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Minireviews:

Stéphane Compant, Brion Duffy, Jerzy Nowak, Christophe Clément, and Essaïd Ait Barka

Use of Plant Growth-Promoting Bacteria for Biocontrol of Plant Diseases: Principles, Mechanisms of Action, and Future Prospects
Appl. Environ. Microbiol. 2005 71: 4951-4959. [Full Text] [PDF] [Reprints and Permissions]  

Methods:

Catherine Fearnley, Stephen L. W. On, Branko Kokotovic, Georgina Manning, Tom Cheasty, and Diane G. Newell

Application of Fluorescent Amplified Fragment Length Polymorphism for Comparison of Human and Animal Isolates of Yersinia enterocolitica
Appl. Environ. Microbiol. 2005 71: 4960-4965. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yung-Hun Yang, Hwang-Soo Joo, Kwangwon Lee, Kwang-Kyung Liou, Hei-Chan Lee, Jae-Kyung Sohng, and Byung-Gee Kim

Novel Method for Detection of Butanolides in Streptomyces coelicolor Culture Broth, Using a His-Tagged Receptor (ScbR) and Mass Spectrometry
Appl. Environ. Microbiol. 2005 71: 5050-5055. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

F. L. Thompson, D. Gevers, C. C. Thompson, P. Dawyndt, S. Naser, B. Hoste, C. B. Munn, and J. Swings

Phylogeny and Molecular Identification of Vibrios on the Basis of Multilocus Sequence Analysis
Appl. Environ. Microbiol. 2005 71: 5107-5115. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kurt Wagschal, Diana Franqui-Espiet, Charles C. Lee, George H. Robertson, and Dominic W. S. Wong

Enzyme-Coupled Assay for ß-Xylosidase Hydrolysis of Natural Substrates
Appl. Environ. Microbiol. 2005 71: 5318-5323. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jaroslaw Letowski, Alejandra Bravo, Roland Brousseau, and Luke Masson

Assessment of cry1 Gene Contents of Bacillus thuringiensis Strains by Use of DNA Microarrays
Appl. Environ. Microbiol. 2005 71: 5391-5398. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Takehiko Kenzaka, Ai Ishidoshiro, Nobuyasu Yamaguchi, Katsuji Tani, and Masao Nasu

rRNA Sequence-Based Scanning Electron Microscopic Detection of Bacteria
Appl. Environ. Microbiol. 2005 71: 5523-5531. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Heath E. O'Brien, Jeri Lynn Parrent, Jason A. Jackson, Jean-Marc Moncalvo, and Rytas Vilgalys

Fungal Community Analysis by Large-Scale Sequencing of Environmental Samples
Appl. Environ. Microbiol. 2005 71: 5544-5550. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Keith R. Shockley, Kevin L. Scott, Marybeth A. Pysz, Shannon B. Conners, Matthew R. Johnson, Clemente I. Montero, Russell D. Wolfinger, and Robert M. Kelly

Genome-Wide Transcriptional Variation within and between Steady States for Continuous Growth of the Hyperthermophile Thermotoga Maritima
Appl. Environ. Microbiol. 2005 71: 5572-5576. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kim E. Sapsford, Chris R. Taitt, Nicole Loo, and Frances S. Ligler

Biosensor Detection of Botulinum Toxoid A and Staphylococcal Enterotoxin B in Food
Appl. Environ. Microbiol. 2005 71: 5590-5592. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Chung-Te Lee, Carmen Amaro, Eva Sanjuán, and Lien-I Hor

Identification of DNA Sequences Specific for Vibrio vulnificus Biotype 2 Strains by Suppression Subtractive Hybridization
Appl. Environ. Microbiol. 2005 71: 5593-5597. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Physiology and Biotechnology:

Nicole Wagner, Quang Hon Tran, Hanno Richter, Paul M. Selzer, and Gottfried Unden

Pyruvate Fermentation by Oenococcus oeni and Leuconostoc mesenteroides and Role of Pyruvate Dehydrogenase in Anaerobic Fermentation
Appl. Environ. Microbiol. 2005 71: 4966-4971. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Quande Wei, Young Soo Kim, Jeong Hyun Seo, Woong Sik Jang, In Hee Lee, and Hyung Joon Cha

