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Physiology and Biotechnology:

Gwénaëlle Choquet, Nathalie Jehan, Christine Pissavin, Carlos Blanco, and Mohamed Jebbar

OusB, a Broad-Specificity ABC-Type Transporter from Erwinia chrysanthemi, Mediates Uptake of Glycine Betaine and Choline with a High Affinity
Appl. Environ. Microbiol. 2005 71: 3389-3398. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gyeong Tae Eom, Jae Kwang Song, Jung Hoon Ahn, Yeon Soo Seo, and Joon Shick Rhee

Enhancement of the Efficiency of Secretion of Heterologous Lipase in Escherichia coli by Directed Evolution of the ABC Transporter System
Appl. Environ. Microbiol. 2005 71: 3468-3474. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Roger Koukiekolo, Hee-Yeon Cho, Akihiko Kosugi, Masayuki Inui, Hideaki Yukawa, and Roy H. Doi

Degradation of Corn Fiber by Clostridium cellulovorans Cellulases and Hemicellulases and Contribution of Scaffolding Protein CbpA
Appl. Environ. Microbiol. 2005 71: 3504-3511. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Philipp De Spiegeleer, Jan Sermon, Kristof Vanoirbeek, Abram Aertsen, and Chris W. Michiels

Role of Porins in Sensitivity of Escherichia coli to Antibacterial Activity of the Lactoperoxidase Enzyme System
Appl. Environ. Microbiol. 2005 71: 3512-3518. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Geir Mathiesen, Kathrin Huehne, Lothar Kroeckel, Lars Axelsson, and Vincent G. H. Eijsink

Characterization of a New Bacteriocin Operon in Sakacin P-Producing Lactobacillus sakei, Showing Strong Translational Coupling between the Bacteriocin and Immunity Genes
Appl. Environ. Microbiol. 2005 71: 3565-3574. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kousuke Inoue, Yoshihide Makino, and Nobuya Itoh

Purification and Characterization of a Novel Alcohol Dehydrogenase from Leifsonia sp. Strain S749: a Promising Biocatalyst for an Asymmetric Hydrogen Transfer Bioreduction
Appl. Environ. Microbiol. 2005 71: 3633-3641. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Martin Obst, Andreas Krug, Heinrich Luftmann, and Alexander Steinbüchel

Degradation of Cyanophycin by Sedimentibacter hongkongensis Strain KI and Citrobacter amalonaticus Strain G Isolated from an Anaerobic Bacterial Consortium
Appl. Environ. Microbiol. 2005 71: 3642-3652. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Bill Widner, Régine Behr, Steve Von Dollen, Maria Tang, Tia Heu, Alan Sloma, Dave Sternberg, Paul L. DeAngelis, Paul H. Weigel, and Steve Brown

Hyaluronic Acid Production in Bacillus subtilis
Appl. Environ. Microbiol. 2005 71: 3747-3752. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

J. E. Purvis, L. P. Yomano, and L. O. Ingram

Enhanced Trehalose Production Improves Growth of Escherichia coli under Osmotic Stress
Appl. Environ. Microbiol. 2005 71: 3761-3769. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Daniel R. Bond, Tünde Mester, Camilla L. Nesbø, Andrea V. Izquierdo-Lopez, Frank L. Collart, and Derek R. Lovley

Characterization of Citrate Synthase from Geobacter sulfurreducens and Evidence for a Family of Citrate Synthases Similar to Those of Eukaryotes throughout the Geobacteraceae
Appl. Environ. Microbiol. 2005 71: 3858-3865. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Patrícia A. Ramalho, Sandra Paiva, A. Cavaco-Paulo, Margarida Casal, M. Helena Cardoso, and M. Teresa Ramalho

Azo Reductase Activity of Intact Saccharomyces cerevisiae Cells Is Dependent on the Fre1p Component of Plasma Membrane Ferric Reductase
Appl. Environ. Microbiol. 2005 71: 3882-3888. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Dacheng Ren, Rongjun Zuo, Andrés F. González Barrios, Laura A. Bedzyk, Gary R. Eldridge, Mark E. Pasmore, and Thomas K. Wood

Differential Gene Expression for Investigation of Escherichia coli Biofilm Inhibition by Plant Extract Ursolic Acid
Appl. Environ. Microbiol. 2005 71: 4022-4034. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Naoki Awano, Masaru Wada, Hirotada Mori, Shigeru Nakamori, and Hiroshi Takagi

