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Minireviews:

Ronald L. Crawford

Microbial Diversity and Its Relationship to Planetary Protection
Appl. Environ. Microbiol. 2005 71: 4163-4168. [Full Text] [PDF] [Reprints and Permissions]  

Microbial Ecology:

Silja Mentula, Jaana Harmoinen, Matti Heikkilä, Elias Westermarck, Merja Rautio, Pentti Huovinen, and Eija Könönen

Comparison between Cultured Small-Intestinal and Fecal Microbiotas in Beagle Dogs
Appl. Environ. Microbiol. 2005 71: 4169-4175. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Athol V. Klieve, Melvin T. Yokoyama, Robert J. Forster, Diane Ouwerkerk, Peter A. Bain, and Erin L. Mawhinney

Naturally Occurring DNA Transfer System Associated with Membrane Vesicles in Cellulolytic Ruminococcus spp. of Ruminal Origin
Appl. Environ. Microbiol. 2005 71: 4248-4253. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

C. Cheng Kao, Susan Green, Barry Stein, and Susan S. Golden

Diel Infection of a Cyanobacterium by a Contractile Bacteriophage
Appl. Environ. Microbiol. 2005 71: 4276-4279. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Naoko Yoshida, Nobutaka Takahashi, and Akira Hiraishi

Phylogenetic Characterization of a Polychlorinated-Dioxin- Dechlorinating Microbial Community by Use of Microcosm Studies
Appl. Environ. Microbiol. 2005 71: 4325-4334. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Martin Blumenberg, Richard Seifert, Katja Nauhaus, Thomas Pape, and Walter Michaelis

In Vitro Study of Lipid Biosynthesis in an Anaerobically Methane-Oxidizing Microbial Mat
Appl. Environ. Microbiol. 2005 71: 4345-4351. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hermanni Kaartokallio, Maria Laamanen, and Kaarina Sivonen

Responses of Baltic Sea Ice and Open-Water Natural Bacterial Communities to Salinity Change
Appl. Environ. Microbiol. 2005 71: 4364-4371. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Douglas P. Lies, Maria E. Hernandez, Andreas Kappler, Randall E. Mielke, Jeffrey A. Gralnick, and Dianne K. Newman

Shewanella oneidensis MR-1 Uses Overlapping Pathways for Iron Reduction at a Distance and by Direct Contact under Conditions Relevant for Biofilms
Appl. Environ. Microbiol. 2005 71: 4414-4426. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yongqin Jiao, Andreas Kappler, Laura R. Croal, and Dianne K. Newman

Isolation and Characterization of a Genetically Tractable Photoautotrophic Fe(II)-Oxidizing Bacterium, Rhodopseudomonas palustris Strain TIE-1
Appl. Environ. Microbiol. 2005 71: 4487-4496. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yoshitake Takao, Keizo Nagasaki, Kazuyuki Mise, Tetsuro Okuno, and Daiske Honda

Isolation and Characterization of a Novel Single-Stranded RNA Virus Infectious to a Marine Fungoid Protist, Schizochytrium sp. (Thraustochytriaceae, Labyrinthulea)
Appl. Environ. Microbiol. 2005 71: 4516-4522. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Martin W. Hahn, Matthias Pöckl, and Qinglong L. Wu

Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater Pond
Appl. Environ. Microbiol. 2005 71: 4539-4547. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ashita Dhillon, Mark Lever, Karen G. Lloyd, Daniel B. Albert, Mitchell L. Sogin, and Andreas Teske

Methanogen Diversity Evidenced by Molecular Characterization of Methyl Coenzyme M Reductase A (mcrA) Genes in Hydrothermal Sediments of the Guaymas Basin
Appl. Environ. Microbiol. 2005 71: 4592-4601. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Shurong Xiang, Tandong Yao, Lizhe An, Bingliang Xu, and Junxia Wang

16S rRNA Sequences and Differences in Bacteria Isolated from the Muztag Ata Glacier at Increasing Depths
Appl. Environ. Microbiol. 2005 71: 4619-4627. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Annelie Pernthaler and Jakob Pernthaler

Diurnal Variation of Cell Proliferation in Three Bacterial Taxa from Coastal North Sea Waters
Appl. Environ. Microbiol. 2005 71: 4638-4644. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kaouther Ben-Amor, Hans Heilig, Hauke Smidt, Elaine E. Vaughan, Tjakko Abee, and Willem M. de Vos

