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Minireviews:

Alison Buchan, José M. González, and Mary Ann Moran

Overview of the Marine Roseobacter Lineage
Appl. Environ. Microbiol. 2005 71: 5665-5677. [Full Text] [PDF] [Supplemental material]  

Genetics and Molecular Biology:

Qungang Qi, Ming Hao, Wing-on Ng, Steven C. Slater, Susan R. Baszis, James D. Weiss, and Henry E. Valentin

Application of the Synechococcus nirA Promoter To Establish an Inducible Expression System for Engineering the Synechocystis Tocopherol Pathway
Appl. Environ. Microbiol. 2005 71: 5678-5684. [Abstract] [Full Text] [PDF]  

Jeri D. Barak, Lisa Gorski, Pejman Naraghi-Arani, and Amy O. Charkowski

Salmonella enterica Virulence Genes Are Required for Bacterial Attachment to Plant Tissue
Appl. Environ. Microbiol. 2005 71: 5685-5691. [Abstract] [Full Text] [PDF]  

M. Andrea Azcarate-Peril, Olivia McAuliffe, Eric Altermann, Sonja Lick, W. Michael Russell, and Todd R. Klaenhammer

Microarray Analysis of a Two-Component Regulatory System Involved in Acid Resistance and Proteolytic Activity in Lactobacillus acidophilus
Appl. Environ. Microbiol. 2005 71: 5794-5804. [Abstract] [Full Text] [PDF]  

Christopher J. Kristich, Dawn A. Manias, and Gary M. Dunny

Development of a Method for Markerless Genetic Exchange in Enterococcus faecalis and Its Use in Construction of a srtA Mutant
Appl. Environ. Microbiol. 2005 71: 5837-5849. [Abstract] [Full Text] [PDF]  

Corinna Stansen, Davin Uy, Stephane Delaunay, Lothar Eggeling, Jean-Louis Goergen, and Volker F. Wendisch

Characterization of a Corynebacterium glutamicum Lactate Utilization Operon Induced during Temperature-Triggered Glutamate Production
Appl. Environ. Microbiol. 2005 71: 5920-5928. [Abstract] [Full Text] [PDF] [Supplemental material]  

Efrén Ordóñez, Michal Letek, Noelia Valbuena, José A. Gil, and Luis M. Mateos

Analysis of Genes Involved in Arsenic Resistance in Corynebacterium glutamicum ATCC 13032
Appl. Environ. Microbiol. 2005 71: 6206-6215. [Abstract] [Full Text] [PDF] [Supplemental material]  

Yali Xu, Chiao-Ling Weng, Niju Narayanan, Ming-Yi Hsieh, William A. Anderson, Jeno M. Scharer, Murray Moo-Young, and C. Perry Chou

Chaperone-Mediated Folding and Maturation of the Penicillin Acylase Precursor in the Cytoplasm of Escherichia coli
Appl. Environ. Microbiol. 2005 71: 6247-6253. [Abstract] [Full Text] [PDF]  

Marco Ventura, Gerald F. Fitzgerald, and Douwe van Sinderen

Genetic and Transcriptional Organization of the clpC Locus in Bifidobacterium breve UCC 2003
Appl. Environ. Microbiol. 2005 71: 6282-6291. [Abstract] [Full Text] [PDF]  

Willem van Schaik, Marcel H. Zwietering, Willem M. de Vos, and Tjakko Abee

Deletion of the sigB Gene in Bacillus cereus ATCC 14579 Leads to Hydrogen Peroxide Hyperresistance
Appl. Environ. Microbiol. 2005 71: 6427-6430. [Abstract] [Full Text] [PDF]  

Methods:

Katsuharu Saito, Ryo Ohtomo, Yukari Kuga-Uetake, Toshihiro Aono, and Masanori Saito

Direct Labeling of Polyphosphate at the Ultrastructural Level in Saccharomyces cerevisiae by Using the Affinity of the Polyphosphate Binding Domain of Escherichia coli Exopolyphosphatase
Appl. Environ. Microbiol. 2005 71: 5692-5701. [Abstract] [Full Text] [PDF]  

Gitika Panicker and Asim K. Bej

Real-Time PCR Detection of Vibrio vulnificus in Oysters: Comparison of Oligonucleotide Primers and Probes Targeting vvhA
Appl. Environ. Microbiol. 2005 71: 5702-5709. [Abstract] [Full Text] [PDF]  

Josh D. Neufeld and William W. Mohn

Unexpectedly High Bacterial Diversity in Arctic Tundra Relative to Boreal Forest Soils, Revealed by Serial Analysis of Ribosomal Sequence Tags
Appl. Environ. Microbiol. 2005 71: 5710-5718. [Abstract] [Full Text] [PDF]  

Petra Wolffs, Börje Norling, Jeffrey Hoorfar, Mansel Griffiths, and Peter Rådström

Quantification of Campylobacter spp. in Chicken Rinse Samples by Using Flotation prior to Real-Time PCR
Appl. Environ. Microbiol. 2005 71: 5759-5764. [Abstract] [Full Text] [PDF]  