Identification and Functional Analysis of Escherichia coli Cysteine Desulfhydrases
Appl. Environ. Microbiol. 2005 71: 4149-4152. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Food Microbiology:

Eva Rodriguez, Juan L. Arques, Manuel Nuñez, Pilar Gaya, and Margarita Medina

Combined Effect of High-Pressure Treatments and Bacteriocin-Producing Lactic Acid Bacteria on Inactivation of Escherichia coli O157:H7 in Raw-Milk Cheese
Appl. Environ. Microbiol. 2005 71: 3399-3404. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Remco Kort, Andrea C. O'Brien, Ivo H. M. van Stokkum, Suus J. C. M. Oomes, Wim Crielaard, Klaas J. Hellingwerf, and Stanley Brul

Assessment of Heat Resistance of Bacterial Spores from Food Product Isolates by Fluorescence Monitoring of Dipicolinic Acid Release
Appl. Environ. Microbiol. 2005 71: 3556-3564. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

A. Deepanjali, H. Sanath Kumar, I. Karunasagar, and I. Karunasagar

Seasonal Variation in Abundance of Total and Pathogenic Vibrio parahaemolyticus Bacteria in Oysters along the Southwest Coast of India
Appl. Environ. Microbiol. 2005 71: 3575-3580. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Filip de Vin, Peter Rådström, Lieve Herman, and Luc De Vuyst

Molecular and Biochemical Analysis of the Galactose Phenotype of Dairy Streptococcus thermophilus Strains Reveals Four Different Fermentation Profiles
Appl. Environ. Microbiol. 2005 71: 3659-3667. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mark G. Wise and Gregory R. Siragusa

Quantitative Detection of Clostridium perfringens in the Broiler Fowl Gastrointestinal Tract by Real-Time PCR
Appl. Environ. Microbiol. 2005 71: 3911-3916. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Shashi K. Sharma, Brian S. Eblen, Robert L. Bull, Donald H. Burr, and Richard C. Whiting

Evaluation of Lateral-Flow Clostridium botulinum Neurotoxin Detection Kits for Food Analysis
Appl. Environ. Microbiol. 2005 71: 3935-3941. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

S. Kralj, E. Stripling, P. Sanders, G. H. van Geel-Schutten, and L. Dijkhuizen

Highly Hydrolytic Reuteransucrase from Probiotic Lactobacillus reuteri Strain ATCC 55730
Appl. Environ. Microbiol. 2005 71: 3942-3950. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Shenghui Cui, Beilei Ge, Jie Zheng, and Jianghong Meng

Prevalence and Antimicrobial Resistance of Campylobacter spp. and Salmonella Serovars in Organic Chickens from Maryland Retail Stores
Appl. Environ. Microbiol. 2005 71: 4108-4111. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Public Health Microbiology:

Michael A. Hornitzky, Kim Mercieca, Karl A. Bettelheim, and Steven P. Djordjevic

Bovine Feces from Animals with Gastrointestinal Infections Are a Source of Serologically Diverse Atypical Enteropathogenic Escherichia coli and Shiga Toxin-Producing E. coli Strains That Commonly Possess Intimin
Appl. Environ. Microbiol. 2005 71: 3405-3412. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Miguel Angel Jiménez-Clavero, Estela Escribano-Romero, Carmen Mansilla, Nuria Gómez, Laura Córdoba, Neftal Roblas, Fernando Ponz, Victoria Ley, and Juan-Carlos Sáiz

Survey of Bovine Enterovirus in Biological and Environmental Samples by a Highly Sensitive Real-Time Reverse Transcription-PCR
Appl. Environ. Microbiol. 2005 71: 3536-3543. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hassan Hajjaj, Catherine Macé, Matthew Roberts, Peter Niederberger, and Laurent B. Fay

Effect of 26-Oxygenosterols from Ganoderma lucidum and Their Activity as Cholesterol Synthesis Inhibitors
Appl. Environ. Microbiol. 2005 71: 3653-3658. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

S. Thisted Lambertz and M.-L. Danielsson-Tham

Identification and Characterization of Pathogenic Yersinia enterocolitica Isolates by PCR and Pulsed-Field Gel Electrophoresis
Appl. Environ. Microbiol. 2005 71: 3674-3681. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kathleen J. Zaleski, Karen L. Josephson, Charles P. Gerba, and Ian L. Pepper

