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Applied and Environmental Microbiology, April 2009, p. 2091-2098, Vol. 75, No. 7
0099-2240/09/$08.00+0 doi:10.1128/AEM.00166-09
Copyright © 2009, American Society for Microbiology. All Rights Reserved.

Division of Healthcare Quality Promotion, Centers for Disease Control and Prevention, Atlanta, Georgia,1 Division of Tuberculosis Elimination, Centers for Disease Control and Prevention, Atlanta, Georgia,2 National Health and Environmental Effects Research Laboratory, Office of Research and Development, United States Environmental Protection Agency, Research Triangle Park, North Carolina3
Received 23 January 2009/ Accepted 2 February 2009
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Although many studies have linked environmental mycobacteria to clinical isolates, NTM can be difficult to culture from the complex community found in most drinking water distribution systems (WDS) due to competition on media from many faster growing fungi and heterotrophic bacteria (7, 18, 25). In addition to linking infections to their source, quantification of environmental NTM will help to determine their ecological role in WDS biofilms, possibly leading to more-effective point-of-use treatment to prevent transmission to susceptible populations. For example, previous work has demonstrated a positive correlation between lower levels of assimilable organic carbon and the concentration of NTM in WDS biofilms (25, 30). In other work, clinical isolates of M. avium formed more biofilm when incubated in water than when incubated in Middlebrook 7H9 broth (4, 22). The presence of divalent cations and carbon in the water also increased biofilm production (4). Although laboratory studies help define parameters for NTM biofilm growth, little is known regarding environmental settings, such as the numbers of each species in multispecies biofilms, how often they are sloughed off into the water supply, and most importantly for human health, what their virulence is when they reach the user during bathing/showering, reprocessing of medical devices, or other exposures. Given that free-living mycobacteria are part of the water flora, it may ultimately be more relevant to determine the virulence of NTM reaching exposed individuals than to merely confirm their presence and numbers.
Some researchers have linked biofilm formation ability, glycopeptidolipid (GPL) production, and in some cases, microcolony morphology to virulence in NTM (19, 34). Yamazaki et al. (34) created mutants of M. avium that could not form as much biofilm as the wild type, and these mutants were also less infective than the wild type. The opposite was found for M. abscessus, where more-invasive strains formed less biofilm in a static laboratory model (19). The rough colony type of M. abscessus was associated with virulence more than the smooth colony type was, as tested in human monocyte and mice models. The rough phenotypes formed microscopic cording structures, while the smooth phenotype did not. GPL was expressed in smooth types but little in rough types. Rough types formed little biofilm compared to smooth types. The "hypervirulence" of a rough colony morphotype was also observed in another strain of M. abscessus (5), indicating that biofilm formation ability, biofilm structure, and virulence can be linked in at least some mycobacteria. The link between biofilm formation and structure has been examined previously in M. chelonae, M. fortuitum, and M. marinum (2, 14, 15, 16). M. marinum formed cords similar to that of the rough M. abscessus strains mentioned above (16).
The surfaces to which mycobacteria attach are likely determined, at least in part, by the hydrophobicity and mycolic acid composition of the organisms' cell walls. The environmental conditions and nutrients available inside pipes and other surfaces in health care environments also affect mycobacterial growth. In the health care setting, some important surface materials include the pipes comprising the WDS, shower fixtures, sink faucets, ice machines, and medical devices. Relevant materials include metals, such as stainless steel (SS) and copper, and plastics, such as polyvinyl chloride (PVC) and polycarbonate (PC). In a previous study, M. fortuitum developed more biofilm on SS, PVC, and PC than on copper or glass (32). Similar amounts of biomass were measured on PVC and PC. PC was chosen as a substrate for biofilm growth for this investigation, along with SS, because of their inclusion in many medical devices as materials that can be disinfected through steam autoclaving, the use of ethylene oxide, or irradiation.
Given the association between NTM infections and drinking water, clinical isolates of NTM would be expected to form biofilm in WDS. The goal of this study was to determine the effects of two substrate materials (SS and PC) and nutrient level (autoclaved municipal tap water and a microbiological culture medium) on the ability of NTM to form biofilms in a laboratory model. A second objective of this study was to evaluate biofilm structure to clarify the role that microcolony morphologies such as cord and pillar formation may play in the survival and maintenance of mycobacteria in WDS biofilms.
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TABLE 1. Clinical, environmental, and reference strains of NTM examined for biofilm formation ability
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(ii) Method for growth of biofilms.