Genetic Diversity of Viable, Injured, and Dead Fecal Bacteria Assessed by Fluorescence-Activated Cell Sorting and 16S rRNA Gene Analysis
Appl. Environ. Microbiol. 2005 71: 4679-4689. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Holly M. Simon, Courtney E. Jahn, Luke T. Bergerud, Marek K. Sliwinski, Paul J. Weimer, David K. Willis, and Robert M. Goodman

Cultivation of Mesophilic Soil Crenarchaeotes in Enrichment Cultures from Plant Roots
Appl. Environ. Microbiol. 2005 71: 4751-4760. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Karin Simu, Karin Holmfeldt, Ulla Li Zweifel, and Åke Hagström

Culturability and Coexistence of Colony-Forming and Single-Cell Marine Bacterioplankton
Appl. Environ. Microbiol. 2005 71: 4793-4800. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andrew P. Leis, Sven Schlicher, Hilmar Franke, and Martin Strathmann

Optically Transparent Porous Medium for Nondestructive Studies of Microbial Biofilm Architecture and Transport Dynamics
Appl. Environ. Microbiol. 2005 71: 4801-4808. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Dominic Papineau, Jeffrey J. Walker, Stephen J. Mojzsis, and Norman R. Pace

Composition and Structure of Microbial Communities from Stromatolites of Hamelin Pool in Shark Bay, Western Australia
Appl. Environ. Microbiol. 2005 71: 4822-4832. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

R. J. Atterbury, E. Dillon, C. Swift, P. L. Connerton, J. A. Frost, C. E. R. Dodd, C. E. D. Rees, and I. F. Connerton

Correlation of Campylobacter Bacteriophage with Reduced Presence of Hosts in Broiler Chicken Ceca
Appl. Environ. Microbiol. 2005 71: 4885-4887. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ulysses Lins, Martha R. McCartney, Marcos Farina, Richard B. Frankel, and Peter R. Buseck

Habits of Magnetosome Crystals in Coccoid Magnetotactic Bacteria
Appl. Environ. Microbiol. 2005 71: 4902-4905. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

E. O. Burton, H. W. Read, M. C. Pellitteri, and W. J. Hickey

Identification of Acyl-Homoserine Lactone Signal Molecules Produced by Nitrosomonas europaea Strain Schmidt
Appl. Environ. Microbiol. 2005 71: 4906-4909. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yanping Wang, Gui-Rong Wang, Nadja B. Shoemaker, Terence R. Whitehead, and Abigail A. Salyers

Distribution of the ermG Gene among Bacterial Isolates from Porcine Intestinal Contents
Appl. Environ. Microbiol. 2005 71: 4930-4934. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Enzymology and Protein Engineering:

Nuchanat Wutipraditkul, Rungaroon Waditee, Aran Incharoensakdi, Takashi Hibino, Yoshito Tanaka, Tatsunosuke Nakamura, Masamitsu Shikata, Tetsuko Takabe, and Teruhiro Takabe

Halotolerant Cyanobacterium Aphanothece halophytica Contains NapA-Type Na⁺/H⁺ Antiporters with Novel Ion Specificity That Are Involved in Salt Tolerance at Alkaline pH
Appl. Environ. Microbiol. 2005 71: 4176-4184. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hyungdon Yun, Bum-Yeol Hwang, Jae-Hun Lee, and Byung-Gee Kim

Use of Enrichment Culture for Directed Evolution of the Vibrio fluvialis JS17 -Transaminase, Which Is Resistant to Product Inhibition by Aliphatic Ketones
Appl. Environ. Microbiol. 2005 71: 4220-4224. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Stephanie Shipkowski and Jean E. Brenchley

Characterization of an Unusual Cold-Active ß-Glucosidase Belonging to Family 3 of the Glycoside Hydrolases from the Psychrophilic Isolate Paenibacillus sp. Strain C7
Appl. Environ. Microbiol. 2005 71: 4225-4232. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Haruhiko Sakuraba, Ryushi Kawakami, and Toshihisa Ohshima

First Archaeal Inorganic Polyphosphate/ATP-Dependent NAD Kinase, from Hyperthermophilic Archaeon Pyrococcus horikoshii: Cloning, Expression, and Characterization
Appl. Environ. Microbiol. 2005 71: 4352-4358. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yukari Sato, Marta Monincová, Radka Chaloupková, Zbynek Prokop, Yoshiyuki Ohtsubo, Kiwamu Minamisawa, Masataka Tsuda, Jirí Damborsky, and Yuji Nagata