Potential Regrowth and Recolonization of Salmonellae and Indicators in Biosolids and Biosolid-Amended Soil
Appl. Environ. Microbiol. 2005 71: 3701-3708. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Brendon J. King, Alexandra R. Keegan, Paul T. Monis, and Christopher P. Saint

Environmental Temperature Controls Cryptosporidium Oocyst Metabolic Rate and Associated Retention of Infectivity
Appl. Environ. Microbiol. 2005 71: 3848-3857. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

G. D. Inglis, T. A. McAllister, H. W. Busz, L. J. Yanke, D. W. Morck, M. E. Olson, and R. R. Read

Effects of Subtherapeutic Administration of Antimicrobial Agents to Beef Cattle on the Prevalence of Antimicrobial Resistance in Campylobacter jejuni and Campylobacter hyointestinalis
Appl. Environ. Microbiol. 2005 71: 3872-3881. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Angela Roberts, Yvonne Chan, and Martin Wiedmann

Definition of Genetically Distinct Attenuation Mechanisms in Naturally Virulence-Attenuated Listeria monocytogenes by Comparative Cell Culture and Molecular Characterization
Appl. Environ. Microbiol. 2005 71: 3900-3910. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Shlomo Sela, David Nestel, Riky Pinto, Esther Nemny-Lavy, and Moshe Bar-Joseph

Mediterranean Fruit Fly as a Potential Vector of Bacterial Pathogens
Appl. Environ. Microbiol. 2005 71: 4052-4056. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Environmental Microbiology:

Ivonne Nijenhuis, Janet Andert, Kirsten Beck, Matthias Kästner, Gabriele Diekert, and Hans-Hermann Richnow

Stable Isotope Fractionation of Tetrachloroethene during Reductive Dechlorination by Sulfurospirillum multivorans and Desulfitobacterium sp. Strain PCE-S and Abiotic Reactions with Cyanocobalamin
Appl. Environ. Microbiol. 2005 71: 3413-3419. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Alexander Loy, Wolfgang Beisker, and Harald Meier

Diversity of Bacteria Growing in Natural Mineral Water after Bottling
Appl. Environ. Microbiol. 2005 71: 3624-3632. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Min Fang, Robert J. Kremer, Peter P. Motavalli, and Georgia Davis

Bacterial Diversity in Rhizospheres of Nontransgenic and Transgenic Corn
Appl. Environ. Microbiol. 2005 71: 4132-4136. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Youxian Wu, Thomas Clevenger, and Baolin Deng

Impacts of Goethite Particles on UV Disinfection of Drinking Water
Appl. Environ. Microbiol. 2005 71: 4140-4143. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Don L. Tucker, Fathi Karouia, Jim Wang, Yi Luo, Tong-Bin Li, Richard C. Willson, Yuriy Fofanov, and George E. Fox

Effect of an Artificial RNA Marker on Gene Expression in Escherichia coli
Appl. Environ. Microbiol. 2005 71: 4156-4159. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Enzymology and Protein Engineering:

Helena Gradisar, Jozica Friedrich, Igor Krizaj, and Roman Jerala

Similarities and Specificities of Fungal Keratinolytic Proteases: Comparison of Keratinases of Paecilomyces marquandii and Doratomyces microsporus to Some Known Proteases
Appl. Environ. Microbiol. 2005 71: 3420-3426. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Marta R. Escutia, Laura Bowater, Anne Edwards, Andrew R. Bottrill, Matthew R. Burrell, Rubén Polanco, Rafael Vicuña, and Stephen Bornemann

Cloning and Sequencing of Two Ceriporiopsis subvermispora Bicupin Oxalate Oxidase Allelic Isoforms: Implications for the Reaction Specificity of Oxalate Oxidases and Decarboxylases
Appl. Environ. Microbiol. 2005 71: 3608-3616. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Meike Ballschmiter, Martin Armbrecht, Krasimira Ivanova, Garabed Antranikian, and Wolfgang Liebl

AmyA, an -Amylase with ß-Cyclodextrin-Forming Activity, and AmyB from the Thermoalkaliphilic Organism Anaerobranca gottschalkii: Two -Amylases Adapted to Their Different Cellular Localizations
Appl. Environ. Microbiol. 2005 71: 3709-3715. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

R. E. Parales, R. Huang, C.-L. Yu, J. V. Parales, F. K. N. Lee, D. J. Lessner, M. M. Ivkovic-Jensen, W. Liu, R. Friemann, S. Ramaswamy, and D. T. Gibson

