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Applied and Environmental Microbiology, September 2001, p. 4206-4214, Vol. 67, No. 9
Environmental Research
Division2 and Biological Sciences
Division,1 Argonne National Laboratory,
Argonne, Illinois 60439; Genencor International, Inc., Palo
Alto, California 943043; and Eastman
Chemical Company, Kingsport, Tennessee 376624
Received 26 February 2001/Accepted 27 June 2001
Total DNA of a population of uncultured organisms was extracted
from soil samples, and by using PCR methods, the genes encoding two
different 2,5-diketo-D-gluconic acid reductases
(DKGRs) were recovered. Degenerate PCR primers based on published
sequence information gave internal gene fragments homologous to known
DKGRs. Nested primers specific for the internal fragments were combined with random primers to amplify flanking gene fragments from the environmental DNA, and two hypothetical full-length genes were predicted from the combined sequences. Based on these predictions, specific primers were used to amplify the two complete genes in single
PCRs. These genes were cloned and expressed in Escherichia coli. The purified gene products catalyzed the reduction of
2,5-diketo-D-gluconic acid to 2-keto-L-gulonic
acid. Compared to previously described DKGRs isolated from
Corynebacterium spp., these environmental reductases
possessed some valuable properties. Both exhibited greater than
20-fold-higher
kcat/Km
values than those previously determined, primarily as a result of
better binding of substrate. The Km
values for the two new reductases were 57 and 67 µM, versus 2 and 13 mM for the Corynebacterium enzymes. Both environmental
DKGRs accepted NADH as well as NADPH as a cosubstrate; other DKGRs and
most related aldo-keto reductases use only NADPH. In addition, one of
the new reductases was more thermostable than known DKGRs.
0099-2240/01/$04.00+0 DOI: 10.1128/AEM.67.9.4206-4214.2001
Copyright © 2001, American Society for Microbiology. All rights reserved.
DNA from Uncultured Organisms as a Source of
2,5-Diketo-D-Gluconic Acid Reductases
and
*
Corresponding author. Mailing address: Argonne National
Laboratory, Bldg. 202/Rm. BE111, 9700 South Cass Ave., Argonne, IL 60439. Phone: (630) 252-7432. Fax: (630) 252-7709. E-mail:
donnelly{at}anl.gov.
Present address: NASA Ames Research Center, Moffett Field, CA 94035.
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