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Applied and Environmental Microbiology, March 2009, p. 1597-1603, Vol. 75, No. 6
0099-2240/09/$08.00+0 doi:10.1128/AEM.02004-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Division of Bacteriology, Osaka Prefectural Institute of Public Health, Osaka, Japan,1 Department of Veterinary Public Health, Faculty of Agriculture, University of Miyazaki, Miyazaki, Japan2
Received 29 August 2008/ Accepted 4 January 2009
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Since stool samples from patients often contain large numbers of viable campylobacters, it is not difficult to isolate the organisms by direct plating on selective media without enrichment. Food products, however, may harbor only small numbers of campylobacters, and they may be injured. Therefore, enrichment is essential to recover Campylobacter cells. To determine the causative food in incidents caused by C. jejuni-C. coli, microbiological examinations have been performed. The rate of isolation of C. jejuni-C. coli from food samples associated with food poisoning incidents is, however, approximately 10% in Japan (14). The remaining 90% of the causative foods are unknown due to the difficulty of recovering C. jejuni-C. coli from food samples (14, 17).
The test procedure includes plating a sample onto selective agar medium and subsequent identification of suspected colonies on the agar medium after a pure culture is obtained. The bacterial culture tests for campylobacters from samples require 2 to 3 days and are time-consuming and laborious. Further, an enrichment procedure is required for food samples to increase the small numbers of campylobacters and reduce the growth of the background flora before selective plating of cultures. Therefore, it takes at least 3 to 4 days for identification of the isolates. Given these limitations, a rapid, simple, and practical assay to detect C. jejuni and C. coli in chicken meat is required.
Several investigators have developed loop-mediated isothermal amplification (LAMP) assays (19, 21, 25) to detect pathogenic microorganisms, such as C. jejuni and C. coli, verotoxin-producing, enterotoxigenic, and enteroinvasive Escherichia coli, Shigella, Salmonella, Helicobacter pylori, Vibrio cholerae, Mycobacterium tuberculosis, and norovirus (10, 11, 16, 18, 30, 32, 33, 35, 36). A LAMP assay is faster and easier to perform than conventional PCR assays, as well as more specific (10, 33). Furthermore, because the LAMP assay synthesizes a large amount of DNA and its by-product, an insoluble white precipitate of magnesium pyrophosphate, the by-product can be detected by a simple turbidity analysis. Also, the increase in the turbidity of the reaction mixture due to the production of the white precipitate correlates with the amount of DNA synthesized (10, 32, 33). Thus, compared to PCR assays, expensive equipment is not necessary to obtain a high level of precision (10, 11, 33). In addition, there are fewer preparation steps for the LAMP assay than for conventional PCR and real-time PCR assays, and LAMP assays require less time than the latter assays (12). These features allow simple, rapid, and cost-effective detection (10, 16).
We previously developed a LAMP assay to identify and directly detect C. jejuni and C. coli contaminants in pure cultures and human fecal specimens (32). In the present study, we established a simple and practical DNA extraction protocol to detect small numbers of C. jejuni and C. coli cells in spiked chicken samples. Subsequently, we evaluated the efficacy of a combination of the new DNA extraction protocol with the LAMP assay for rapid and sensitive detection of chicken samples naturally contaminated by C. jejuni and C. coli.
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DNA extraction from enrichment broth with three-step centrifugation procedures.
To improve the sensitivity of the LAMP assay, a DNA extraction protocol was modified with three-step centrifugation procedures. The purposes of the three-step centrifugation procedures are to remove larger debris from chicken samples and components of the Preston enrichment broth containing inhibitors of DNA amplification and to concentrate the small number of Campylobacter cells. Concurrent with strain isolation, C. jejuni and C. coli detection was performed by LAMP testing using 1 ml of each Preston enrichment culture sample, which was used for preparation of DNA templates. To remove larger debris in the chicken sample and components of the Preston enrichment broth, including horse blood, a Preston enrichment culture was thoroughly mixed and centrifuged at 900 x g for 1 min. The resulting supernatant was transferred to a new 1.5-ml microcentrifuge tube and centrifuged at 10,000 x g for 5 min. Fatty components visually confirmed to be on the microcentrifuge tube wall, which were derived from chicken meat, were removed using a sterile cotton swab. After removal of the supernatant, pellets were resuspended in 50 µl of NaOH (25 mmol liter–1), thoroughly mixed using a Vortex-Genie 2, and heated at 95°C for 5 min. After neutralization with 4 µl of Tris-HCl buffer (1 mol liter–1, pH 7.5), debris was centrifuged at 4°C and 20,000 x g for 5 min. Supernatants were stored at –20°C until use, at which time 2-µl samples were used as template DNA for the LAMP assay.