Facilitation of Expression and Purification of an Antimicrobial Peptide by Fusion with Baculoviral Polyhedrin in Escherichia coli
Appl. Environ. Microbiol. 2005 71: 5038-5043. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Madalena Salema-Oom, Vera Valadão Pinto, Paula Gonçalves, and Isabel Spencer-Martins

Maltotriose Utilization by Industrial Saccharomyces Strains: Characterization of a New Member of the -Glucoside Transporter Family
Appl. Environ. Microbiol. 2005 71: 5044-5049. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yi Yu, Linquan Bai, Kazuyuki Minagawa, Xiaohong Jian, Lei Li, Jialiang Li, Shuangya Chen, Erhu Cao, Taifo Mahmud, Heinz G. Floss, Xiufen Zhou, and Zixin Deng

Gene Cluster Responsible for Validamycin Biosynthesis in Streptomyces hygroscopicus subsp. jinggangensis 5008
Appl. Environ. Microbiol. 2005 71: 5066-5076. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Zhili He, Liyou Wu, Matthew W. Fields, and Jizhong Zhou

Use of Microarrays with Different Probe Sizes for Monitoring Gene Expression
Appl. Environ. Microbiol. 2005 71: 5154-5162. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

Lindsey E. Nielsen, Dana R. Kadavy, Soumitra Rajagopal, Rhae Drijber, and Kenneth W. Nickerson

Survey of Extreme Solvent Tolerance in Gram-Positive Cocci: Membrane Fatty Acid Changes in Staphylococcus haemolyticus Grown in Toluene
Appl. Environ. Microbiol. 2005 71: 5171-5176. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Lucile Plourde-Owobi, Delphine Seguin, Marie-Anne Baudin, Catherine Moste, and Bachra Rokbi

Molecular Characterization of Clostridium tetani Strains by Pulsed-Field Gel Electrophoresis and Colony PCR
Appl. Environ. Microbiol. 2005 71: 5604-5606. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yajun Yan, Abhijeet Kohli, and Mattheos A. G. Koffas

Biosynthesis of Natural Flavanones in Saccharomyces cerevisiae
Appl. Environ. Microbiol. 2005 71: 5610-5613. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gi-Seong Moon, Yu-Ryang Pyun, Myeong Soo Park, Geun Eog Ji, and Wang June Kim

Secretion of Recombinant Pediocin PA-1 by Bifidobacterium longum, Using the Signal Sequence for Bifidobacterial -Amylase
Appl. Environ. Microbiol. 2005 71: 5630-5632. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Claudia Etchebehere and James Tiedje

Presence of Two Different Active nirS Nitrite Reductase Genes in a Denitrifying Thauera sp. from a High-Nitrate-Removal-Rate Reactor
Appl. Environ. Microbiol. 2005 71: 5642-5645. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Microbial Ecology:

Hugo A. Castillo-Gonzalez and Mary Ann Bruns

Dissimilatory Iron Reduction and Odor Indicator Abatement by Biofilm Communities in Swine Manure Microcosms
Appl. Environ. Microbiol. 2005 71: 4972-4978. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hongyan Wu, Kunshan Gao, Virginia E. Villafañe, Teruo Watanabe, and E. Walter Helbling

Effects of Solar UV Radiation on Morphology and Photosynthesis of Filamentous Cyanobacterium Arthrospira platensis
Appl. Environ. Microbiol. 2005 71: 5004-5013. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Aaike De Wever, Koenraad Muylaert, Katleen Van der Gucht, Samuel Pirlot, Christine Cocquyt, Jean-Pierre Descy, Pierre-Denis Plisnier, and Wim Vyverman

Bacterial Community Composition in Lake Tanganyika: Vertical and Horizontal Heterogeneity
Appl. Environ. Microbiol. 2005 71: 5029-5037. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

M. Schallenberg, P. J. Bremer, S. Henkel, A. Launhardt, and C. W. Burns

Survival of Campylobacter jejuni in Water: Effect of Grazing by the Freshwater Crustacean Daphnia carinata (Cladocera)
Appl. Environ. Microbiol. 2005 71: 5085-5088. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Christèle Humblot, Bruno Combourieu, Marja-Liisa Väisänen, Jean-Pierre Furet, Anne-Marie Delort, and Sylvie Rabot