Two Rhizobial Strains, Mesorhizobium loti MAFF303099 and Bradyrhizobium japonicum USDA110, Encode Haloalkane Dehalogenases with Novel Structures and Substrate Specificities
Appl. Environ. Microbiol. 2005 71: 4372-4379. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Haruo Misono, Hiroshi Maeda, Kouiti Tuda, Sakuko Ueshima, Naoto Miyazaki, and Shinji Nagata

Characterization of an Inducible Phenylserine Aldolase from Pseudomonas putida 24-1
Appl. Environ. Microbiol. 2005 71: 4602-4609. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Valeria Cafaro, Eugenio Notomista, Paola Capasso, and Alberto Di Donato

Regiospecificity of Two Multicomponent Monooxygenases from Pseudomonas stutzeri OX1: Molecular Basis for Catabolic Adaptation of This Microorganism to Methylated Aromatic Compounds
Appl. Environ. Microbiol. 2005 71: 4736-4743. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Valeria Cafaro, Eugenio Notomista, Paola Capasso, and Alberto Di Donato

Mutation of Glutamic Acid 103 of Toluene o-Xylene Monooxygenase as a Means To Control the Catabolic Efficiency of a Recombinant Upper Pathway for Degradation of Methylated Aromatic Compounds
Appl. Environ. Microbiol. 2005 71: 4744-4750. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Food Microbiology:

Alex Yeow-Lim Teo and Hai-Meng Tan

Inhibition of Clostridium perfringens by a Novel Strain of Bacillus subtilis Isolated from the Gastrointestinal Tracts of Healthy Chickens
Appl. Environ. Microbiol. 2005 71: 4185-4190. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Paola Lavermicocca, Francesca Valerio, Stella Lisa Lonigro, Maria De Angelis, Lorenzo Morelli, Maria Luisa Callegari, Carlo G. Rizzello, and Angelo Visconti

Study of Adhesion and Survival of Lactobacilli and Bifidobacteria on Table Olives with the Aim of Formulating a New Probiotic Food
Appl. Environ. Microbiol. 2005 71: 4233-4240. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

D. J. M. Mouwen, M. J. B. M. Weijtens, R. Capita, C. Alonso-Calleja, and M. Prieto

Discrimination of Enterobacterial Repetitive Intergenic Consensus PCR Types of Campylobacter coli and Campylobacter jejuni by Fourier Transform Infrared Spectroscopy
Appl. Environ. Microbiol. 2005 71: 4318-4324. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Joanna Koort, Anna Murros, Tom Coenye, Susanna Eerola, Peter Vandamme, Antti Sukura, and Johanna Björkroth

Lactobacillus oligofermentans sp. nov., Associated with Spoilage of Modified-Atmosphere-Packaged Poultry Products
Appl. Environ. Microbiol. 2005 71: 4400-4406. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ramakrishna Nannapaneni, Robert Story, Keith C. Wiggins, and Michael G. Johnson

Concurrent Quantitation of Total Campylobacter and Total Ciprofloxacin-Resistant Campylobacter Loads in Rinses from Retail Raw Chicken Carcasses from 2001 to 2003 by Direct Plating at 42°C
Appl. Environ. Microbiol. 2005 71: 4510-4515. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Olivia McAuliffe, Raul J. Cano, and Todd R. Klaenhammer

Genetic Analysis of Two Bile Salt Hydrolase Activities in Lactobacillus acidophilus NCFM
Appl. Environ. Microbiol. 2005 71: 4925-4929. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Genetics and Molecular Biology:

Isabel Aranda-Olmedo, Juan L. Ramos, and Silvia Marqués

Integration of Signals through Crc and PtsN in Catabolite Repression of Pseudomonas putida TOL Plasmid pWW0
Appl. Environ. Microbiol. 2005 71: 4191-4198. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yasuhiro Nishida, Kyoko Adachi, Hiroaki Kasai, Yoshikazu Shizuri, Kazutoshi Shindo, Akiyoshi Sawabe, Sadao Komemushi, Wataru Miki, and Norihiko Misawa

Elucidation of a Carotenoid Biosynthesis Gene Cluster Encoding a Novel Enzyme, 2,2'-ß-Hydroxylase, from Brevundimonas sp. Strain SD212 and Combinatorial Biosynthesis of New or Rare Xanthophylls
Appl. Environ. Microbiol. 2005 71: 4286-4296. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Niall D. O'Leary, Kevin E. O'Connor, Patrick Ward, Miriam Goff, and Alan D. W. Dobson