LAMP assay.
The LAMP assay was performed using a Loopamp DNA amplification kit (Eiken Chemical Co. Ltd., Tokyo, Japan) as previously described (32). LAMP assays, which target two sequences presumed to contain an oxidoreductase gene and a gufA gene in C. jejuni and C. coli, respectively (6, 28), were performed using single 25-µl 1x reaction mixtures (Eiken Chemical) containing 2 µl of template DNA from a Preston enrichment culture, 1 µl of Bst DNA polymerase (Eiken Chemical), 1.6 µmol liter–1 each of inner primers FIP and BIP, 0.2 µmol liter–1 each of outer primers F3 and B3, and 0.8 µmol liter–1 each of loop primers LoopF and LoopB. Primer sequences are shown in Table 1. All primers were produced by Hokkaido System Science Co. Ltd. (Sapporo, Japan). In a Loopamp real-time turbidimeter, the reaction mixtures were incubated at 65°C for 60 min, followed by 80°C for 2 min to complete the reaction (LA-320; Teramecs Co. Ltd., Kyoto, Japan). Amplification in the LAMP assay was detected in real time as turbidity at 650 nm using an LA-320 turbidimeter. A reaction was considered positive when the turbidity reached 0.1 within 60 min. Turbidity visible with the naked eye was also considered to indicate a successful LAMP procedure (19). C. jejuni-C. coli-positive samples were further differentiated by the LAMP assay using the primer sets used to identify C. jejuni and C. coli and LAMP conditions identical to those described above. The LAMP assay was performed in a blinded fashion.
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TABLE 1. LAMP primers used for assays
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Preliminary study for evaluation of three-step centrifugation procedures.
A preliminary study was performed using 64 chicken samples and the method of the International Organization for Standardization (ISO) (15). Portions (25 g) of chicken samples were added to 225 ml Bolton enrichment broth (Oxoid) supplemented with 5% (vol/vol) lysed horse blood, homogenized with a stomacher (Pro-media SH-001; ELMEX Co. Ltd., Tokyo, Japan) for 1 min, and incubated at 37°C for 4 h and then at 42°C for 20 to 44 h under microaerobic atmosphere conditions. The protocol used for isolation of C. jejuni and C. coli was that mentioned above. In parallel, to evaluate the influence of inhibitors of DNA amplification from chicken samples and components of the enrichment broth and the effectiveness of centrifugation for concentrating the small number of C. jejuni-C. coli cells in enrichment broth, two DNA extraction protocols were compared. Following the manufacturer's instructions for a commercially available kit, template DNA was prepared from 42 chicken samples using a mixture containing 50 µl of a Bolton enrichment broth culture and 50 µl of Extraction Solution for Foods (Eiken Chemical), thoroughly mixed using a Vortex-Genie 2, and heated at 95°C for 5 min. After neutralization with 10 µl of Tris-HCl buffer (1 mol liter–1, pH 7.0), debris was centrifuged with a desktop centrifugation apparatus for 1 min. The other template DNA from 22 chicken samples from 1-ml Bolton enrichment broth cultures were prepared with three-step centrifugation procedures as mentioned above. All 64 template DNA were assayed by the LAMP assay.
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TABLE 2. Comparison of LAMP and C. jejuni-C. coli isolation results for 144 chicken meat samples
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TABLE 3. Comparison of C. jejuni and C. coli detection results for 144 chicken meat samples obtained with the LAMP assay and by culture on Butzler and mCCDA agars
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Of the 68 culture-positive samples, 67 were LAMP and culture positive, whereas 1 chicken thigh sample was LAMP negative and culture positive. For the 68 culture-positive samples, C. jejuni and C. coli were differentiated using the respective LAMP assays (Table 3). Among the 67 LAMP- and culture-positive samples, the LAMP assay identified 57 C. jejuni-positive, 5 C. coli-positive, and 5 C. jejuni- and C. coli-positive samples. The one remaining chicken thigh sample, which was LAMP negative and culture positive, was identified as C. jejuni positive by culture. Further, 74 of the 76 culture-negative samples were LAMP and culture negative, whereas 1 chicken wing sample and 1 thigh sample were C. jejuni LAMP positive and culture negative. An increase in turbidity was confirmed for all LAMP products using an LA-320 turbidimeter and by visual confirmation of turbidity. The results determined by the two methods consistently matched each other.