Brenda K. Schroeder, Brent L. House, Michael W. Mortimer, Svetlana N. Yurgel, Scott C. Maloney, Kristel L. Ward, and Michael L. Kahn

Development of a Functional Genomics Platform for Sinorhizobium meliloti: Construction of an ORFeome
Appl. Environ. Microbiol. 2005 71: 5858-5864. [Abstract] [Full Text] [PDF]  

Herbert J. Tobias, Millie P. Schafer, Maurice Pitesky, David P. Fergenson, Joanne Horn, Matthias Frank, and Eric E. Gard

Bioaerosol Mass Spectrometry for Rapid Detection of Individual Airborne Mycobacterium tuberculosis H37Ra Particles
Appl. Environ. Microbiol. 2005 71: 6086-6095. [Abstract] [Full Text] [PDF]  

Christopher B. Blackwood, Adam Oaks, and Jeffrey S. Buyer

Phylum- and Class-Specific PCR Primers for General Microbial Community Analysis
Appl. Environ. Microbiol. 2005 71: 6193-6198. [Abstract] [Full Text] [PDF]  

Gulnur Coskuner, Stuart J. Ballinger, Russell J. Davenport, Rheanne L. Pickering, Rosario Solera, Ian M. Head, and Thomas P. Curtis

Agreement between Theory and Measurement in Quantification of Ammonia-Oxidizing Bacteria
Appl. Environ. Microbiol. 2005 71: 6325-6334. [Abstract] [Full Text] [PDF]  

Viviana Corich, Alessandro Mattiazzi, Elisa Soldati, Angela Carraro, and Alessio Giacomini

Sau-PCR, a Novel Amplification Technique for Genetic Fingerprinting of Microorganisms
Appl. Environ. Microbiol. 2005 71: 6401-6406. [Abstract] [Full Text] [PDF] [Supplemental material]  

Wen-Tso Liu, Jer-Horng Wu, Emily Sze-Ying Li, and Ezrein Shah Selamat

Emission Characteristics of Fluorescent Labels with Respect to Temperature Changes and Subsequent Effects on DNA Microchip Studies
Appl. Environ. Microbiol. 2005 71: 6453-6457. [Abstract] [Full Text] [PDF]  

Microbial Ecology:

Christopher S. Bland, Jamie M. Ireland, Eduardo Lozano, Maria E. Alvarez, and Todd P. Primm

Mycobacterial Ecology of the Rio Grande
Appl. Environ. Microbiol. 2005 71: 5719-5727. [Abstract] [Full Text] [PDF]  

Yoko Nishimura, Chulgoo Kim, and Toshi Nagata

Vertical and Seasonal Variations of Bacterioplankton Subgroups with Different Nucleic Acid Contents: Possible Regulation by Phosphorus
Appl. Environ. Microbiol. 2005 71: 5828-5836. [Abstract] [Full Text] [PDF] [Supplemental material]  

A. S. Fairchild, J. L. Smith, U. Idris, J. Lu, S. Sanchez, L. B. Purvis, C. Hofacre, and M. D. Lee

Effects of Orally Administered Tetracycline on the Intestinal Community Structure of Chickens and on tet Determinant Carriage by Commensal Bacteria and Campylobacter jejuni
Appl. Environ. Microbiol. 2005 71: 5865-5872. [Abstract] [Full Text] [PDF]  

Monica K. Borucki, Clive C. Gay, James Reynolds, Katherine L. McElwain, So Hyun Kim, Douglas R. Call, and Donald P. Knowles

Genetic Diversity of Listeria monocytogenes Strains from a High-Prevalence Dairy Farm
Appl. Environ. Microbiol. 2005 71: 5893-5899. [Abstract] [Full Text] [PDF]  

Michael Schauer, Christian Kamenik, and Martin W. Hahn

Ecological Differentiation within a Cosmopolitan Group of Planktonic Freshwater Bacteria (SOL Cluster, Saprospiraceae, Bacteroidetes)
Appl. Environ. Microbiol. 2005 71: 5900-5907. [Abstract] [Full Text] [PDF] [Supplemental material]  

Frederic Gich, Karin Schubert, Alke Bruns, Herbert Hoffelner, and Jörg Overmann

Specific Detection, Isolation, and Characterization of Selected, Previously Uncultured Members of the Freshwater Bacterioplankton Community
Appl. Environ. Microbiol. 2005 71: 5908-5919. [Abstract] [Full Text] [PDF] [Supplemental material]  

Marie Lefranc, Aurélie Thénot, Cécile Lepère, and Didier Debroas

Genetic Diversity of Small Eukaryotes in Lakes Differing by Their Trophic Status
Appl. Environ. Microbiol. 2005 71: 5935-5942. [Abstract] [Full Text] [PDF]  

Natsuko Hamamura, Sarah H. Olson, David M. Ward, and William P. Inskeep

Diversity and Functional Analysis of Bacterial Communities Associated with Natural Hydrocarbon Seeps in Acidic Soils at Rainbow Springs, Yellowstone National Park
Appl. Environ. Microbiol. 2005 71: 5943-5950. [Abstract] [Full Text] [PDF]  

