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Applied and Environmental Microbiology, March 2009, p. 1621-1627, Vol. 75, No. 6
0099-2240/09/$08.00+0 doi:10.1128/AEM.02154-08
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Institute for Food Safety and Hygiene, Vetsuisse Faculty University of Zurich, CH-8057 Zurich, Switzerland,1 Institute of Food Science and Nutrition, ETH Zurich, CH-8092 Zurich, Switzerland2
Received 17 September 2008/ Accepted 6 January 2009
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The cold shock protein (Csp) family consists of small, highly conserved, and structurally related nucleic acid binding proteins that presumably have important roles in regulation of various microbial physiological processes (8). These proteins are widely distributed among prokaryotes, including L. monocytogenes, and are often encoded through differentially regulated multiple gene families per organism (16, 29, 38). Csps are thought to serve as nucleic acid chaperones that bind RNA and DNA and thus may facilitate the control of processes such as replication, transcription, and translation within bacterial cells (8). To date, the multiple-homolog nature and functional variability of Csps are mostly derived from studies conducted with Escherichia coli and Bacillus subtilis. Nine Csps (CspA to CspI) are found in E. coli, and five (CspA, CspB, CspE, CspG, and CspI) have been linked to modulation of cold adaptation functions (12, 23, 26, 38). The CspC and CspE proteins have been implicated in chromosomal condensation and cell division and in the regulation of RpoS and UspA stress response proteins (2, 17, 19, 30, 43). Furthermore, the CspD protein of this organism has been suggested to regulate nutrient and stationary-phase stress adaptation responses (42). In B. subtilis, three Csps (CspA, CspB, and CspD) have been described and have been associated with regulation of both normal growth and cold and stationary-phase stress adaptation responses (14, 39). There is, however, limited knowledge regarding the function of Csps found in various psychrotolerant food-borne pathogens (25, 27, 40). An improved understanding of the role of these proteins in the normal growth and stress adaptation of L. monocytogenes is of particular interest, given the challenges that these organisms pose to food safety. Three Csp family proteins (CspA, CspB, and CspD) are found within the sequenced genomes of L. monocytogenes, but their functions are not yet understood (11). The present study was therefore conducted to gain further insights into Csp involvement in the normal growth and stress adaptation responses of this bacterium. To achieve this, csp gene expression patterns and the growth phenotypes of csp gene family deletion mutants were evaluated in response to optimal temperature (37°C), cold stress (4 and 10°C), and elevated NaCl salt concentration conditions.
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TABLE 1. Bacterial strains and plasmids
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cspA,
cspB, and
cspD constructs were created by PCR amplification of EGD-e DNA templates by using the various SOE primers listed in Table 2. The SOE PCR products were, thereafter, cloned into the pKSV7 plasmid by using the incorporated restriction enzyme sites. The pKSV7-
cspA, pKSV7-
cspB, and pKSV7-
cspD plasmid constructs were confirmed by DNA sequencing. The deletion of the targeted genes through homologous recombination and allelic exchange was facilitated by following previously described protocols with some modifications (4). Briefly, L. monocytogenes cells were transformed with the plasmid DNA constructs as previously described (28). Transformants were selected on LB plates in the presence of chloramphenicol (10 µg/ml) after 48 to 72 h of incubation at 30°C. Integration mutants were enriched for 3 to 6 generations at 42°C in 10 ml BHI broth plus chloramphenicol (10 µg/ml). The integrated strains were grown on BHI agar plates in the presence of chloramphenicol (10 µg/ml) for 24 to 48 h at 42°C. Colonies of integrants were confirmed after colony PCR analysis with a primer combination that bound to defined regions in the pKSV7 plasmid and EGD-e genomic DNA. Plasmid excision was facilitated through growth of the integrants in BHI broth for 3 to 50 generations. During this period, samples were drawn at every third generation and plated onto BHI agar plates. The colonies were thereafter plated onto BHI plates with and without antibiotic to identify chloramphenicol-sensitive colonies in which the plasmid had been excised. PCR analysis and subsequent DNA sequencing of the targeted regions confirmed deletion mutants. The
cspA,
cspB, and
cspD single-deletion mutant strains were generated initially. These strains were subsequently used in a second round of mutagenesis to target a second csp gene to create the
cspAB,
cspAD, and
cspBD double-deletion mutants. Finally, the cspA gene was targeted in the
cspBD strain, generating the
cspABD triple-deletion mutant strain. Defective phenotypes of
cspA and
cspD strains were complemented using a pPL2 plasmid-based system as described previously (21). DNA fragments consisting of the complete cspA and cspD genes, as well as their entire upstream sequence between them and the preceding gene, were amplified from the EGD-e DNA templates and subsequently cloned between the PstI and SmaI restriction sites of the pPL2 vector to create the pPL2-cspA and pPL2-cspD complementation plasmids. Upstream sequences included the predicted promoter elements and ribosome binding sites preceding these two genes. These constructs were confirmed by DNA sequencing and were subsequently used to transform the
cspA and
cspD strains, respectively. Colonies of transformants obtained on LB agar plates in the presence of chloramphenicol (10 µg/ml) were analyzed for proper integration of pPL2-cspA and pPL2-cspD constructs into the PSA prophage integration site by PCR analysis using the previously described NC16/PL95 primer set (21). |
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TABLE 2. Oligonucleotide primers used in this studyf
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Cold and NaCl stress adaptation experiments.