Biofilms were developed on autoclaved SS or PC disks incubated in a 24-well tissue culture plate (Corning Incorporated, Corning, NY), with one disk per well. Each disk was covered with 1.5 ml of either sterile R2A broth (R2A medium without the agar) (26) or autoclaved PW. Suspensions of each isolate, collected from the surface of a Middlebrook 7H10 agar plate, were made in Middlebrook 7H9 broth; concentration was determined by measuring absorbance in a MicroScan turbidity meter (Dade Behring, Deerfield, IL). Suspended cells were diluted in 0.00425% monopotassium phosphate (Butterfield's buffer; Becton, Dickinson and Co.), and approximately 104 CFU were inoculated per well. Inoculation concentration was confirmed by enumerating CFU from a subsample on Middlebrook 7H10 agar. The well plates were incubated for 72 h at 35°C with gentle shaking on a rocker platform (setting 9, 15 rotations/min; Cole-Parmer, Vernon Hills, IL). At the end of the incubation time, disks were removed with sterile forceps, dipped three times with gentle up and down motions in a beaker containing phosphate-buffered saline (PBS) to remove loosely attached bacteria, and processed for either plate count enumeration or microscopy analysis. Disks destined for microscopic structural analysis were fixed in 4% formaldehyde and stored at 4°C until examined.
(iii) Biofilm quantification by viable plate counting.
After disks were rinsed in PBS, mycobacteria were enumerated by culturing on Middlebrook 7H10 agar. Disks were placed in 50-ml polypropylene centrifuge tubes containing 10 ml of PBS plus 0.1% Tween 80. Bacteria were removed from the disk surface with three cycles of sonication in a water bath sonicator (frequency of 42 kHz [±6%]; Branson Ultrasonics Corp., Danbury, CT) for 1 min, followed by vortexing (maximum setting) for 30 s. This bacterial suspension was diluted in 0.00425% monopotassium phosphate and spread on 7H10 agar. Plates were incubated at 35°C or 37°C for rapid growers or slow growers, respectively, until colonies were observed (3 to 5 days for rapid growers and 10 to 14 days for slow growers, typically). Removal efficiency was estimated by microscopic examination of 12 isolates grown in triplicate on each substrate under each nutrient condition. Percent coverage at the substrate level was calculated as described in "Microscopy and image analysis" below.
(iv) Biofilm measurement by microscopic methods.
Bacterial DNA within biofilms was stained with Sybr green I (Molecular Probes, Inc., Carlsbad, CA) for visualization of all bacteria attached to the SS or PC surface. Disks were removed from formaldehyde, dipped in PBS, and placed in a 5x solution of Sybr green I in room temperature Tris-EDTA buffer at pH 8 (10 mM Tris-1 mM EDTA; Mediatech, Inc., Manassas, VA). Staining was carried out for 10 min in the dark, followed by a 1-min rinse in sterile distilled water. Disks were air dried in the dark and mounted onto glass microscope slides with double-sided tape. Coverslips (22 mm2, with 1-mm thickness) were mounted onto the disks with ProLong Gold antifade mounting fluid (Molecular Probes, Inc.); the coverslips were taped down on either side of the disk to maintain stability.
(v) Microscopy and image analysis.
Biofilms were examined with a Zeiss Axioplan epifluorescence microscope equipped with a fluorescein filter set (480/40 nm excitation, 505-nm long-pass dichroic mirror, 535/50 nm emission) and an ApoTome, an attachment that reduces light scatter in fluorescing samples (Carl Zeiss, Inc., Thornwood, NY). Images were obtained through a 40x oil objective, a Zeiss AxioCam HRm digital camera, and AxioVision imaging software. For each microscope field (x-y plane) imaged, optical sections were obtained through the thickness of the biofilm (z), from the disk substratum to the top of the biofilm, in a Z-stack. At least five Z-stacks were sampled per disk, and three disks per isolate per condition were examined. To view a representative section of each disk, at least one image was obtained from the center, and the others were obtained from different quadrants of the disk. For measuring percent biofilm removal, 10 substratum images were obtained from each of three disks for 30 images total per nutrient level and surface material. All images were exported in gray-scale tagged image file format for analysis using COMSTAT software (17).
Image analysis was performed on each image stack with manual thresholding. Variables such as maximum thickness, biomass estimate, and percent coverage were calculated using COMSTAT. For percent coverage, the maximum percent coverage of each image stack was included, rather than that of the layer closest to the substratum. The exception to this was in calculating the efficiency of biofilm removal from disks. Percent coverage was measured at the substratum on disks after sonication/vortexing and compared to those of disks containing biofilm by subtracting percent coverage after biofilm removal from percent coverage of intact biofilm, dividing by percent coverage of intact biofilm, and multiplying by 100.
(vi) Statistical analysis.