Genetic Characterization of Accumulation of Polyhydroxyalkanoate from Styrene in Pseudomonas putida CA-3
Appl. Environ. Microbiol. 2005 71: 4380-4387. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jörg Overhage, Mirle Schemionek, Jeremy S. Webb, and Bernd H. A. Rehm

Expression of the psl Operon in Pseudomonas aeruginosa PAO1 Biofilms: PslA Performs an Essential Function in Biofilm Formation
Appl. Environ. Microbiol. 2005 71: 4407-4413. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

H. B. Yu, Y. L. Zhang, Y. L. Lau, F. Yao, S. Vilches, S. Merino, J. M. Tomas, S. P. Howard, and K. Y. Leung

Identification and Characterization of Putative Virulence Genes and Gene Clusters in Aeromonas hydrophila PPD134/91
Appl. Environ. Microbiol. 2005 71: 4469-4477. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Elsa Leitão, Fredrik Oxelfelt, Paulo Oliveira, Pedro Moradas-Ferreira, and Paula Tamagnini

Analysis of the hupSL Operon of the Nonheterocystous Cyanobacterium Lyngbya majuscula CCAP 1446/4: Regulation of Transcription and Expression under a Light-Dark Regimen
Appl. Environ. Microbiol. 2005 71: 4567-4576. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Dean Scholl, Sankar Adhya, and Carl Merril

Escherichia coli K1's Capsule Is a Barrier to Bacteriophage T7
Appl. Environ. Microbiol. 2005 71: 4872-4874. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andreas Janka, Georg Becker, Anne-Katharina Sonntag, Martina Bielaszewska, Ulrich Dobrindt, and Helge Karch

Presence and Characterization of a Mosaic Genomic Island Which Distinguishes Sorbitol-Fermenting Enterohemorrhagic Escherichia coli O157:H^– from E. coli O157:H7
Appl. Environ. Microbiol. 2005 71: 4875-4878. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Lisa M. Durso, James L. Bono, and James E. Keen

Molecular Serotyping of Escherichia coli O26:H11
Appl. Environ. Microbiol. 2005 71: 4941-4944. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Biodegradation:

Diane Fournier, Sandra Trott, Jalal Hawari, and Jim Spain

Metabolism of the Aliphatic Nitramine 4-Nitro-2,4-Diazabutanal by Methylobacterium sp. Strain JS178
Appl. Environ. Microbiol. 2005 71: 4199-4202. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Inés García-Peña, Sergio Hernández, Richard Auria, and Sergio Revah

Correlation of Biological Activity and Reactor Performance in Biofiltration of Toluene with the Fungus Paecilomyces variotii CBS115145
Appl. Environ. Microbiol. 2005 71: 4280-4285. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Plant Microbiology:

Gabriele Berg, Christin Zachow, Jana Lottmann, Monika Götz, Rodrigo Costa, and Kornelia Smalla

Impact of Plant Species and Site on Rhizosphere-Associated Fungi Antagonistic to Verticillium dahliae Kleb.
Appl. Environ. Microbiol. 2005 71: 4203-4213. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Seung-Hun Baek and James P. Shapleigh

Expression of Nitrite and Nitric Oxide Reductases in Free-Living and Plant-Associated Agrobacterium tumefaciens C58 Cells
Appl. Environ. Microbiol. 2005 71: 4427-4436. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

H. Hasegawa, A. Chatterjee, Y. Cui, and A. K. Chatterjee

Elevated Temperature Enhances Virulence of Erwinia carotovora subsp. carotovora Strain EC153 to Plants and Stimulates Production of the Quorum Sensing Signal, N-Acyl Homoserine Lactone, and Extracellular Proteins
Appl. Environ. Microbiol. 2005 71: 4655-4663. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Claire Veneault-Fourrey, Richard Laugé, and Thierry Langin

Nonpathogenic Strains of Colletotrichum lindemuthianum Trigger Progressive Bean Defense Responses during Appressorium-Mediated Penetration
Appl. Environ. Microbiol. 2005 71: 4761-4770. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hong Lin, Edwin L. Civerolo, Rong Hu, Samuel Barros, Marta Francis, and M. Andrew Walker