Antonio Dell'Anno, Cinzia Corinaldesi, Spyros Stavrakakis, Vasilis Lykousis, and Roberto Danovaro

Pelagic-Benthic Coupling and Diagenesis of Nucleic Acids in a Deep-Sea Continental Margin and an Open-Slope System of the Eastern Mediterranean
Appl. Environ. Microbiol. 2005 71: 6070-6076. [Abstract] [Full Text] [PDF]  

Thomas Clavel, Gemma Henderson, Carl-Alfred Alpert, Catherine Philippe, Lionel Rigottier-Gois, Joël Doré, and Michael Blaut

Intestinal Bacterial Communities That Produce Active Estrogen-Like Compounds Enterodiol and Enterolactone in Humans
Appl. Environ. Microbiol. 2005 71: 6077-6085. [Abstract] [Full Text] [PDF]  

Alan E. Wilson, Orlando Sarnelle, Brett A. Neilan, Tim P. Salmon, Michelle M. Gehringer, and Mark E. Hay

Genetic Variation of the Bloom-Forming Cyanobacterium Microcystis aeruginosa within and among Lakes: Implications for Harmful Algal Blooms
Appl. Environ. Microbiol. 2005 71: 6126-6133. [Abstract] [Full Text] [PDF]  

Eddie Cytryn, Jaap van Rijn, Andreas Schramm, Armin Gieseke, Dirk de Beer, and Dror Minz

Identification of Bacteria Potentially Responsible for Oxic and Anoxic Sulfide Oxidation in Biofilters of a Recirculating Mariculture System
Appl. Environ. Microbiol. 2005 71: 6134-6141. [Abstract] [Full Text] [PDF]  

Rikke Louise Meyer, Nils Risgaard-Petersen, and Diane Elizabeth Allen

Correlation between Anammox Activity and Microscale Distribution of Nitrite in a Subtropical Mangrove Sediment
Appl. Environ. Microbiol. 2005 71: 6142-6149. [Abstract] [Full Text] [PDF]  

Qingwei Luo, Lee R. Krumholz, Fares Z. Najar, Aaron D. Peacock, Bruce A. Roe, David C. White, and Mostafa S. Elshahed

Diversity of the Microeukaryotic Community in Sulfide-Rich Zodletone Spring (Oklahoma)
Appl. Environ. Microbiol. 2005 71: 6175-6184. [Abstract] [Full Text] [PDF] [Supplemental material]  

Helen A. Vrionis, Robert T. Anderson, Irene Ortiz-Bernad, Kathleen R. O'Neill, Charles T. Resch, Aaron D. Peacock, Richard Dayvault, David C. White, Philip E. Long, and Derek R. Lovley

Microbiological and Geochemical Heterogeneity in an In Situ Uranium Bioremediation Field Site
Appl. Environ. Microbiol. 2005 71: 6308-6318. [Abstract] [Full Text] [PDF]  

Gene W. Tyson, Ian Lo, Brett J. Baker, Eric E. Allen, Philip Hugenholtz, and Jillian F. Banfield

Genome-Directed Isolation of the Key Nitrogen Fixer Leptospirillum ferrodiazotrophum sp. nov. from an Acidophilic Microbial Community
Appl. Environ. Microbiol. 2005 71: 6319-6324. [Abstract] [Full Text] [PDF]  

Lynn L. Williamson, Bradley R. Borlee, Patrick D. Schloss, Changhui Guan, Heather K. Allen, and Jo Handelsman

Intracellular Screen To Identify Metagenomic Clones That Induce or Inhibit a Quorum-Sensing Biosensor
Appl. Environ. Microbiol. 2005 71: 6335-6344. [Abstract] [Full Text] [PDF]  

Rajkumari Kumaraswamy, Udo van Dongen, J. Gijs Kuenen, Wiebe Abma, Mark C. M. van Loosdrecht, and Gerard Muyzer

Characterization of Microbial Communities Removing Nitrogen Oxides from Flue Gas: the BioDeNOx Process
Appl. Environ. Microbiol. 2005 71: 6345-6352. [Abstract] [Full Text] [PDF]  

Elizabeth A. Karr, W. Matthew Sattley, Melissa R. Rice, Deborah O. Jung, Michael T. Madigan, and Laurie A. Achenbach

Diversity and Distribution of Sulfate-Reducing Bacteria in Permanently Frozen Lake Fryxell, McMurdo Dry Valleys, Antarctica
Appl. Environ. Microbiol. 2005 71: 6353-6359. [Abstract] [Full Text] [PDF]  

Karen G. Lloyd, Virginia P. Edgcomb, Stephen J. Molyneaux, Simone Böer, Carl O. Wirsen, Michael S. Atkins, and Andreas Teske

Effects of Dissolved Sulfide, pH, and Temperature on Growth and Survival of Marine Hyperthermophilic Archaea
Appl. Environ. Microbiol. 2005 71: 6383-6387. [Abstract] [Full Text] [PDF]  

Markus Timke, Ngoc Quynh Wang-Lieu, Karlheinz Altendorf, and André Lipski

Community Structure and Diversity of Biofilms from a Beer Bottling Plant as Revealed Using 16S rRNA Gene Clone Libraries
Appl. Environ. Microbiol. 2005 71: 6446-6452. [Abstract] [Full Text] [PDF] [Supplemental material]  