¹H Nuclear Magnetic Resonance Spectroscopy-Based Studies of the Metabolism of Food-Borne Carcinogen 2-Amino-3-Methylimidazo[4,5-f]Quinoline by Human Intestinal Microbiota
Appl. Environ. Microbiol. 2005 71: 5116-5123. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Y. Chen, S. Sela, M. Gamburg, R. Pinto, and Z. G. Weinberg

Fate of Escherichia coli during Ensiling of Wheat and Corn
Appl. Environ. Microbiol. 2005 71: 5163-5170. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Linda Tonk, Petra M. Visser, Guntram Christiansen, Elke Dittmann, Eveline O. F. M. Snelder, Claudia Wiedner, Luuc R. Mur, and Jef Huisman

The Microcystin Composition of the Cyanobacterium Planktothrix agardhii Changes toward a More Toxic Variant with Increasing Light Intensity
Appl. Environ. Microbiol. 2005 71: 5177-5181. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

E. Gallagher, L. McGuinness, C. Phelps, L. Y. Young, and L. J. Kerkhof

¹³C-Carrier DNA Shortens the Incubation Time Needed To Detect Benzoate-Utilizing Denitrifying Bacteria by Stable-Isotope Probing
Appl. Environ. Microbiol. 2005 71: 5192-5196. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Susan L. Perkins, Rebecca B. Budinoff, and Mark E. Siddall

New Gammaproteobacteria Associated with Blood-Feeding Leeches and a Broad Phylogenetic Analysis of Leech Endosymbionts
Appl. Environ. Microbiol. 2005 71: 5219-5224. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Fred A. Rainey, Keren Ray, Margarida Ferreira, Bridget Z. Gatz, M. Fernanda Nobre, Danielle Bagaley, Brian A. Rash, Mie-Jung Park, Ashlee M. Earl, Nicole C. Shank, Alanna M. Small, Margaret C. Henk, John R. Battista, Peter Kämpfer, and Milton S. da Costa

Extensive Diversity of Ionizing-Radiation-Resistant Bacteria Recovered from Sonoran Desert Soil and Description of Nine New Species of the Genus Deinococcus Obtained from a Single Soil Sample
Appl. Environ. Microbiol. 2005 71: 5225-5235. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

W. R. Harcombe and J. J. Bull

Impact of Phages on Two-Species Bacterial Communities
Appl. Environ. Microbiol. 2005 71: 5254-5259. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Leen De Gelder, Frederik P. J. Vandecasteele, Celeste J. Brown, Larry J. Forney, and Eva M. Top

Plasmid Donor Affects Host Range of Promiscuous IncP-1ß Plasmid pB10 in an Activated-Sludge Microbial Community
Appl. Environ. Microbiol. 2005 71: 5309-5317. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

André M. Comeau, Enrico Buenaventura, and Curtis A. Suttle

A Persistent, Productive, and Seasonally Dynamic Vibriophage Population within Pacific Oysters (Crassostrea gigas)
Appl. Environ. Microbiol. 2005 71: 5324-5331. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Christopher G. Struchtemeyer, Mostafa S. Elshahed, Kathleen E. Duncan, and Michael J. McInerney

Evidence for Aceticlastic Methanogenesis in the Presence of Sulfate in a Gas Condensate-Contaminated Aquifer
Appl. Environ. Microbiol. 2005 71: 5348-5353. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Matthew J. Church, Cindy M. Short, Bethany D. Jenkins, David M. Karl, and Jonathan P. Zehr

Temporal Patterns of Nitrogenase Gene (nifH) Expression in the Oligotrophic North Pacific Ocean
Appl. Environ. Microbiol. 2005 71: 5362-5370. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

R. E. Steinberger and P. A. Holden

Extracellular DNA in Single- and Multiple-Species Unsaturated Biofilms
Appl. Environ. Microbiol. 2005 71: 5404-5410. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Matthew J. Hundt and Carmel G. Ruffolo

Interaction of Pasteurella multocida with Free-Living Amoebae
Appl. Environ. Microbiol. 2005 71: 5458-5464. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Falk Warnecke, Ruben Sommaruga, Raju Sekar, Julia S. Hofer, and Jakob Pernthaler

Abundances, Identity, and Growth State of Actinobacteria in Mountain Lakes of Different UV Transparency
Appl. Environ. Microbiol. 2005 71: 5551-5559. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Agnieszka Klonowska, Thierry Heulin, and André Vermeglio