For cold stress exposure, 10-ml BHI stationary-phase cultures of the wild-type EGD-e strain were prepared by overnight growth at 37°C. The stationary-phase cultures were centrifuged (4,000 x g for 5 min), and the pellets were resuspended in 10 ml fresh BHI and divided into two 5-ml aliquots, which were habituated to 4°C and 37°C by 2 h of incubation. Thereafter, 1.5-ml samples were drawn, and total RNA templates were isolated as outlined below. For NaCl stress exposure, stationary-phase inocula, prepared as described above, were used to inoculate 10 ml of BHI or BHI plus 3% NaCl at 103 CFU/ml. These cultures were then incubated without shaking at 37°C for 10 (BHI) and 15 (BHI-NaCl) h to reach the late log phase, which was confirmed by colony counting in each case. At this point, 1.5-ml aliquots were drawn and directly processed for total RNA as outlined below or frozen at –20°C until processed at a later date.
Total RNA extraction.
The RNA extraction procedure that was employed combined rapid mechanical lysis and column-based RNA purification. The 1.5-ml aliquots from each culture were centrifuged at 4°C (cold-adapted cells) or room temperature (non-cold-adapted cells) for 5 min at 4,000 x g. The supernatants were discarded, and pellets were resuspended in 0.5 ml lysis buffer provided in the RNeasy plus minikit (Qiagen). The mixtures were transferred onto the lysing bead matrix in MagNA lyser tubes (Roche Molecular Diagnostics GmbH, Penzburg, Germany). Bacterial cells were mechanically disrupted using the MagNA lyser instrument (6,500 rpm for 60 s). Total RNA was purified from the lysates on RNA binding columns according to the RNeasy plus minikit protocol and included two DNA removal steps. The cell lysates were passed through a genomic DNA removal column, and an on-column DNase I digestion step was performed. Total RNA was eluted using 30 µl of RNase-free water, and the yield was determined by measuring absorption at 260 nm using the Nanodrop ND1000 (Nanodrop Instruments, DE). RNA template integrity was further analyzed under UV light after denaturing agarose gel electrophoresis and ethidium bromide staining.
Reverse transcription.
Reverse transcription (RT) was performed using the Quantitect RT kit (Qiagen). Three hundred nanograms of total RNA from each sample were converted into cDNA in 20-µl reaction mixtures. Similar amounts of total RNA from each sample were also subjected to the cDNA synthesis reaction without the inclusion of the reverse transcriptase enzyme as controls. These were subsequently used as "minus RT" controls to assess potential residual DNA contamination in total RNA templates.
Real-time PCR and quantification of gene expression.
Primers used in this study are listed in Table 2. The real-time PCRs were performed in the LightCycler 480 instrument (Roche Molecular Diagnostics, Rotkreuz, Switzerland). The reactions were performed in a final reaction volume of 10 µl: 2.5 µl (3.75 ng) cDNA (1:10 dilution of cDNA generated as described above); 2.5 µl (0.4 µM) of gene-specific forward and reverse primer mix; 5 µl of 2x LightCycler 480 SYBR green I master mix. The real-time PCR run protocol was comprised of preincubation (4 min at 95°C), 40 amplification cycles (10 s at 95°C; 20 s at 56°C; 20 s at 72°C; 5 s at 80°C with a single fluorescent measurement); and melting curve (65 to 97°C at 2.2°C/s plus continuous fluorescent measurement). Primers and reaction conditions were optimized for specificity and target amplification, with efficiencies of 90 to 100%. Transcript levels were determined using the LightCycler 480 relative quantification software (Roche Molecular Diagnostics). Initially a reference gene validation under the different experimental conditions was performed as previously described (37), and the 16S rRNA transcripts were established as the most suitable internal control reference gene for relative mRNA quantification in our study. Based on this, we quantified csp gene transcripts relative to the 16S rRNA transcript level of the same sample.
Statistical analysis.