Ju-Ling Lin, Samantha B. Joye, Johannes C. M. Scholten, Hendrik Schäfer, Ian R. McDonald, and J. Colin Murrell

Analysis of Methane Monooxygenase Genes in Mono Lake Suggests That Increased Methane Oxidation Activity May Correlate with a Change in Methanotroph Community Structure
Appl. Environ. Microbiol. 2005 71: 6458-6462. [Abstract] [Full Text] [PDF]  

Physiology and Biotechnology:

Tyler W. Johannes, Ryan D. Woodyer, and Huimin Zhao

Directed Evolution of a Thermostable Phosphite Dehydrogenase for NAD(P)H Regeneration
Appl. Environ. Microbiol. 2005 71: 5728-5734. [Abstract] [Full Text] [PDF]  

Gavin C. Barnard, Jesse D. McCool, David W. Wood, and Tillman U. Gerngross

Integrated Recombinant Protein Expression and Purification Platform Based on Ralstonia eutropha
Appl. Environ. Microbiol. 2005 71: 5735-5742. [Abstract] [Full Text] [PDF]  

Alberto Jiménez, María A. Santos, Markus Pompejus, and José L. Revuelta

Metabolic Engineering of the Purine Pathway for Riboflavin Production in Ashbya gossypii
Appl. Environ. Microbiol. 2005 71: 5743-5751. [Abstract] [Full Text] [PDF] [Supplemental material]  

Jeroen A. Wouters, Torsten Hain, Ajub Darji, Eric Hüfner, Henrike Wemekamp-Kamphuis, Trinad Chakraborty, and Tjakko Abee

Identification and Characterization of Di- and Tripeptide Transporter DtpT of Listeria monocytogenes EGD-e
Appl. Environ. Microbiol. 2005 71: 5771-5778. [Abstract] [Full Text] [PDF]  

Elaine P. Black, Kasia Koziol-Dube, Dongsheng Guan, Jie Wei, Barbara Setlow, Donnamaria E. Cortezzo, Dallas G. Hoover, and Peter Setlow

Factors Influencing Germination of Bacillus subtilis Spores via Activation of Nutrient Receptors by High Pressure
Appl. Environ. Microbiol. 2005 71: 5879-5887. [Abstract] [Full Text] [PDF]  

Songping Zhang, Olof Norrlöw, and Estera Szwajcer Dey

Improvement of NaNO₂-Oxidizing Activity in Nitrobacter vulgaris by Coentrapment in Polyacrylamide Containing Polydimethylsiloxane Copolymer and DEAE-Sephadex
Appl. Environ. Microbiol. 2005 71: 5888-5892. [Abstract] [Full Text] [PDF]  

Tamara Aleksandrzak-Piekarczyk, Jan Kok, Pierre Renault, and Jacek Bardowski

Alternative Lactose Catabolic Pathway in Lactococcus lactis IL1403
Appl. Environ. Microbiol. 2005 71: 6060-6069. [Abstract] [Full Text] [PDF]  

Marie-Hélène Coconnier-Polter, Vanessa Liévin-Le Moal, and Alain L. Servin

A Lactobacillus acidophilus Strain of Human Gastrointestinal Microbiota Origin Elicits Killing of Enterovirulent Salmonella enterica Serovar Typhimurium by Triggering Lethal Bacterial Membrane Damage
Appl. Environ. Microbiol. 2005 71: 6115-6120. [Abstract] [Full Text] [PDF]  

Maddalena Rossi, Claudio Corradini, Alberto Amaretti, Marcello Nicolini, Anna Pompei, Simona Zanoni, and Diego Matteuzzi

Fermentation of Fructooligosaccharides and Inulin by Bifidobacteria: a Comparative Study of Pure and Fecal Cultures
Appl. Environ. Microbiol. 2005 71: 6150-6158. [Abstract] [Full Text] [PDF]  

C. Henricsson, M. C. de Jesus Ferreira, K. Hedfalk, K. Elbing, C. Larsson, R. M. Bill, J. Norbeck, S. Hohmann, and L. Gustafsson

Engineering of a Novel Saccharomyces cerevisiae Wine Strain with a Respiratory Phenotype at High External Glucose Concentrations
Appl. Environ. Microbiol. 2005 71: 6185-6192. [Abstract] [Full Text] [PDF]  

Swanny Fouchard, Anja Hemschemeier, Amandine Caruana, Jérémy Pruvost, Jack Legrand, Thomas Happe, Gilles Peltier, and Laurent Cournac

Autotrophic and Mixotrophic Hydrogen Photoproduction in Sulfur-Deprived Chlamydomonas Cells
Appl. Environ. Microbiol. 2005 71: 6199-6205. [Abstract] [Full Text] [PDF]  

Juan Pablo Busalmen and Susana R. de Sánchez

Electrochemical Polarization-Induced Changes in the Growth of Individual Cells and Biofilms of Pseudomonas fluorescens (ATCC 17552)
Appl. Environ. Microbiol. 2005 71: 6235-6240. [Abstract] [Full Text] [PDF]  