Purification, Characterization, and Crystallization of the Components of the Nitrobenzene and 2-Nitrotoluene Dioxygenase Enzyme Systems
Appl. Environ. Microbiol. 2005 71: 3806-3814. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Carolin Gödde, Kerstin Sahm, Stan J. J. Brouns, Leon D. Kluskens, John van der Oost, Willem M. de Vos, and Garabed Antranikian

Cloning and Expression of Islandisin, a New Thermostable Subtilisin from Fervidobacterium islandicum, in Escherichia coli
Appl. Environ. Microbiol. 2005 71: 3951-3958. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Lingyun Rui, Li Cao, Wilfred Chen, Kenneth F. Reardon, and Thomas K. Wood

Protein Engineering of Epoxide Hydrolase from Agrobacterium radiobacter AD1 for Enhanced Activity and Enantioselective Production of (R)-1-Phenylethane-1,2-Diol
Appl. Environ. Microbiol. 2005 71: 3995-4003. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Methods:

Siouxsie Wiles, Kathryn Ferguson, Martha Stefanidou, Douglas B. Young, and Brian D. Robertson

Alternative Luciferase for Monitoring Bacterial Cells under Adverse Conditions
Appl. Environ. Microbiol. 2005 71: 3427-3432. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

M. A. Yáñez, C. Carrasco-Serrano, V. M. Barberá, and V. Catalán

Quantitative Detection of Legionella pneumophila in Water Samples by Immunomagnetic Purification and Real-Time PCR Amplification of the dotA Gene
Appl. Environ. Microbiol. 2005 71: 3433-3441. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gary P. Richards, Michael A. Watson, and Salina Parveen

Development of a Simple and Rapid Fluorogenic Procedure for Identification of Vibrionaceae Family Members
Appl. Environ. Microbiol. 2005 71: 3524-3527. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Prashant K. Sharma, Marjon J. Gibcus, Henny C. van der Mei, and Henk J. Busscher

Influence of Fluid Shear and Microbubbles on Bacterial Detachment from a Surface
Appl. Environ. Microbiol. 2005 71: 3668-3673. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Saskia A. Rutjes, Ronald Italiaander, Harold H. J. L. van den Berg, Willemijn J. Lodder, and Ana Maria de Roda Husman

Isolation and Detection of Enterovirus RNA from Large-Volume Water Samples by Using the NucliSens miniMAG System and Real-Time Nucleic Acid Sequence-Based Amplification
Appl. Environ. Microbiol. 2005 71: 3734-3740. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Zhili He, Liyou Wu, Xingyuan Li, Matthew W. Fields, and Jizhong Zhou

Empirical Establishment of Oligonucleotide Probe Design Criteria
Appl. Environ. Microbiol. 2005 71: 3753-3760. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

David R. Johnson, Patrick K. H. Lee, Victor F. Holmes, and Lisa Alvarez-Cohen

An Internal Reference Technique for Accurately Quantifying Specific mRNAs by Real-Time PCR with Application to the tceA Reductive Dehalogenase Gene
Appl. Environ. Microbiol. 2005 71: 3866-3871. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Takaaki Sato, Toshiaki Fukui, Haruyuki Atomi, and Tadayuki Imanaka

Improved and Versatile Transformation System Allowing Multiple Genetic Manipulations of the Hyperthermophilic Archaeon Thermococcus kodakaraensis
Appl. Environ. Microbiol. 2005 71: 3889-3899. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

George W. Payne, Peter Vandamme, Sara H. Morgan, John J. LiPuma, Tom Coenye, Andrew J. Weightman, T. Hefin Jones, and Eshwar Mahenthiralingam

Development of a recA Gene-Based Identification Approach for the Entire Burkholderia Genus
Appl. Environ. Microbiol. 2005 71: 3917-3927. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Pilar Delgado-Viscogliosi, Tristan Simonart, Virginie Parent, Grégory Marchand, Marie Dobbelaere, Eric Pierlot, Véronique Pierzo, Florence Menard-Szczebara, Elisabeth Gaudard-Ferveur, Karine Delabre, and Jean Marie Delattre

Rapid Method for Enumeration of Viable Legionella pneumophila and Other Legionella spp. in Water
Appl. Environ. Microbiol. 2005 71: 4086-4096. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Claudine Hames, Sven Halbedel, Oliver Schilling, and Jörg Stülke