Multilocus Simple Sequence Repeat Markers for Differentiating Strains and Evaluating Genetic Diversity of Xylella fastidiosa
Appl. Environ. Microbiol. 2005 71: 4888-4892. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Delphine Capela, Sébastien Carrere, and Jacques Batut

Transcriptome-Based Identification of the Sinorhizobium meliloti NodD1 Regulon
Appl. Environ. Microbiol. 2005 71: 4910-4913. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Methods:

Abu Sadeque Md. Selim, Piyanuch Boonkumklao, Teruo Sone, Apinya Assavanig, Masaru Wada, and Atsushi Yokota

Development and Assessment of a Real-Time PCR Assay for Rapid and Sensitive Detection of a Novel Thermotolerant Bacterium, Lactobacillus thermotolerans, in Chicken Feces
Appl. Environ. Microbiol. 2005 71: 4214-4219. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Maite Muniesa, Anicet R. Blanch, Francisco Lucena, and Juan Jofre

Bacteriophages May Bias Outcome of Bacterial Enrichment Cultures
Appl. Environ. Microbiol. 2005 71: 4269-4275. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Seizaburo Shiraga, Masayuki Kawakami, Masaji Ishiguro, and Mitsuyoshi Ueda

Enhanced Reactivity of Rhizopus oryzae Lipase Displayed on Yeast Cell Surfaces in Organic Solvents: Potential as a Whole-Cell Biocatalyst in Organic Solvents
Appl. Environ. Microbiol. 2005 71: 4335-4338. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

John Sanseverino, Rakesh K. Gupta, Alice C. Layton, Stacey S. Patterson, Steven A. Ripp, Leslie Saidak, Michael L. Simpson, T. Wayne Schultz, and Gary S. Sayler

Use of Saccharomyces cerevisiae BLYES Expressing Bacterial Bioluminescence for Rapid, Sensitive Detection of Estrogenic Compounds
Appl. Environ. Microbiol. 2005 71: 4455-4460. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jed A. Fuhrman, Xiaolin Liang, and Rachel T. Noble

Rapid Detection of Enteroviruses in Small Volumes of Natural Waters by Real-Time Quantitative Reverse Transcriptase PCR
Appl. Environ. Microbiol. 2005 71: 4523-4530. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Stefan J. Green and Dror Minz

Suicide Polymerase Endonuclease Restriction, a Novel Technique for Enhancing PCR Amplification of Minor DNA Templates
Appl. Environ. Microbiol. 2005 71: 4721-4727. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Florence Hommais, Sabrina Pereira, Cécile Acquaviva, Patricia Escobar-Páramo, and Erick Denamur

Single-Nucleotide Polymorphism Phylotyping of Escherichia coli
Appl. Environ. Microbiol. 2005 71: 4784-4792. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Hikaru Suenaga, Rui Liu, Yuko Shiramasa, and Takahiro Kanagawa

Novel Approach to Quantitative Detection of Specific rRNA in a Microbial Community, Using Catalytic DNA
Appl. Environ. Microbiol. 2005 71: 4879-4884. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Josh D. Neufeld and William W. Mohn

Fluorophore-Labeled Primers Improve the Sensitivity, Versatility, and Normalization of Denaturing Gradient Gel Electrophoresis
Appl. Environ. Microbiol. 2005 71: 4893-4896. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Susan Mills, Aidan Coffey, Colin Hill, Gerald F. Fitzgerald, Olivia McAuliffe, and R. Paul Ross

Insertional Inactivation of Determinants for Mg²⁺ and Co²⁺ Transport as a Tool for Screening Recombinant Lactococcus Species Clones
Appl. Environ. Microbiol. 2005 71: 4897-4901. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Ethel E. Apolinario, Karin M. Jackson, and Kevin R. Sowers

Development of a Plasmid-Mediated Reporter System for In Vivo Monitoring of Gene Expression in the Archaeon Methanosarcina acetivorans
Appl. Environ. Microbiol. 2005 71: 4914-4918. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Chitrita DebRoy, Pina M. Fratamico, Elisabeth Roberts, Michael A. Davis, and Yanhong Liu

Development of PCR Assays Targeting Genes in O-Antigen Gene Clusters for Detection and Identification of Escherichia coli O45 and O55 Serogroups
Appl. Environ. Microbiol. 2005 71: 4919-4924. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

R. Bouhenni, A. Gehrke, and D. Saffarini

Identification of Genes Involved in Cytochrome c Biogenesis in Shewanella oneidensis, Using a Modified mariner Transposon
Appl. Environ. Microbiol. 2005 71: 4935-4937. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Public Health Microbiology:

Helena M. Stack, Roy D. Sleator, Megan Bowers, Colin Hill, and Cormac G. M. Gahan

Role for HtrA in Stress Induction and Virulence Potential in Listeria monocytogenes
Appl. Environ. Microbiol. 2005 71: 4241-4247. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jianlin Jiang, Kerri A. Alderisio, and Lihua Xiao

Distribution of Cryptosporidium Genotypes in Storm Event Water Samples from Three Watersheds in New York
Appl. Environ. Microbiol. 2005 71: 4446-4454. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

W. Ahmed, R. Neller, and M. Katouli

Host Species-Specific Metabolic Fingerprint Database for Enterococci and Escherichia coli and Its Application To Identify Sources of Fecal Contamination in Surface Waters
Appl. Environ. Microbiol. 2005 71: 4461-4468. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Harry B. Hines, Frank Lebeda, Martha Hale, and Ernst E. Brueggemann

Characterization of Botulinum Progenitor Toxins by Mass Spectrometry
Appl. Environ. Microbiol. 2005 71: 4478-4486. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Wei Wang, Leslie M. Shor, Eugene J. LeBoeuf, John P. Wikswo, and David S. Kosson

Mobility of Protozoa through Narrow Channels
Appl. Environ. Microbiol. 2005 71: 4628-4637. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Anwar Huq, R. Bradley Sack, Azhar Nizam, Ira M. Longini, G. Balakrish Nair, Afsar Ali, J. Glenn Morris, Jr., M. N. Huda Khan, A. Kasem Siddique, Mohammed Yunus, M. John Albert, David A. Sack, and Rita R. Colwell

Critical Factors Influencing the Occurrence of Vibrio cholerae in the Environment of Bangladesh
Appl. Environ. Microbiol. 2005 71: 4645-4654. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Chunsun Ryu, Kyunghee Lee, Han-Jun Hawng, Cheon-Kwon Yoo, Won-Keun Seong, and Hee-Bok Oh

Molecular Characterization of Korean Bacillus anthracis Isolates by Amplified Fragment Length Polymorphism Analysis and Multilocus Variable-Number Tandem Repeat Analysis
Appl. Environ. Microbiol. 2005 71: 4664-4671. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Clarivel Lasalde, Roberto Rodríguez, and Gary A. Toranzos

Statistical Analyses: Possible Reasons for Unreliability of Source Tracking Efforts
Appl. Environ. Microbiol. 2005 71: 4690-4695. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Graeme A. O'May, Nigel Reynolds, and George T. Macfarlane

Effect of pH on an In Vitro Model of Gastric Microbiota in Enteral Nutrition Patients
Appl. Environ. Microbiol. 2005 71: 4777-4783. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hanan Gancz, Orly Niderman-Meyer, Meir Broza, Yechezkel Kashi, and Eyal Shimoni

Adhesion of Vibrio cholerae to Granular Starches
Appl. Environ. Microbiol. 2005 71: 4850-4855. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

C. Andrew Carson, Jessica M. Christiansen, Helen Yampara-Iquise, Verel W. Benson, Claire Baffaut, Jerri V. Davis, Robert R. Broz, William B. Kurtz, Wendi M. Rogers, and William H. Fales

Specificity of a Bacteroides thetaiotaomicron Marker for Human Feces
Appl. Environ. Microbiol. 2005 71: 4945-4949. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Invertebrate Microbiology:

Oihane Simón, Trevor Williams, Miguel López-Ferber, and Primitivo Caballero

Functional Importance of Deletion Mutant Genotypes in an Insect Nucleopolyhedrovirus Population
Appl. Environ. Microbiol. 2005 71: 4254-4262. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Antonio Marques, Thi Dinh, Christos Ioakeimidis, Geert Huys, Jean Swings, Willy Verstraete, Jean Dhont, Patrick Sorgeloos, and Peter Bossier

Effects of Bacteria on Artemia franciscana Cultured in Different Gnotobiotic Environments
Appl. Environ. Microbiol. 2005 71: 4307-4317. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Markus Egert, Ulrich Stingl, Lars Dyhrberg Bruun, Bianca Pommerenke, Andreas Brune, and Michael W. Friedrich

Structure and Topology of Microbial Communities in the Major Gut Compartments of Melolontha melolontha Larvae (Coleoptera: Scarabaeidae)
Appl. Environ. Microbiol. 2005 71: 4556-4566. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