An Tanghe, Jennifer M. Carbrey, Peter Agre, Johan M. Thevelein, and Patrick Van Dijck

Aquaporin Expression and Freeze Tolerance in Candida albicans
Appl. Environ. Microbiol. 2005 71: 6434-6437. [Abstract] [Full Text] [PDF]  

Ebru Toksoy Öner, Stephen G. Oliver, and Betül Kirdar

Production of Ethanol from Starch by Respiration-Deficient Recombinant Saccharomyces cerevisiae
Appl. Environ. Microbiol. 2005 71: 6443-6445. [Abstract] [Full Text] [PDF]  

Public Health Microbiology:

Thomas E. Besser, Jeffrey T. LeJeune, Daniel H. Rice, Janice Berg, R. P. Stilborn, Katherine Kaya, Wonki Bae, and Dale D. Hancock

Increasing Prevalence of Campylobacter jejuni in Feedlot Cattle through the Feeding Period
Appl. Environ. Microbiol. 2005 71: 5752-5758. [Abstract] [Full Text] [PDF]  

Mélanie Lemunier, Cédric Francou, Sandrine Rousseaux, Sabine Houot, Philippe Dantigny, Pascal Piveteau, and Jean Guzzo

Long-Term Survival of Pathogenic and Sanitation Indicator Bacteria in Experimental Biowaste Composts
Appl. Environ. Microbiol. 2005 71: 5779-5786. [Abstract] [Full Text] [PDF]  

Paola Borella, Maria Teresa Montagna, Serena Stampi, Giovanna Stancanelli, Vincenzo Romano-Spica, Maria Triassi, Isabella Marchesi, Annalisa Bargellini, Daniela Tatò, Christian Napoli, Franca Zanetti, Erica Leoni, Matteo Moro, Stefania Scaltriti, Gabriella Ribera D'Alcalà, Rosalba Santarpia, and Stefania Boccia

Legionella Contamination in Hot Water of Italian Hotels
Appl. Environ. Microbiol. 2005 71: 5805-5813. [Abstract] [Full Text] [PDF]  

Peter Cox, Merran Griffith, Mark Angles, Daniel Deere, and Christobel Ferguson

Concentrations of Pathogens and Indicators in Animal Feces in the Sydney Watershed
Appl. Environ. Microbiol. 2005 71: 5929-5934. [Abstract] [Full Text] [PDF]  

Zexun Lu, David Lapen, Andrew Scott, Angela Dang, and Edward Topp

Identifying Host Sources of Fecal Pollution: Diversity of Escherichia coli in Confined Dairy and Swine Production Systems
Appl. Environ. Microbiol. 2005 71: 5992-5998. [Abstract] [Full Text] [PDF]  

Lisa R. Fogarty and Mary A. Voytek

Comparison of Bacteroides-Prevotella 16S rRNA Genetic Markers for Fecal Samples from Different Animal Species
Appl. Environ. Microbiol. 2005 71: 5999-6007. [Abstract] [Full Text] [PDF]  

Michael W. Sanderson, Jan M. Sargeant, David G. Renter, D. Dee Griffin, and Robert A. Smith

Factors Associated with the Presence of Coliforms in the Feed and Water of Feedlot Cattle
Appl. Environ. Microbiol. 2005 71: 6026-6032. [Abstract] [Full Text] [PDF]  

Johanna Judge, Ilias Kyriazakis, Alastair Greig, David J. Allcroft, and Michael R. Hutchings

Clustering of Mycobacterium avium subsp. paratuberculosis in Rabbits and the Environment: How Hot Is a Hot Spot?
Appl. Environ. Microbiol. 2005 71: 6033-6038. [Abstract] [Full Text] [PDF]  

Fabienne Loisy, Robert L. Atmar, Jean-Claude Le Saux, Jean Cohen, Marie-Paule Caprais, Monique Pommepuy, and Françoise S. Le Guyader

Use of Rotavirus Virus-Like Particles as Surrogates To Evaluate Virus Persistence in Shellfish
Appl. Environ. Microbiol. 2005 71: 6049-6053. [Abstract] [Full Text] [PDF]  

Michelle L. Power, Nicholas C. Sangster, Martin B. Slade, and Duncan A. Veal

Patterns of Cryptosporidium Oocyst Shedding by Eastern Grey Kangaroos Inhabiting an Australian Watershed
Appl. Environ. Microbiol. 2005 71: 6159-6164. [Abstract] [Full Text] [PDF]  

Eelco Franz, Anne D. van Diepeningen, Oscar J. de Vos, and Ariena H. C. van Bruggen

Effects of Cattle Feeding Regimen and Soil Management Type on the Fate of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in Manure, Manure-Amended Soil, and Lettuce
Appl. Environ. Microbiol. 2005 71: 6165-6174. [Abstract] [Full Text] [PDF]  

K. Rivoal, C. Ragimbeau, G. Salvat, P. Colin, and G. Ermel

Genomic Diversity of Campylobacter coli and Campylobacter jejuni Isolates Recovered from Free-Range Broiler Farms and Comparison with Isolates of Various Origins
Appl. Environ. Microbiol. 2005 71: 6216-6227. [Abstract] [Full Text] [PDF] [Supplemental material]  

