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Applied and Environmental Microbiology, August 1999, p. 3534-3539, Vol. 65, No. 8
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.

Genomic Characterization of Human and Environmental Polioviruses Isolated in Albania

Maurizio Divizia,1,* Leonardo Palombi,1 Ersilia Buonomo,1 Domenica Donia,1 Vito Ruscio,1 Michele Equestre,2 Luljeta Leno,3 Augusto Panà,1 and Anna Marta Degener4

Faculty of Medicine, Department of Public Health, University of Tor Vergata,1 Department of Cellular and Developmental Biology, University of La Sapienza,4 and Laboratory of Virology, High Institute of Public Health,2 Rome, Italy, and Institute of Public Health, Tirana, Albania3

Received 1 March 1999/Accepted 19 May 1999

Between April and December 1996, a serious outbreak of poliomyelitis occurred in Albania; almost 140 subjects were involved, and the episode presented an unusually high mortality rate (12%). During the outbreak, water samples from the Lana River in Tirana, Albania, and stool samples from two cases of paralytic poliomyelitis were collected and analyzed for the presence of polioviruses. Six polioviruses were isolated from the environmental and human samples, according to standard methods. All the samples were characterized by partial genomic sequencing of 330 bases across the 5' untranslated region (5'-UTR) (nucleotide positions 200 to 530) and of 300 bases across the VP1 region (nucleotide positions 2474 to 2774). Comparison of these sequences with those present in data banks permitted the identification of environmental isolates Lana A and Lana B as, respectively, a Sabin-like type 2 poliovirus and an intertypic recombinant poliovirus (Sabin-like type 2/wild type 1), both bearing a G instead of an A at nucleotide position 481. The two other environmental polioviruses were similar to the isolates from the paralytic cases. They were characterized by a peculiar 5'-UTR and by a VP1 region showing 98% homology with the Albanian epidemic type 1 isolates reported by other authors. This study confirms the environmental circulation in Albania of recombinant poliovirus strains, likely sustained by a massive vaccination effort and by the presence in the environment of a type 1 poliovirus, as isolated from the Lana River in Tirana about 2 months before the first case of symptomatic acute flaccid paralysis was reported in this town.


* Corresponding author. Mailing address: University of Tor Vergata, Faculty of Medicine, Department of Public Health, Chair of Hygiene, Via di Tor Vergata, 135, 00133 Rome, Italy. Phone: 39/06/72596119. Fax: 39/06/2025285. E-mail: divizia{at}med.uniroma2.it.


Applied and Environmental Microbiology, August 1999, p. 3534-3539, Vol. 65, No. 8
0099-2240/99/$04.00+0
Copyright © 1999, American Society for Microbiology. All rights reserved.



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