As shown in Fig. 1, the sensitivity of the LAMP assay for detection of C. jejuni and C. coli in spiked Preston enrichment cultures was determined in triplicate by using a real-time turbidimeter. The sensitivities for C. jejuni and C. coli were found to be 7.9 and 3.8 CFU per LAMP reaction tube. The dilutions yielding 790 to 7.9 CFU and 380 to 3.8 CFU showed an increase in turbidity, but the dilutions yielding 0.8 CFU and 0.4 CFU did not. Amplification in the LAMP assay could also be judged based on turbidity by visual assessment using the naked eye. The sensitivities determined by the two methods consistently matched. When the LAMP assay was performed in triplicate using 2-µl mixtures consisting of 1 µl template DNA containing 3.9 CFU C. jejuni and 1 µl template from a negative control sample, two of three samples showed positive results. Correspondingly, when 2-µl mixtures consisting of 1 µl template DNA containing 1.9 CFU C. coli and 1 µl template from a negative control sample were used, one of three samples showed a positive result. Further, all sensitivity tests with mixtures containing a known amount of C. jejuni and C. coli at different ratios showed positive results with the two methods, as expected (data not shown). The amount of background flora in the Preston enrichment cultures used for the sensitivity tests was approximately 106 CFU/ml.
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FIG. 1. Sensitivity test to detect C. jejuni subsp. jejuni LMG8841T and C. coli JCM2529T by using a real-time turbidimeter and visual assessment. The curves from left to right in panels a and b indicate decreasing concentrations of bacterial DNA (790 to 0.79 CFU per test tube in panel a and 380 to 0.38 CFU per test tube in panel b). (a) Detection of C. jejuni; (b) detection of C. coli; (c) visual detection of C. jejuni and C. coli by observation of turbidity. Tube 1, third sample containing 790 CFU for C. jejuni; tube 2, third sample containing 7.9 CFU for C. jejuni; tube 3, third sample containing 0.8 CFU for C. jejuni; tube 4, negative control; tube 5, third sample containing 380 CFU for C. coli; tube 6, third sample containing 3.8 CFU for C. coli; tube 7, third sample containing 0.4 CFU for C. coli; tube 8, negative control.
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Isolation and identification of C. jejuni-C. coli from Preston enrichment samples using the bacterial culture test required more than 4 days. In contrast, the LAMP assay was markedly faster, requiring less than 90 min from the beginning of DNA extraction to final detection and differentiation of C. jejuni and C. coli. In total, the LAMP assay required 23.5 to 25.5 h from the beginning of the enrichment culture to final determination.
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ISO has described a horizontal method for the detection of thermotolerant Campylobacter in food and animal feedstuffs (15). This method uses Bolton enrichment broth, starting with incubation at 37°C for 4 to 6 h and followed by incubation at 41.5°C for another 40 to 48 h. Plating is on mCCDA agar and on blood-based selective medium as a second choice (15). A Bolton enrichment culture requires a long incubation period (1 day), and therefore, in the present study, we used Preston enrichment cultures to obtain the LAMP results within 1 day. In addition, to decrease the cost of broths and to enable rapid and simultaneous testing of a large number of samples, we used 18 ml Preston enrichment broth instead of 225 ml Bolton enrichment broth.
As shown in Table 3, the sensitivities of both Butzler and mCCDA agars suggest that use of a single selective medium is not sufficient to obtain a real positive value for C. jejuni-C. coli in Preston enrichment culture, and ISO recommends the use of two selective media. Further, it was reported previously that the growth of certain C. jejuni and C. coli strains was inhibited on these selective media supplemented with selective ingredients and that there was overgrowth of the background flora of chickens (3, 5, 22, 23); therefore, studies to compare C. jejuni-C. coli isolation using combinations of various enrichment broths and selective media have been performed to obtain the best detection value (1, 2).