Mark E. Shirtliff, Alex Bargmeyer, and Anne K. Camper

Assessment of the Ability of the Bioelectric Effect To Eliminate Mixed-Species Biofilms
Appl. Environ. Microbiol. 2005 71: 6379-6382. [Abstract] [Full Text] [PDF]  

Ewa Kuczynska, Daniel R. Shelton, and Yakov Pachepsky

Effect of Bovine Manure on Cryptosporidium parvum Oocyst Attachment to Soil
Appl. Environ. Microbiol. 2005 71: 6394-6397. [Abstract] [Full Text] [PDF]  

Alexandra Eisner, Gebhard Feierl, Gregor Gorkiewicz, Franz Dieber, Harald H. Kessler, Egon Marth, and Josef Köfer

High Prevalence of VanA-Type Vancomycin-Resistant Enterococci in Austrian Poultry
Appl. Environ. Microbiol. 2005 71: 6407-6409. [Abstract] [Full Text] [PDF]  

Mina Okochi, Hiroshi Yokokawa, Tae-Kyu Lim, Tomoyuki Taguchi, Hiromichi Takahashi, Hiroko Yokouchi, Tatsuo Kaiho, Akira Sakuma, and Tadashi Matsunaga

Disinfection of Microorganisms by Use of Electrochemically Regenerated Periodate
Appl. Environ. Microbiol. 2005 71: 6410-6413. [Abstract] [Full Text] [PDF]  

Alberto Alberti, Rosanna Zobba, Bernardo Chessa, Maria Filippa Addis, Olivier Sparagano, Maria Luisa Pinna Parpaglia, Tiziana Cubeddu, Gianpaolo Pintori, and Marco Pittau

Equine and Canine Anaplasma phagocytophilum Strains Isolated on the Island of Sardinia (Italy) Are Phylogenetically Related to Pathogenic Strains from the United States
Appl. Environ. Microbiol. 2005 71: 6418-6422. [Abstract] [Full Text] [PDF]  

M. A. Greenquist, J. S. Drouillard, J. M. Sargeant, B. E. Depenbusch, Xiaorong Shi, K. F. Lechtenberg, and T. G. Nagaraja

Comparison of Rectoanal Mucosal Swab Cultures and Fecal Cultures for Determining Prevalence of Escherichia coli O157:H7 in Feedlot Cattle
Appl. Environ. Microbiol. 2005 71: 6431-6433. [Abstract] [Full Text] [PDF]  

Sandra P. van Tongeren, Joris P. J. Slaets, H. J. M. Harmsen, and Gjalt W. Welling

Fecal Microbiota Composition and Frailty
Appl. Environ. Microbiol. 2005 71: 6438-6442. [Abstract] [Full Text] [PDF]  

Food Microbiology:

T. J. W. M. Van Gerwe, A. Bouma, W. F. Jacobs-Reitsma, J. van den Broek, D. Klinkenberg, J. A. Stegeman, and J. A. P. Heesterbeek

Quantifying Transmission of Campylobacter spp. among Broilers
Appl. Environ. Microbiol. 2005 71: 5765-5770. [Abstract] [Full Text] [PDF]  

Fabio Dal Bello, Jens Walter, Stefan Roos, Hans Jonsson, and Christian Hertel

Inducible Gene Expression in Lactobacillus reuteri LTH5531 during Type II Sourdough Fermentation
Appl. Environ. Microbiol. 2005 71: 5873-5878. [Abstract] [Full Text] [PDF]  

T. Tasara and R. Stephan

Development of an F57 Sequence-Based Real-Time PCR Assay for Detection of Mycobacterium avium subsp. paratuberculosis in Milk
Appl. Environ. Microbiol. 2005 71: 5957-5968. [Abstract] [Full Text] [PDF]  

Domitille Fayol-Messaoudi, Cédric N. Berger, Marie-Hélène Coconnier-Polter, Vanessa Liévin-Le Moal, and Alain L. Servin

pH-, Lactic Acid-, and Non-Lactic Acid-Dependent Activities of Probiotic Lactobacilli against Salmonella enterica Serovar Typhimurium
Appl. Environ. Microbiol. 2005 71: 6008-6013. [Abstract] [Full Text] [PDF]  

S. M. Roche, P. Gracieux, E. Milohanic, I. Albert, I. Virlogeux-Payant, S. Témoin, O. Grépinet, A. Kerouanton, C. Jacquet, P. Cossart, and P. Velge

Investigation of Specific Substitutions in Virulence Genes Characterizing Phenotypic Groups of Low-Virulence Field Strains of Listeria monocytogenes
Appl. Environ. Microbiol. 2005 71: 6039-6048. [Abstract] [Full Text] [PDF]  

Ana G. Binetti, Beatriz Del Río, M. Cruz Martín, and Miguel A. Álvarez

Detection and Characterization of Streptococcus thermophilus Bacteriophages by Use of the Antireceptor Gene Sequence
Appl. Environ. Microbiol. 2005 71: 6096-6103. [Abstract] [Full Text] [PDF]  