Multiple-Mutation Reaction: a Method for Simultaneous Introduction of Multiple Mutations into the glpK Gene of Mycoplasma pneumoniae
Appl. Environ. Microbiol. 2005 71: 4097-4100. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Noah Fierer, Jason A. Jackson, Rytas Vilgalys, and Robert B. Jackson

Assessment of Soil Microbial Community Structure by Use of Taxon-Specific Quantitative PCR Assays
Appl. Environ. Microbiol. 2005 71: 4117-4120. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Rachel S. Poretsky, Nasreen Bano, Alison Buchan, Gary LeCleir, Jutta Kleikemper, Maria Pickering, Whitney M. Pate, Mary Ann Moran, and James T. Hollibaugh

Analysis of Microbial Gene Transcripts in Environmental Samples
Appl. Environ. Microbiol. 2005 71: 4121-4126. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Genetics and Molecular Biology:

Xi-Hui Shen, Cheng-Ying Jiang, Yan Huang, Zhi-Pei Liu, and Shuang-Jiang Liu

Functional Identification of Novel Genes Involved in the Glutathione-Independent Gentisate Pathway in Corynebacterium glutamicum
Appl. Environ. Microbiol. 2005 71: 3442-3452. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sinéad M. Ryan, Gerald F. Fitzgerald, and Douwe van Sinderen

Transcriptional Regulation and Characterization of a Novel ß-Fructofuranosidase-Encoding Gene from Bifidobacterium breve UCC2003
Appl. Environ. Microbiol. 2005 71: 3475-3482. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mei-Kwei Yang, Shu-Ray Su, and Vin-Long Sung

Identification and Characterization of a Second lexA Gene of Xanthomonas axonopodis Pathovar citri
Appl. Environ. Microbiol. 2005 71: 3589-3598. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Keizo Nagasaki, Yoko Shirai, Yuji Tomaru, Kensho Nishida, and Shmuel Pietrokovski

Algal Viruses with Distinct Intraspecies Host Specificities Include Identical Intein Elements
Appl. Environ. Microbiol. 2005 71: 3599-3607. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yajun Yan, Joseph Chemler, Lixuan Huang, Stefan Martens, and Mattheos A. G. Koffas

Metabolic Engineering of Anthocyanin Biosynthesis in Escherichia coli
Appl. Environ. Microbiol. 2005 71: 3617-3623. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ranjana Mitra, Hirendra K. Das, and Aparna Dixit

Identification of a Positive Transcription Regulatory Element within the Coding Region of the nifLA Operon in Azotobacter vinelandii
Appl. Environ. Microbiol. 2005 71: 3716-3724. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

A. V. Karlyshev and B. W. Wren

Development and Application of an Insertional System for Gene Delivery and Expression in Campylobacter jejuni
Appl. Environ. Microbiol. 2005 71: 4004-4013. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Xiao-Zhou Zhang, Zhong-Li Cui, Qing Hong, and Shun-Peng Li

High-Level Expression and Secretion of Methyl Parathion Hydrolase in Bacillus subtilis WB800
Appl. Environ. Microbiol. 2005 71: 4101-4103. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mycology:

Takeo Shimizu, Hiroshi Kinoshita, Shinji Ishihara, Kanae Sakai, Shiro Nagai, and Takuya Nihira

Polyketide Synthase Gene Responsible for Citrinin Biosynthesis in Monascus purpureus
Appl. Environ. Microbiol. 2005 71: 3453-3457. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Meryl A. Davis, Marion C. Askin, and Michael J. Hynes

Amino Acid Catabolism by an areA-Regulated Gene Encoding an L-Amino Acid Oxidase with Broad Substrate Specificity in Aspergillus nidulans
Appl. Environ. Microbiol. 2005 71: 3551-3555. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kurt Brunner, Susanne Zeilinger, Rosalia Ciliento, Sheridian L. Woo, Matteo Lorito, Christian P. Kubicek, and Robert L. Mach

Improvement of the Fungal Biocontrol Agent Trichoderma atroviride To Enhance both Antagonism and Induction of Plant Systemic Disease Resistance
Appl. Environ. Microbiol. 2005 71: 3959-3965. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Biodegradation:

Cristiana Cravo-Laureau, Vincent Grossi, Danielle Raphel, Robert Matheron, and Agnès Hirschler-Réa