Multiple comparisons of nutrient level and substrate material within each isolate were performed on image analysis data using the general linear model with the Bonferroni adjustment in SigmaStat (version 3.5; Systat Software Inc). Statistical comparisons of mycobacterial isolate biofilm growth detected by culturing were performed with SAS (version 9.1; SAS Institute Inc.). Significance was indicated if P values were <0.05.
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FIG. 1. Culturable biofilm of Mycobacterium clinical isolates and reference strains after growth for 3 days at 35°C in R2A medium (a) or PW (b) on PC or SS disks. Data were transformed by addition of 1 and converting values to log10 values. The detection limit was 100 CFU/disk or approximately 24 CFU/cm2 (n = 3). Strain identifiers are as follows: Mab23, M. abscessus ATCC 23007; MabBF6, M. abscessus BF6; Mab4AU, M. abscessus 4AU; Mch35, M. chelonae ATCC 35752; Mch34, M. chelonae 34; Mch56, M. chelonae 56; Mfo32, M. fortuitum 32; Mfo89, M. fortuitum 89; Msm19, M. smegmatis ATCC 19420; Mav91, M. avium 91; Mav61, M. avium EPA 61151; Mav26, M. avium EPA 88126; and Min44, M. intracellulare EPA 88144.
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Description of microcolonies observed by epifluorescence microscopy.
The largest biofilm structures were observed in samples grown in R2A on PC, displaying several microcolony morphologies (Fig. 2). For instance, M. abscessus ATCC 23007 formed large, diffuse microcolonies (Fig. 2A). In contrast, M. abscessus strains BF6 and 4AU and M. chelonae ATCC 35752 formed cord structures in R2A on PC and, to a lesser extent, on SS. M. abscessus BF6 also formed cords occasionally in PW on SS. Examples of cording structure are shown in Fig. 2B and C. M. fortuitum strains 89 and 32 formed tall, narrower microcolonies, but M. fortuitum 32 also had curved, fingerlike projections that extended along the surface at the base of many structures (Fig. 2E). Other isolates formed moderate to very sparse biofilms, as represented by M. smegmatis ATCC 19420 and M. avium 91 in Fig. 2D and F, respectively. Although culturable M. smegmatis ATCC 19420 was not recovered from disks incubated in PW, small amounts of attached bacteria were observed directly (data not shown). For EPA strains M. avium EPA 88126 and M. intracellulare EPA 88144, it was necessary to scan much of each disk to find any evidence of cells or microcolonies. Image stacks of these two mycobacteria were not analyzed quantitatively.
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FIG. 2. Compiled biofilm images of six mycobacteria isolates grown in R2A medium on PC disks. Biofilm was stained with Sybr green I before image stacks were obtained. (A) M. abscessus ATCC 23007; (B) M. abscessus BF6; (C) M. chelonae ATCC 35752; (D) M. smegmatis ATCC 19420; (E) M. fortuitum 32; (F) M. avium 91.
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TABLE 2. Biomass estimation of 10 RGM and two M. avium isolatesa
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FIG. 3. Maximum biofilm thickness of 10 RGM and two M. avium isolates incubated at two nutrient levels and on two substratum materials. Maximum thickness was significantly higher for all RGM grown on PC substratum (P < 0.05) in R2A (high-nutrient condition) than for those grown on PC in PW (low-nutrient condition). Substratum material was significant for all RGM grown in R2A, except for M. chelonae 56 and for M. avium isolates 91 and EPA 61151, at either nutrient level. Nutrient level did not significantly affect M. avium biofilm thickness (n = 15 for most isolates). Legend abbreviations for biofilm grown: R2A-PC, R2A broth on PC; R2A-SS, R2A broth on SS; PW-PC, PW on PC; PW-SS, PW on SS. Strain identifiers on the x axis are defined in the legend to Fig. 1.
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TABLE 3. Maximum percent coverage of biofilm in the x-y plane of each image stack
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Biofilm removal efficiency was estimated for 12 isolates grown in triplicate on each substrate and under each nutrient condition by comparing the percent coverage at the substrate level after sonication/vortexing to the percent coverage of intact biofilm. The majority of isolates under each nutrient level and substratum demonstrated >95% biofilm removal efficiency, and all but four calculations were above 90%. Categorized by growth condition, isolates incubated in R2A on PC produced a removal efficiency ranging from 100% (99.95%) for M. abscessus ATCC 23007 to 90.0% for M. chelonae ATCC 35752; in R2A on SS, the efficiency ranged from 99.6% for M. abscessus ATCC 23007 to 83.4% for M. smegmatis ATCC 19420; in PW on PC, the efficiency ranged from 99.9% for M. chelonae 99 to 90.1% for M. abscessus 4AU; and in PW on SS, the recovery efficiency ranged from 99.6% for M. fortuitum 32 to 74.6% for M. chelonae 56.