John Samelis, John N. Sofos, Patricia A. Kendall, and Gary C. Smith

Survival or Growth of Escherichia coli O157:H7 in a Model System of Fresh Meat Decontamination Runoff Waste Fluids and Its Resistance to Subsequent Lactic Acid Stress
Appl. Environ. Microbiol. 2005 71: 6228-6234. [Abstract] [Full Text] [PDF]  

Nicoline Vermeulen, Melanie Pavlovic, Matthias A. Ehrmann, Michael G. Gänzle, and Rudi F. Vogel

Functional Characterization of the Proteolytic System of Lactobacillus sanfranciscensis DSM 20451^T during Growth in Sourdough
Appl. Environ. Microbiol. 2005 71: 6260-6266. [Abstract] [Full Text] [PDF]  

Robert E. Mandrell, Leslie A. Harden, Anna Bates, William G. Miller, William F. Haddon, and Clifton K. Fagerquist

Speciation of Campylobacter coli, C. jejuni, C. helveticus, C. lari, C. sputorum, and C. upsaliensis by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
Appl. Environ. Microbiol. 2005 71: 6292-6307. [Abstract] [Full Text] [PDF] [Supplemental material]  

Malin Svensson, Elisabet Waak, Ulla Svensson, and Peter Rådström

Metabolically Improved Exopolysaccharide Production by Streptococcus thermophilus and Its Influence on the Rheological Properties of Fermented Milk
Appl. Environ. Microbiol. 2005 71: 6398-6400. [Abstract] [Full Text] [PDF]  

Enzymology and Protein Engineering:

Kazutoyo Yoda, Atsushi Toyoda, Yoshihiro Mukoyama, Yutaka Nakamura, and Hajime Minato

Cloning, Sequencing, and Expression of a Eubacterium cellulosolvens 5 Gene Encoding an Endoglucanase (Cel5A) with Novel Carbohydrate-Binding Modules, and Properties of Cel5A
Appl. Environ. Microbiol. 2005 71: 5787-5793. [Abstract] [Full Text] [PDF]  

Kazutoshi Fujii, Hirotaka Minagawa, Yoshinobu Terada, Takeshi Takaha, Takashi Kuriki, Jiro Shimada, and Hiroki Kaneko

Use of Random and Saturation Mutageneses To Improve the Properties of Thermus aquaticus Amylomaltase for Efficient Production of Cycloamyloses
Appl. Environ. Microbiol. 2005 71: 5823-5827. [Abstract] [Full Text] [PDF]  

Barbara Petschacher and Bernd Nidetzky

Engineering Candida tenuis Xylose Reductase for Improved Utilization of NADH: Antagonistic Effects of Multiple Side Chain Replacements and Performance of Site-Directed Mutants under Simulated In Vivo Conditions
Appl. Environ. Microbiol. 2005 71: 6390-6393. [Abstract] [Full Text] [PDF]  

Environmental Microbiology:

Pascal E. Saikaly, Peter G. Stroot, and Daniel B. Oerther

Use of 16S rRNA Gene Terminal Restriction Fragment Analysis To Assess the Impact of Solids Retention Time on the Bacterial Diversity of Activated Sludge
Appl. Environ. Microbiol. 2005 71: 5814-5822. [Abstract] [Full Text] [PDF]  

Bin Lin, Martin Braster, Boris M. van Breukelen, Henk W. van Verseveld, Hans V. Westerhoff, and Wilfred F. M. Röling

Geobacteraceae Community Composition Is Related to Hydrochemistry and Biodegradation in an Iron-Reducing Aquifer Polluted by a Neighboring Landfill
Appl. Environ. Microbiol. 2005 71: 5983-5991. [Abstract] [Full Text] [PDF]  

Alexandre M. Anesio, Wilhelm Granéli, George R. Aiken, David J. Kieber, and Kenneth Mopper

Effect of Humic Substance Photodegradation on Bacterial Growth and Respiration in Lake Water
Appl. Environ. Microbiol. 2005 71: 6267-6275. [Abstract] [Full Text] [PDF]  

Biodegradation:

David A. Wampler and Scott A. Ensign

Photoheterotrophic Metabolism of Acrylamide by a Newly Isolated Strain of Rhodopseudomonas palustris
Appl. Environ. Microbiol. 2005 71: 5850-5857. [Abstract] [Full Text] [PDF]  

Vandana P. Swetha and Prashant S. Phale

Metabolism of Carbaryl via 1,2-Dihydroxynaphthalene by Soil Isolates Pseudomonas sp. Strains C4, C5, and C6
Appl. Environ. Microbiol. 2005 71: 5951-5956. [Abstract] [Full Text] [PDF]  

D. M. Doughty, L. A. Sayavedra-Soto, D. J. Arp, and P. J. Bottomley

Effects of Dichloroethene Isomers on the Induction and Activity of Butane Monooxygenase in the Alkane-Oxidizing Bacterium "Pseudomonas butanovora"
Appl. Environ. Microbiol. 2005 71: 6054-6059. [Abstract] [Full Text] [PDF]  