A. C. Darby, S. M. Chandler, S. C. Welburn, and A. E. Douglas

Aphid-Symbiotic Bacteria Cultured in Insect Cell Lines
Appl. Environ. Microbiol. 2005 71: 4833-4839. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Physiology and Biotechnology:

Katariina Majander, Timo K. Korhonen, and Benita Westerlund-Wikström

Simultaneous Display of Multiple Foreign Peptides in the FliD Capping and FliC Filament Proteins of the Escherichia coli Flagellum
Appl. Environ. Microbiol. 2005 71: 4263-4268. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Christopher T. Nomura, Kazunori Taguchi, Zhihua Gan, Kazuhiro Kuwabara, Tomoyo Tanaka, Kazuma Takase, and Yoshiharu Doi

Expression of 3-Ketoacyl-Acyl Carrier Protein Reductase (fabG) Genes Enhances Production of Polyhydroxyalkanoate Copolymer from Glucose in Recombinant Escherichia coli JM109
Appl. Environ. Microbiol. 2005 71: 4297-4306. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Tiziana Lodi, Barbara Neglia, and Claudia Donnini

Secretion of Human Serum Albumin by Kluyveromyces lactis Overexpressing KlPDI1 and KlERO1
Appl. Environ. Microbiol. 2005 71: 4359-4363. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gang Cheng, Nir Shapir, Michael J. Sadowsky, and Lawrence P. Wackett

Allophanate Hydrolase, Not Urease, Functions in Bacterial Cyanuric Acid Metabolism
Appl. Environ. Microbiol. 2005 71: 4437-4445. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

GuoBin Shan, JianMin Xing, HuaiYing Zhang, and HuiZhou Liu

Biodesulfurization of Dibenzothiophene by Microbial Cells Coated with Magnetite Nanoparticles
Appl. Environ. Microbiol. 2005 71: 4497-4502. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sumati Murli, Karen S. MacMillan, Zhihao Hu, Gary W. Ashley, Steven D. Dong, James T. Kealey, Christopher D. Reeves, and Jonathan Kennedy

Chemobiosynthesis of Novel 6-Deoxyerythronolide B Analogues by Mutation of the Loading Module of 6-Deoxyerythronolide B Synthase 1
Appl. Environ. Microbiol. 2005 71: 4503-4509. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Femke I. C. Mensonides, Stanley Brul, Frans M. Klis, Klaas J. Hellingwerf, and M. Joost Teixeira de Mattos

Activation of the Protein Kinase C1 Pathway upon Continuous Heat Stress in Saccharomyces cerevisiae Is Triggered by an Intracellular Increase in Osmolarity due to Trehalose Accumulation
Appl. Environ. Microbiol. 2005 71: 4531-4538. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Valérie Leclère, Max Béchet, Akram Adam, Jean-Sébastien Guez, Bernard Wathelet, Marc Ongena, Philippe Thonart, Frédérique Gancel, Marlène Chollet-Imbert, and Philippe Jacques

Mycosubtilin Overproduction by Bacillus subtilis BBG100 Enhances the Organism's Antagonistic and Biocontrol Activities
Appl. Environ. Microbiol. 2005 71: 4577-4584. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Daniela Cernat Bondar, Jean-Marie Beckerich, and Pascal Bonnarme

Involvement of a Branched-Chain Aminotransferase in Production of Volatile Sulfur Compounds in Yarrowia lipolytica
Appl. Environ. Microbiol. 2005 71: 4585-4591. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

David M. Stevenson and Paul J. Weimer

Expression of 17 Genes in Clostridium thermocellum ATCC 27405 during Fermentation of Cellulose or Cellobiose in Continuous Culture
Appl. Environ. Microbiol. 2005 71: 4672-4678. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Elisabete Silva, Ana Rita Marques, Arsénio Mendes Fialho, Ana Teresa Granja, and Isabel Sá-Correia

Proteins Encoded by Sphingomonas elodea ATCC 31461 rmlA and ugpG Genes, Involved in Gellan Gum Biosynthesis, Exhibit both dTDP- and UDP-Glucose Pyrophosphorylase Activities
Appl. Environ. Microbiol. 2005 71: 4703-4712. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yoshihide Makino, Kousuke Inoue, Tohru Dairi, and Nobuya Itoh