Butzler agar is known for its remarkable inhibition of the growth of background flora in chicken meat, as well as of certain C. coli strains (5, 9). As shown in Table 3, five C. coli-positive chicken samples were detected using mCCDA agar, whereas only two samples were detected using Butzler agar, which suggests that Butzler agar inhibits specific C. coli strains. Although mCCDA agar appears to be suitable for C. coli detection, the results showed that the detection value was lower than that with Butzler agar due to the observed overgrowth of the background flora. This result is due to the difference in the selective ingredients of mCCDA and Butzler agars, which include amphotericin B and cefoperazone, whereas the selective ingredients of Butzler agar also include bacitracin, cephazolin, colistin, cycloheximide, and novobiocin (5). These findings suggest that compared to mCCDA agar, Butzler agar has a stronger inhibitory effect on a wide range of background organisms in chicken meat samples and also yields a higher detection value. Further, supplemental use of mCCDA agar appears to facilitate accurate detection of C. jejuni and C. coli in samples.
The amplified LAMP products of the two LAMP-positive, culture-negative samples analyzed by agarose gel electrophoresis showed ladder patterns unique to the LAMP assay (25) (data not shown). Therefore, instead of being caused by a false positive in the LAMP assay, this discrepancy may have been due to a false negative in the culture assay caused by overgrowth on Butzler and mCCDA agars of the normal flora that was present in the chicken samples (5, 9, 29) or was stressed enough that it resisted conventional culture in standard conditions (29). Studies have shown that a number of food components inhibit DNA amplification in LAMP and PCR assays (10, 24). One typical Campylobacter-like colony from the one LAMP-negative, culture-positive chicken thigh sample was confirmed to be C. jejuni by conventional culture and LAMP assays. Therefore, instead of being caused by a false positive in the culture assay, the discrepancy in this single sample may have been due to a false negative in the LAMP assay caused by inhibition of DNA amplification by components found in the chicken thigh sample. Further work is needed to confirm this hypothesis.
As shown in Table 3, the three C. coli and two C. jejuni culture-positive samples were both C. jejuni and C. coli LAMP positive. The sensitivity test with mixtures containing different ratios of C. jejuni and C. coli indicates that this result is due to the small number of subcultures found in the selective agar (n = 3). Further, the five chicken samples were suspected of mixed contamination with both C. jejuni and C. coli, which is potentially revealed using our assay without a requirement for tedious subculture.
Of the 68 culture-positive samples, 3 (2 C. jejuni and 1 C. coli) and 2 (2 C. coli) produced one and two typical Campylobacter-like colonies, respectively, on the two selective media. Two microliters of concentrated template DNA used for the LAMP assay corresponds to approximately 37 µl Preston enrichment culture, and approximately 10 µl of Preston enrichment culture streaked onto each medium corresponds to approximately 3.7 to 7.4 CFU DNA per LAMP reaction test tube for the five samples. The results show that the sensitivities of the LAMP assay for C. jejuni and C. coli were 3.9 to 7.9 CFU and 1.9 to 3.8 CFU per test tube, respectively, which is a sufficient detection level for the five samples.
In the preliminary study, the discrepancy in the results was possibly due to the small number of C. jejuni-C. coli cells in the enrichment culture in previous studies, which was not sufficient for LAMP detection. Given this finding, we used centrifugation to concentrate C. jejuni and C. coli in the enrichment broth. A study by Furuhata et al. (8), which compared a conventional culture method with a commercial LAMP assay kit for the detection of C. jejuni-C. coli, reported sensitivity, specificity, and positive and negative predictive values for the LAMP assay of 96.0% (24/25), 90.8% (99/109), 70.6% (24/34), and 99.0% (99/100), respectively. The correlation between these values and those obtained with conventional culture methods, however, appeared to be insufficient. Further, the LAMP assay kit is unable to differentiate C. jejuni and C. coli, and the primer set sequences are not publicly accessible. Therefore, in the present study, we used published LAMP primer sets for C. jejuni and C. coli, which were developed in our previous study (32).
C. jejuni-C. coli contamination in chicken meat is one of the most important public health hazards (20, 29, 31). The frequent worldwide outbreaks caused by C. jejuni-C. coli highlight the need to control these contaminants in chicken meat. Here, we successfully established a rapid and sensitive assay for detection of C. jejuni and C. coli in naturally contaminated chicken meat samples using a combination of modified DNA extraction procedures and a LAMP assay, while the accuracy of the results was maintained. The LAMP assay is a rapid, sensitive, and practical method that is able to differentiate between these contaminants and may potentially facilitate surveillance for C. jejuni-C. coli contamination in chicken meat, screening of contaminated chicken meat samples before they are consumed, and investigations seeking to determine the causative agents of food poisoning.
Published ahead of print on 9 January 2009. ![]()
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