Statistical analysis was performed using the Stat View 4.02 (Abacus Concepts Inc., Berkeley, CA) program. The bacterial colony counts were converted into log CFU/ml followed by calculation of the means and standard deviations. The statistical significances of differences in the bacterial colony counts between the wild type and the csp mutants were evaluated using one-way analysis of variance at a significance level (
) of 0.05. The comparative data derived from quantitative gene expression analysis were analyzed using Student's t test, and differences with P values of <0.05 were considered to be statistically significant.
Bioinformatics.
The Vector NTI Advance 10.3 program (Invitrogen) was used for DNA and protein sequence manipulations. Protein motif search and hairpin predictions were performed using the DNASIS MaxVersion 2.6 (Miraibio, San Francisco, CA). Sequence homologies and protein sequence alignments were investigated using the BLASTn and BLASTp (NCBI) programs and multiple sequence alignment with hierarchical clustering (7).
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TABLE 3. Amino acid sequence comparison matrix of L. monocytogenes Csps, E. coli CspA, and B. subtilis CspBa
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FIG. 1. Amino acid sequence alignment of L. monocytogenes Csps (CspALm, CspBLm, and CspDLm) and the E. coli (CspAEc) and B. subtilis (CspBBs) homologs. The sequences were aligned using the program for multiple sequence alignment with hierarchical clustering (6). Dots represent identical amino acids in all five Csp homologs, and dashes represent the gaps placed in the sequences by the alignment program to optimize the alignment. The highly conserved nucleic acid binding motifs (RNP-1 and RNP-2) of cold shock domain proteins are highlighted in bold and underlined.
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TABLE 4. Relative csp gene expression induction of cold stress-adapted stationary-phase EGD-e cells
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TABLE 5. Relative csp gene expression induction of BHI-NaCl stress-adapted log phase EGD-e cells
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cspA and
cspD strains was accomplished using pPL2-cspA and pPL2-cspD plasmid constructs. This process restored deleted cspA and cspD genes by integration into the PSA prophage attB site of the L. monocytogenes EGD-e chromosome in respective mutant strains.
Csps are required for efficient L. monocytogenes growth under cold stress.
The growth kinetics of the wild type and the various cspA deletion mutant strains are summarized in Table 6. Representative growth curves depicting the growth of the wild type and selected cspA deletion mutants are presented in Fig. 2. As shown, an individual cspA, cspB or cspD gene deletion resulted in no detectable growth phenotype differences from the parent wild-type strain at 37°C in rich (BHI) and minimal (DM) nutrient conditions (Fig. 2A and B). Similarly, double deletions as well as triple deletions of all known csp genes produced no detectable growth phenotype defects at 37°C, as summarized by Table 6. Meanwhile, the growth analysis at 4°C showed that cspB deletion also had no influence, while deletion of cspA or cspD impairs L. monocytogenes growth under cold stress (Fig. 2C and D). In fact, the
cspA strain completely failed to grow at 4°C and 10°C in BHI and DM. In support of a causal link, the cold growth phenotype of the
cspA strain was successfully restored by a pPL2-cspA complementation (Fig. 2E). The cold growth phenotype in the
cspD strain was only significantly poor (P < 0.05) compared to that of the wild type at 4°C, but not at 10°C (Fig. 2C and D and Table 6). The cold-sensitive phenotype of this mutant was primarily observed with the defined minimal nutrient conditions of DM. But it was less pronounced within the rich complex nutrient background in BHI (Fig. 2C and D). Similarly, growth analysis of double (
cspAB,
cspAD, and
cspBD) and triple (
cspABD) Csp deletion strains further confirmed that a cspA or cspD gene deletion compromises the cold growth phenotypes of L. monocytogenes EGD-e (Table 6), while cspB gene functions seemed dispensable as long as the cspA and cspD genes were retained in this bacterium. This hypothesis was confirmed by cold growth analysis of a
cspDB mutant strain in DM at 4°C (Fig. 2F). As shown, growth in this mutant strain is further compromised by cspB deletion, compared to growth of the
cspD or
cspB strain (Fig. 2F). Thus, loss of cspB gene functions, combined with a cspD deletion, also leads to impaired cold growth of EGD-e cells, suggesting some minimal CspB protein contribution to cold adaptation functions of this organism.
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TABLE 6. Overview of csp gene deletion mutant growth phenotypes at 37, 10, and 4°C
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FIG. 2. Growth of wild-type EGD-e and various csp gene family deletion mutants of this strain. (A to D) Growth kinetics of the wild-type, cspA, cspB, and cspD strains in BHI and DM at optimal (37°C) and cold stress (4°C) temperatures. (E) Growth of wild-type, cspA, and pPL2-cspA-complemented cspA strains at 10°C in BHI. (F) Growth kinetics of cspB, cspD, and cspBD at 4°C in DM. The results represent the means (± standard deviations) from duplicates of three independent experimental runs.
