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Appl Environ Microbiol, July 1998, p. 2513-2519, Vol. 64, No. 7
Department of Biological Science and
Technology,
Received 22 January 1998/Accepted 16 April 1998
The xyl operon of a gram-positive bacterium,
Tetragenococcus halophila (previously called
Pediococcus halophilus), was cloned and sequenced. The DNA
was about 7.7 kb long and contained genes for a ribose binding protein
and part of a ribose transporter, xylR (a putative
regulatory gene), and the xyl operon, along with its
regulatory region and transcription termination signal, in this order.
The DNA was AT rich, the GC content being 35.8%, consistent with the
GC content of this gram-positive bacterium. The xyl operon consisted of three genes, xylA, encoding a xylose
isomerase, xylB, encoding a xylulose kinase, and
xylE, encoding a xylose transporter, with predicted
molecular weights of 49,400, 56,400, and 51,600, respectively. The
deduced amino acid sequences of the XylR, XylA, XylB, and XylE proteins
were similar to those of the corresponding proteins in other
gram-positive and -negative bacteria, the similarities being 37 to
64%. Each polypeptide of XylB and XylE was expressed functionally in
Escherichia coli. XylE transported D-xylose in a sodium ion-dependent manner, suggesting that it is the first described xylose/Na+ symporter. The XylR protein contained
a consensus sequence for binding catabolites of glucose, such as
glucose-6-phosphate, which has been discovered in glucose and fructose
kinases in bacteria. Correspondingly, the regulatory region of this
operon contained a putative binding site of XylR with a palindromic
structure. Furthermore, it contained a consensus sequence, CRE
(catabolite-responsive element), for binding CcpA (catabolite control
protein A). We speculate that the transcriptional regulation of this
operon resembles the regulation of catabolite-repressible operons such
as the amy, lev, xyl, and
gnt operons in various gram-positive bacteria. We discuss
the significance of the regulation of gene expression of this operon in
T. halophila.
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
Sequencing and Characterization of the xyl Operon of a
Gram-Positive Bacterium, Tetragenococcus halophila
*
Corresponding author. Mailing address: Department of
Biological Science and Technology, Science University of Tokyo, 2641 Yamazaki, Noda-shi, Chiba 278, Japan. Phone: 81-471-24-1501, ext. 4405. Fax: 81-471-25-1841. E-mail:
yamato{at}yl05hp.tb.noda.sut.ac.jp.
Appl Environ Microbiol, July 1998, p. 2513-2519, Vol. 64, No. 7
0099-2240/98/$04.00+0
Copyright © 1998, American Society for Microbiology. All rights reserved.
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