D. J. Koch, C. Rückert, D. A. Rey, A. Mix, A. Pühler, and J. Kalinowski

Role of the ssu and seu Genes of Corynebacterium glutamicum ATCC 13032 in Utilization of Sulfonates and Sulfonate Esters as Sulfur Sources
Appl. Environ. Microbiol. 2005 71: 6104-6114. [Abstract] [Full Text] [PDF] [Supplemental material]  

Robert W. Murdoch and Anthony G. Hay

Formation of Catechols via Removal of Acid Side Chains from Ibuprofen and Related Aromatic Acids
Appl. Environ. Microbiol. 2005 71: 6121-6125. [Abstract] [Full Text] [PDF]  

P. M. Bradley, S. Richmond, and F. H. Chapelle

Chloroethene Biodegradation in Sediments at 4°C
Appl. Environ. Microbiol. 2005 71: 6414-6417. [Abstract] [Full Text] [PDF]  

Evolutionary and Genomic Microbiology:

Tzu-Chiao Chao, Jens Buhrmester, Nicole Hansmeier, Alfred Pühler, and Stefan Weidner

Role of the Regulatory Gene rirA in the Transcriptional Response of Sinorhizobium meliloti to Iron Limitation
Appl. Environ. Microbiol. 2005 71: 5969-5982. [Abstract] [Full Text] [PDF] [Supplemental material]  

Richard J. Meinersmann, Robert W. Phillips, Kelli L. Hiett, and Paula Fedorka-Cray

Differentiation of Campylobacter Populations as Demonstrated by Flagellin Short Variable Region Sequences
Appl. Environ. Microbiol. 2005 71: 6368-6374. [Abstract] [Full Text] [PDF]  

Mycology:

S. Malonek, M. C. Rojas, P. Hedden, P. Hopkins, and B. Tudzynski

Restoration of Gibberellin Production in Fusarium proliferatum by Functional Complementation of Enzymatic Blocks
Appl. Environ. Microbiol. 2005 71: 6014-6025. [Abstract] [Full Text] [PDF]  

Ada Viterbo, Michal Harel, Benjamin A. Horwitz, Ilan Chet, and Prasun K. Mukherjee

Trichoderma Mitogen-Activated Protein Kinase Signaling Is Involved in Induction of Plant Systemic Resistance
Appl. Environ. Microbiol. 2005 71: 6241-6246. [Abstract] [Full Text] [PDF]  

Yumi Magae, Kobun Akahane, Kimiyoshi Nakamura, and Shigeyuki Tsunoda

Simple Colorimetric Method for Detecting Degenerate Strains of the Cultivated Basidiomycete Flammulina velutipes (Enokitake)
Appl. Environ. Microbiol. 2005 71: 6388-6389. [Abstract] [Full Text] [PDF]  

Invertebrate Microbiology:

Samantha S. Orchard and Heidi Goodrich-Blair

Pyrimidine Nucleoside Salvage Confers an Advantage to Xenorhabdus nematophila in Its Host Interactions
Appl. Environ. Microbiol. 2005 71: 6254-6259. [Abstract] [Full Text] [PDF]  

Cécile Rang, Patricia Gil, Nathalie Neisner, Jeroen Van Rie, and Roger Frutos

Novel Vip3-Related Protein from Bacillus thuringiensis
Appl. Environ. Microbiol. 2005 71: 6276-6281. [Abstract] [Full Text] [PDF] [Supplemental material]  

Plant Microbiology:

Marcello Donini, Chiara Lico, Selene Baschieri, Stefania Conti, Walter Magliani, Luciano Polonelli, and Eugenio Benvenuto

Production of an Engineered Killer Peptide in Nicotiana benthamiana by Using a Potato virus X Expression System
Appl. Environ. Microbiol. 2005 71: 6360-6367. [Abstract] [Full Text] [PDF]  

Geomicrobiology:

Tina Treude, Katrin Knittel, Martin Blumenberg, Richard Seifert, and Antje Boetius

Subsurface Microbial Methanotrophic Mats in the Black Sea
Appl. Environ. Microbiol. 2005 71: 6375-6378. [Abstract] [Full Text] [PDF]  

T. V. Khijniak, A. I. Slobodkin, V. Coker, J. C. Renshaw, F. R. Livens, E. A. Bonch-Osmolovskaya, N.-K. Birkeland, N. N. Medvedeva-Lyalikova, and J. R. Lloyd

Reduction of Uranium(VI) Phosphate during Growth of the Thermophilic Bacterium Thermoterrabacterium ferrireducens
Appl. Environ. Microbiol. 2005 71: 6423-6426. [Abstract] [Full Text] [PDF]  

Letter to the Editor:

Andrew S. Gordon, Harold G. Marshall, Sandra E. Shumway, Kathryn J. Coyne, Alan J. Lewitus, Michael A. Mallin, Parke A. Rublee, Tomás Drgon, Keiko Saito, Patrick M. Gillevet, Masoumeh Sikaroodi, and Gerardo R. Vasta

Characterization of Pfiesteria Ichthyocidal Activity
Appl. Environ. Microbiol. 2005 71: 6463-6464. [Full Text] [PDF]  

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