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Temperature may be an important factor in determining mycobacterial growth in PW biofilms (29). Although the recommended optimal incubation temperature for cultivation of most RGM is 28 to 30°C (13), all of the isolates included in this study are capable of growth in most of the temperature ranges found in interior plumbing, including the incubation temperature of 35°C used during this study.
Previous research has demonstrated a link between mycobacterial virulence and cord-forming ability (19). In that study, virulent M. abscessus strains formed cord structures, produced less biofilm, and produced less GPL than a nonvirulent strain. The three M. abscessus isolates examined in the current study all formed biofilm in each nutrient level on both surface materials. The numbers of culturable biofilm bacteria were equivalent or higher in the rough, cording, clinical isolates than in the smooth, noncording isolate. By contrast, quantitative analysis of biofilm structure by biomass estimation and maximum percent coverage demonstrated that the smooth M. abscessus 23007 produced more biofilm than the cord-forming M. abscessus BF6. This suggests that the cording formations are more compact, containing more cells per unit volume than the more-diffuse biofilm formed by smooth M. abscessus. These results suggest that in at least some cord-forming M. abscessus isolates, biofilm formation ability cannot be predicted by colony morphology. This indicates that the relationship among cording, biofilm formation, and virulence is not completely characterized. To understand these relationships more fully, a larger sampling of M. abscessus strains and other cord-forming species should be examined. Additionally, more-complete analysis of components necessary for biofilm formation in NTM is required.
Biomass and other image analysis measurement parameters may differ from culturable bacteria numbers for several reasons. Biofilm was imaged after staining with Sybr green I, a "total" stain of double-stranded DNA that does not indicate cell viability. It is possible that some attached mycobacteria did not maintain viability on PC or SS during the 3-day incubation. Another possibility is that during removal of mycobacteria from disks for culturing, some biofilm remained clumped, even after vortexing and sonication, so that the number of culturable bacteria could have been underestimated. However, the low variance in CFU per isolate demonstrates that separation of mycobacteria during sample processing was consistent, if not 100% complete. Also, cell size may vary among species, strains, or even within a strain grown under different conditions. When measuring small microcolonies, as is the case for many of the mycobacteria grown in PW, a small difference in individual cell size and shape will greatly influence the microcolony dimensions. Although extracellular material was not visualized or quantified in this investigation, its presence could also affect biofilm structure.
Under low-nutrient conditions in PW, the low growth numbers and microcolony formation were at the lower limit of what may be considered biofilm versus attached cells. While culturable numbers of bacteria recovered from disk surfaces were high enough to indicate biofilm growth in PW for some isolates, particularly for MAC, direct observation of biofilms often demonstrated the presence of single cells or very small clusters of bacteria. This limited the use of image analysis under these conditions, since complex biofilm structure was absent. This may be due to the short incubation time for biofilm development in this experiment, so that young biofilm was observed rather than mature, complex biofilm. This was demonstrated in a comparison of percent surface coverage and maximum percent coverage to determine if structure in the x-y plane differed between the substratum level and elsewhere in the biofilm. The high correlation between the two measurements indicated either that the maximum percent coverage occurred at the substratum level, as seen in some samples (data not shown), or that similar percent coverage existed throughout the height of the biofilm. This corresponds to the simple microcolony structure observed for many of the mycobacteria, particularly under low-nutrient incubation.
Generally, more variability was observed in direct measurements than in plate counts, suggesting that more observations per sample are required to make direct observation consistent. This would be possible if a completely automated imaging system could be employed.
M. smegmatis, frequently chosen as a model organism for biofilm research (24, 27), may not be the ideal Mycobacterium species model for the study of biofilm formation in PW, since no culturable M. smegmatis was recovered in PW biofilms incubated under the conditions in this study.
All mycobacterial clinical isolates formed biofilm under high- and low-nutrient conditions. Nutrient level was a more important factor than the two substrate materials tested for microcolony formation by RGM in this study. Although other studies have demonstrated a difference in biofilm formation ability between cord- and non-cord-forming M. abscessus strains, the three M. abscessus isolates included in this study formed roughly equivalent amounts of culturable biofilm, despite the measurable differences in microcolony morphology. Additional study of M. abscessus cording ability and pathogenicity, as well as its ecology in PW supplies, may lead to a better understanding of the role played by M. abscessus in health care-related infections. When most measurements are considered, nutrient level did not significantly affect MAC biofilm development. This study indicated that M. avium is better equipped to grow in warm PW supplies than RGM is, offering an explanation for the greater occurrence of disease caused by MAC.
Published ahead of print on 6 February 2009. ![]()
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