Engineering of Phenylacetaldehyde Reductase for Efficient Substrate Conversion in Concentrated 2-Propanol
Appl. Environ. Microbiol. 2005 71: 4713-4720. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mary Jo Kirisits, Lynne Prost, Melissa Starkey, and Matthew R. Parsek

Characterization of Colony Morphology Variants Isolated from Pseudomonas aeruginosa Biofilms
Appl. Environ. Microbiol. 2005 71: 4809-4821. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andreas Rascher, Zhihao Hu, Greg O. Buchanan, Ralph Reid, and C. Richard Hutchinson

Insights into the Biosynthesis of the Benzoquinone Ansamycins Geldanamycin and Herbimycin, Obtained by Gene Sequencing and Disruption
Appl. Environ. Microbiol. 2005 71: 4862-4871. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Environmental Microbiology:

Doris Rittmann, Ulrike Sorger-Herrmann, and Volker F. Wendisch

Phosphate Starvation-Inducible Gene ushA Encodes a 5' Nucleotidase Required for Growth of Corynebacterium glutamicum on Media with Nucleotides as the Phosphorus Source
Appl. Environ. Microbiol. 2005 71: 4339-4344. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Naghma Naz, Hilary K. Young, Nuzhat Ahmed, and Geoffrey M. Gadd

Cadmium Accumulation and DNA Homology with Metal Resistance Genes in Sulfate-Reducing Bacteria
Appl. Environ. Microbiol. 2005 71: 4610-4618. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

John D. Coates, Kimberly A. Cole, Urania Michaelidou, Jennifer Patrick, Michael J. McInerney, and Laurie A. Achenbach

Biological Control of Hog Waste Odor through Stimulated Microbial Fe(III) Reduction
Appl. Environ. Microbiol. 2005 71: 4728-4735. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yi-Cheng Sun, Yan-Cheng Chen, Zhe-Xian Tian, Feng-Mei Li, Xin-Yue Wang, Jing Zhang, Zhen-Long Xiao, Min Lin, Niamh Gilmartin, David N. Dowling, and Yi-Ping Wang

Novel AroA with High Tolerance to Glyphosate, Encoded by a Gene of Pseudomonas putida 4G-1 Isolated from an Extremely Polluted Environment in China
Appl. Environ. Microbiol. 2005 71: 4771-4776. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Evolutionary and Genomic Microbiology:

Cesar A. Morales, Steffen Porwollik, Jonathan G. Frye, Hailu Kinde, Michael McClelland, and Jean Guard-Bouldin

Correlation of Phenotype with the Genotype of Egg-Contaminating Salmonella enterica Serovar Enteritidis
Appl. Environ. Microbiol. 2005 71: 4388-4399. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andreas Schirmer, Rishali Gadkari, Christopher D. Reeves, Fadia Ibrahim, Edward F. DeLong, and C. Richard Hutchinson

Metagenomic Analysis Reveals Diverse Polyketide Synthase Gene Clusters in Microorganisms Associated with the Marine Sponge Discodermia dissoluta
Appl. Environ. Microbiol. 2005 71: 4840-4849. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Mycology:

Makoto Yoshida, Kiyohiko Igarashi, Masahisa Wada, Satoshi Kaneko, Norio Suzuki, Hirotoshi Matsumura, Nobuhumi Nakamura, Hiroyuki Ohno, and Masahiro Samejima

Characterization of Carbohydrate-Binding Cytochrome b₅₆₂ from the White-Rot Fungus Phanerochaete chrysosporium
Appl. Environ. Microbiol. 2005 71: 4548-4555. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Angel Medina, Rufino Mateo, Laura López-Ocaña, Francisco Manuel Valle-Algarra, and Misericordia Jiménez

Study of Spanish Grape Mycobiota and Ochratoxin A Production by Isolates of Aspergillus tubingensis and Other Members of Aspergillus Section Nigri
Appl. Environ. Microbiol. 2005 71: 4696-4702. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mamoru Ohneda, Manabu Arioka, and Katsuhiko Kitamoto

Isolation and Characterization of Aspergillus oryzae Vacuolar Protein Sorting Mutants
Appl. Environ. Microbiol. 2005 71: 4856-4861. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Daniel D. Mosel, Raluca Dumitru, Jacob M. Hornby, Audrey L. Atkin, and Kenneth W. Nickerson

Farnesol Concentrations Required To Block Germ Tube Formation in Candida albicans in the Presence and Absence of Serum
Appl. Environ. Microbiol. 2005 71: 4938-4940. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

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