Anaerobic n-Alkane Metabolism by a Sulfate-Reducing Bacterium, Desulfatibacillum aliphaticivorans Strain CV2803^T
Appl. Environ. Microbiol. 2005 71: 3458-3467. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kelly D. Goodwin, Ryszard Tokarczyk, F. Carol Stephens, and Eric S. Saltzman

Description of Toluene Inhibition of Methyl Bromide Biodegradation in Seawater and Isolation of a Marine Toluene Oxidizer That Degrades Methyl Bromide
Appl. Environ. Microbiol. 2005 71: 3495-3503. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Alison M. Cupples, Robert A. Sanford, and Gerald K. Sims

Dehalogenation of the Herbicides Bromoxynil (3,5-Dibromo-4-Hydroxybenzonitrile) and Ioxynil (3,5-Diiodino-4-Hydroxybenzonitrile) by Desulfitobacterium chlororespirans
Appl. Environ. Microbiol. 2005 71: 3741-3746. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

D. J. Vacca, W. F. Bleam, and W. J. Hickey

Isolation of Soil Bacteria Adapted To Degrade Humic Acid-Sorbed Phenanthrene
Appl. Environ. Microbiol. 2005 71: 3797-3805. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sebastian R. Sørensen, Jim Rasmussen, Carsten S. Jacobsen, Ole S. Jacobsen, René K. Juhler, and Jens Aamand

Elucidating the Key Member of a Linuron-Mineralizing Bacterial Community by PCR and Reverse Transcription-PCR Denaturing Gradient Gel Electrophoresis 16S rRNA Gene Fingerprinting and Cultivation
Appl. Environ. Microbiol. 2005 71: 4144-4148. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Microbial Ecology:

Suresh Jasti, Michael E. Sieracki, Nicole J. Poulton, Michael W. Giewat, and Juliette N. Rooney-Varga

Phylogenetic Diversity and Specificity of Bacteria Closely Associated with Alexandrium spp. and Other Phytoplankton
Appl. Environ. Microbiol. 2005 71: 3483-3494. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Carol Mancuso Nichols, John P. Bowman, and Jean Guezennec

Effects of Incubation Temperature on Growth and Production of Exopolysaccharides by an Antarctic Sea Ice Bacterium Grown in Batch Culture
Appl. Environ. Microbiol. 2005 71: 3519-3523. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Keizo Nagasaki, Yuji Tomaru, Yoshitake Takao, Kensho Nishida, Yoko Shirai, Hidekazu Suzuki, and Tamotsu Nagumo

Previously Unknown Virus Infects Marine Diatom
Appl. Environ. Microbiol. 2005 71: 3528-3535. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mauro Tonolla, Raffaele Peduzzi, and Dittmar Hahn

Long-Term Population Dynamics of Phototrophic Sulfur Bacteria in the Chemocline of Lake Cadagno, Switzerland
Appl. Environ. Microbiol. 2005 71: 3544-3550. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Roland Thar and Tom Fenchel

Survey of Motile Microaerophilic Bacterial Morphotypes in the Oxygen Gradient above a Marine Sulfidic Sediment
Appl. Environ. Microbiol. 2005 71: 3682-3691. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Alan W. Walker, Sylvia H. Duncan, E. Carol McWilliam Leitch, Matthew W. Child, and Harry J. Flint

pH and Peptide Supply Can Radically Alter Bacterial Populations and Short-Chain Fatty Acid Ratios within Microbial Communities from the Human Colon
Appl. Environ. Microbiol. 2005 71: 3692-3700. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kirsten S. Habicht, Lilian Salling, Bo Thamdrup, and Donald E. Canfield

Effect of Low Sulfate Concentrations on Lactate Oxidation and Isotope Fractionation during Sulfate Reduction by Archaeoglobus fulgidus Strain Z
Appl. Environ. Microbiol. 2005 71: 3770-3777. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Barbara Hendrickx, Winnie Dejonghe, Wesley Boënne, Maria Brennerova, Miroslav Cernik, Tomas Lederer, Margarete Bucheli-Witschel, Leen Bastiaens, Willy Verstraete, Eva M. Top, Ludo Diels, and Dirk Springael

Dynamics of an Oligotrophic Bacterial Aquifer Community during Contact with a Groundwater Plume Contaminated with Benzene, Toluene, Ethylbenzene, and Xylenes: an In Situ Mesocosm Study
Appl. Environ. Microbiol. 2005 71: 3815-3825. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Claudia Knief, Supika Vanitchung, Narumon W. Harvey, Ralf Conrad, Peter F. Dunfield, and Amnat Chidthaisong