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cspD in DMS was significantly slower than that of the wild-type strain. This was despite the fact that both strains grew similarly in regular DM (Fig. 2B). Phenotypic defects of
cspD growth in DMS were partly restored through pPL2-cspD-based genetic complementation (Fig. 3A). On the other hand, individual cspA and cspB gene deletions did not influence EGD-e growth phenotypes in DMS (Fig. 3B and Table 7). A double deletion of these two genes, however, significantly reduced growth in DMS (Fig. 3B). The loss of cspD gene function in cspA/D (
cspAD) and cspB/D (
cspBD) double-deletion mutants was also confirmed to impair growth phenotypes of EGD-e under NaCl stress conditions of DMS (Table 7). A cspA/B/D triple-deletion mutant also leads to complete growth failure of EGD-e cells in DMS, indicating that at least one Csp must be retained for L. monocytogenes growth at high NaCl salt concentrations.
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FIG. 3. Growth of the wild-type EGD-e and various csp gene family deletion mutants under NaCl stress in DMS. Growth kinetics in DMS of wild-type, cspD, and pPL2-cspD-complemented cspD strains (A) and wild-type, cspA, cspB, and cspAB strains (B). The results are means (± standard deviations) from duplicates of three independent experimental runs.
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TABLE 7. Overview of Csp deletion mutant growth phenotypes in DM and DMS1
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The potential role of Csps in osmotic stress adaptation so far stems from the fact that expression of the cspC gene in Bordetella bronchiseptica is significantly induced following exposure of this organism to 2 M NaCl (34). We show here that direct growth of L. monocytogenes EGD-e under NaCl stress in BHI-NaCl leads to significant induction of cspA and cspD gene expression, although the overall NaCl stress-associated csp inductions appeared lower compared to those in cold-adapted cells. The induction trend observed of cspD>cspA was consistent with the subsequent trend observed in the stress sensitivity (
cspD>
cspA or
cspB) of the csp gene deletion mutants. In fact, a single deletion of cspA or cspB gave no discernable NaCl stress growth phenotypes in DMS cultures. The
cspAB double-deletion mutant was, however, also significantly impaired during growth under similar NaCl stress conditions. It also seems that at least one csp gene is required for L. monocytogenes growth at higher NaCl concentrations. A
cspABD triple-deletion mutant completely failed to grow under NaCl stress conditions in DMS cultures.
In this study, we have presented both gene expression and stress growth phenotypic evaluation data suggesting that L. monocytogenes Csps are functionally required for efficient cold and osmotic stress adaptation responses in this bacterium, although the precise nature of Csp involvement in such stress adaptation mechanisms still remains to be investigated. Key cold stress challenges include negatively supercoiled DNA and stabilized RNA secondary structures. These impair cellular replication, transcription, and translation processes. Therefore, increased Csp synthesis and activity at low temperatures provides DNA and RNA chaperone functions (8, 29), which are needed in cold-exposed L. monocytogenes cells to help resolve these nucleic acid structural hurdles. The Csp functional contributions to NaCl osmotic stress adaptation in L. monocytogenes are not yet clear. One possibility is that Csp chaperones might also promote the increased production of sodium ion extrusion transporter proteins through their effects in facilitating transcription and translation processes. This might enhance protection of L. monocytogenes cells from NaCl toxicity through increased extrusion of intracellular sodium ions. Alternatively, as observed in eukaryotic cells, high cellular NaCl concentration might lead to increased levels of cellular DNA damage in L. monocytogenes cells (20). It is thus plausible that Csps through their DNA chaperone activity facilitate repair of NaCl stress-damaged DNA and promote L. monocytogenes under NaCl-associated osmotic stress.
The fact that Csps seem to promote L. monocytogenes adaptation against both cold and NaCl stress also has significant implications in view of practical food microbial control measures. The combined or sequential exposure of L. monocytogenes cells to these two stresses in food environments might inadvertently induce cross-protection responses. Cold stress induced by low temperature may inadvertently cross-protect cells against NaCl stress due to induction of cspA, cspD, and cspB gene expression. Conversely, exposure to higher NaCl salt concentrations in some foods before cooling can also adapt cells to grow at low temperatures due to induction of cspA and cspD gene functions in response to NaCl stress. A similar phenomenon was recently described for the spoilage bacterium Shewanella putrefaciens (22) and for an lmo1078 gene transposon deletion mutant of L. monocytogenes (6). A mutant in this gene, which encodes a putative UDP-glucose phosphorylase enzyme, also exhibited cold and NaCl salt stress sensitivity.
Published ahead of print on 16 January 2009. ![]()
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