence of protozoan taxa in enriched samples examined using light microscopy (Table S1); primary BLAST matches of sequences obtained from DGGE bands (Table S2); DCA ordination plots showing temporal variation in protozoan community composition in farm C (Fig. S1); two-way ANOVA for average microhabitat diversity by broiler house and habitat (Table S3); repeated-measures ANOVA and paired t tests for average microhabitat and total habitat diversity by farm, habitat, and sampling phase (Table S4).
  Zipped MS Word document, 174K.