Diversity of Methanotrophic Bacteria in Tropical Upland Soils under Different Land Uses
Appl. Environ. Microbiol. 2005 71: 3826-3831. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Dagmar Kapfhammer, Ece Karatan, Kathryn J. Pflughoeft, and Paula I. Watnick

Role for Glycine Betaine Transport in Vibrio cholerae Osmoadaptation and Biofilm Formation within Microbial Communities
Appl. Environ. Microbiol. 2005 71: 3840-3847. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Marcel T. J. van der Meer, Stefan Schouten, Mary M. Bateson, Ulrich Nübel, Andrea Wieland, Michael Kühl, Jan W. de Leeuw, Jaap S. Sinninghe Damsté, and David M. Ward

Diel Variations in Carbon Metabolism by Green Nonsulfur-Like Bacteria in Alkaline Siliceous Hot Spring Microbial Mats from Yellowstone National Park
Appl. Environ. Microbiol. 2005 71: 3978-3986. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Satoshi Okabe, Tomonori Kindaichi, and Tsukasa Ito

Fate of ¹⁴C-Labeled Microbial Products Derived from Nitrifying Bacteria in Autotrophic Nitrifying Biofilms
Appl. Environ. Microbiol. 2005 71: 3987-3994. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Zhiqiang Hu, Gabriela Hidalgo, Paul L. Houston, Anthony G. Hay, Michael L. Shuler, Héctor D. Abruña, William C. Ghiorse, and Leonard W. Lion

Determination of Spatial Distributions of Zinc and Active Biomass in Microbial Biofilms by Two-Photon Laser Scanning Microscopy
Appl. Environ. Microbiol. 2005 71: 4014-4021. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yoshitomo Kikuchi, Xian-Ying Meng, and Takema Fukatsu

Gut Symbiotic Bacteria of the Genus Burkholderia in the Broad-Headed Bugs Riptortus clavatus and Leptocorisa chinensis (Heteroptera: Alydidae)
Appl. Environ. Microbiol. 2005 71: 4035-4043. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Daniel Kadouri and George A. O'Toole

Susceptibility of Biofilms to Bdellovibrio bacteriovorus Attack
Appl. Environ. Microbiol. 2005 71: 4044-4051. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yunhong Kong, Jeppe Lund Nielsen, and Per Halkjær Nielsen

Identity and Ecophysiology of Uncultured Actinobacterial Polyphosphate-Accumulating Organisms in Full-Scale Enhanced Biological Phosphorus Removal Plants
Appl. Environ. Microbiol. 2005 71: 4076-4085. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Tommy H. Nielsen, Ole Nybroe, Birgit Koch, Michael Hansen, and Jan Sørensen

Genes Involved in Cyclic Lipopeptide Production Are Important for Seed and Straw Colonization by Pseudomonas sp. Strain DSS73
Appl. Environ. Microbiol. 2005 71: 4112-4116. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Laura Steindler, Dorothée Huchon, Adi Avni, and Micha Ilan

16S rRNA Phylogeny of Sponge-Associated Cyanobacteria
Appl. Environ. Microbiol. 2005 71: 4127-4131. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Carolina Lúquez, María I. Bianco, Laura I. T. de Jong, María D. Sagua, Graciela N. Arenas, Alberto S. Ciccarelli, and Rafael A. Fernández

Distribution of Botulinum Toxin-Producing Clostridia in Soils of Argentina
Appl. Environ. Microbiol. 2005 71: 4137-4139. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Christophe Lay, Lionel Rigottier-Gois, Kim Holmstrøm, Mirjana Rajilic, Elaine E. Vaughan, Willem M. de Vos, Matthew D. Collins, Ralph Thiel, Pawel Namsolleck, Michaël Blaut, and Joël Doré

Colonic Microbiota Signatures across Five Northern European Countries
Appl. Environ. Microbiol. 2005 71: 4153-4155. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Plant Microbiology:

A. P. Hert, P. D. Roberts, M. T. Momol, G. V. Minsavage, S. M. Tudor-Nelson, and J. B. Jones

Relative Importance of Bacteriocin-Like Genes in Antagonism of Xanthomonas perforans Tomato Race 3 to Xanthomonas euvesicatoria Tomato Race 1 Strains
Appl. Environ. Microbiol. 2005 71: 3581-3588. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Luis A. Rivas, John Mansfield, George Tsiamis, Robert W. Jackson, and Jesús Murillo

Changes in Race-Specific Virulence in Pseudomonas syringae pv. phaseolicola Are Associated with a Chimeric Transposable Element and Rare Deletion Events in a Plasmid-Borne Pathogenicity Island
Appl. Environ. Microbiol. 2005 71: 3778-3785. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Md. Tofazzal Islam, Yasuyuki Hashidoko, Abhinandan Deora, Toshiaki Ito, and Satoshi Tahara

Suppression of Damping-Off Disease in Host Plants by the Rhizoplane Bacterium Lysobacter sp. Strain SB-K88 Is Linked to Plant Colonization and Antibiosis against Soilborne Peronosporomycetes
Appl. Environ. Microbiol. 2005 71: 3786-3796. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Erin L. Schuenzel, Mark Scally, Richard Stouthamer, and Leonard Nunney

A Multigene Phylogenetic Study of Clonal Diversity and Divergence in North American Strains of the Plant Pathogen Xylella fastidiosa
Appl. Environ. Microbiol. 2005 71: 3832-3839. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Geomicrobiology:

Peter R. Girguis, Aaron E. Cozen, and Edward F. DeLong

Growth and Population Dynamics of Anaerobic Methane-Oxidizing Archaea and Sulfate-Reducing Bacteria in a Continuous-Flow Bioreactor
Appl. Environ. Microbiol. 2005 71: 3725-3733. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mamie Nozawa-Inoue, Kate M. Scow, and Dennis E. Rolston

Reduction of Perchlorate and Nitrate by Microbial Communities in Vadose Soil
Appl. Environ. Microbiol. 2005 71: 3928-3934. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Invertebrate Microbiology:

Shogo Atsumi, Eri Mizuno, Hirotaka Hara, Kazuko Nakanishi, Madoka Kitami, Nami Miura, Hiroko Tabunoki, Ayako Watanabe, and Ryoichi Sato

Location of the Bombyx mori Aminopeptidase N Type 1 Binding Site on Bacillus thuringiensis Cry1Aa Toxin
Appl. Environ. Microbiol. 2005 71: 3966-3977. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Makiko Sakurai, Ryuichi Koga, Tsutomu Tsuchida, Xian-Ying Meng, and Takema Fukatsu

Rickettsia Symbiont in the Pea Aphid Acyrthosiphon pisum: Novel Cellular Tropism, Effect on Host Fitness, and Interaction with the Essential Symbiont Buchnera
Appl. Environ. Microbiol. 2005 71: 4069-4075. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Chun Chen and Ming-Guang Feng

Epizootiological Modeling of Pandora neoaphidis Mycosis Transmission in Myzus persicae Colonies Initiated by Primarily Infected Alates
Appl. Environ. Microbiol. 2005 71: 4104-4107. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Evolutionary and Genomic Microbiology:

Céline Lévesque, Martin Duplessis, Jessica Labonté, Steve Labrie, Christophe Fremaux, Denise Tremblay, and Sylvain Moineau

Genomic Organization and Molecular Analysis of Virulent Bacteriophage 2972 Infecting an Exopolysaccharide-Producing Streptococcus thermophilus Strain
Appl. Environ. Microbiol. 2005 71: 4057-4068. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Errata:

Jens Walter, Marco Mangold, and Gerald W. Tannock

Construction, Analysis, and ß-Glucanase Screening of a Bacterial Artificial Chromosome Library from the Large-Bowel Microbiota of Mice
Appl. Environ. Microbiol. 2005 71: 4160. [Full Text] [PDF] [Reprints and Permissions]  

Vidya R. Sridhar, Joanne E. Hughes, Dennis L. Welker, Jeffery R. Broadbent, and James L. Steele

Identification of Endopeptidase Genes from the Genomic Sequence of Lactobacillus helveticus CNRZ32 and the Role of These Genes in Hydrolysis of Model Bitter Peptides
Appl. Environ. Microbiol. 2005 71: 4161. [Full Text] [PDF] [Reprints and Permissions]  

Carla Novais, Teresa M. Coque, Helena Ferreira, João Carlos Sousa, and Luisa Peixe

Environmental Contamination with Vancomycin-Resistant Enterococci from Hospital Sewage in Portugal
Appl. Environ. Microbiol. 2005 71: 4162. [Full Text] [PDF] [Reprints and Permissions]  

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