Selenite and Tellurite Reduction by Shewanella oneidensis
Appl. Environ. Microbiol. 2005 71: 5607-5609. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Public Health Microbiology:

Armand P. H. M. Hermans, Tjakko Abee, Marcel H. Zwietering, and Henk J. M. Aarts

Identification of Novel Salmonella enterica Serovar Typhimurium DT104-Specific Prophage and Nonprophage Chromosomal Sequences among Serovar Typhimurium Isolates by Genomic Subtractive Hybridization
Appl. Environ. Microbiol. 2005 71: 4979-4985. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Patrick F. McDermott, Patti Cullen, Susannah K. Hubert, Shawn D. McDermott, Mary Bartholomew, Shabbir Simjee, and David D. Wagner

Changes in Antimicrobial Susceptibility of Native Enterococcus faecium in Chickens Fed Virginiamycin
Appl. Environ. Microbiol. 2005 71: 4986-4991. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Una M. Ryan, Caroline Bath, Ian Robertson, Carolyn Read, Aileen Elliot, Linda Mcinnes, Rebecca Traub, and Brown Besier

Sheep May Not Be an Important Zoonotic Reservoir for Cryptosporidium and Giardia Parasites
Appl. Environ. Microbiol. 2005 71: 4992-4997. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

R. Virto, P. Mañas, I. Álvarez, S. Condon, and J. Raso

Membrane Damage and Microbial Inactivation by Chlorine in the Absence and Presence of a Chlorine-Demanding Substrate
Appl. Environ. Microbiol. 2005 71: 5022-5028. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Marisa Mazari-Hiriart, Yolanda López-Vidal, Sergio Ponce-de-León, Juan José Calva, Francisco Rojo-Callejas, and Gonzalo Castillo-Rojas

Longitudinal Study of Microbial Diversity and Seasonality in the Mexico City Metropolitan Area Water Supply System
Appl. Environ. Microbiol. 2005 71: 5129-5137. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

G. Douglas Inglis, Lisa D. Kalischuk, Hilma W. Busz, and John P. Kastelic

Colonization of Cattle Intestines by Campylobacter jejuni and Campylobacter lanienae
Appl. Environ. Microbiol. 2005 71: 5145-5153. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Gail Brion, Chandramouli Viswanathan, T. R. Neelakantan, Srinivasa Lingireddy, Rosina Girones, David Lees, Annika Allard, and Apostolos Vantarakis

Artificial Neural Network Prediction of Viruses in Shellfish
Appl. Environ. Microbiol. 2005 71: 5244-5253. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Richard J. Whittington, Ian B. Marsh, and Leslie A. Reddacliff

Survival of Mycobacterium avium subsp. paratuberculosis in Dam Water and Sediment
Appl. Environ. Microbiol. 2005 71: 5304-5308. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Inger Kühn, Aina Iversen, Maria Finn, Christina Greko, Lars G. Burman, Anicet R. Blanch, Xavier Vilanova, Albert Manero, Huw Taylor, Jonathan Caplin, Lucas Domínguez, Inmaculada A. Herrero, Miguel A. Moreno, and Roland Möllby

Occurrence and Relatedness of Vancomycin-Resistant Enterococci in Animals, Humans, and the Environment in Different European Regions
Appl. Environ. Microbiol. 2005 71: 5383-5390. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

S. C. Wilson, C. Wu, L. A. Andriychuk, J. M. Martin, T. L. Brasel, C. A. Jumper, and D. C. Straus

Effect of Chlorine Dioxide Gas on Fungi and Mycotoxins Associated with Sick Building Syndrome
Appl. Environ. Microbiol. 2005 71: 5399-5403. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

W. J. Snelling, J. P. McKenna, D. M. Lecky, and J. S. G. Dooley

Survival of Campylobacter jejuni in Waterborne Protozoa
Appl. Environ. Microbiol. 2005 71: 5560-5571. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sebastian Jäger, Dietrich Mack, Holger Rohde, Matthias A. Horstkotte, and Johannes K.-M. Knobloch

Disintegration of Staphylococcus epidermidis Biofilms under Glucose-Limiting Conditions Depends on the Activity of the Alternative Sigma Factor ^B
Appl. Environ. Microbiol. 2005 71: 5577-5581. [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]  

E. W. Rice, N. J. Adcock, M. Sivaganesan, and L. J. Rose

Inactivation of Spores of Bacillus anthracis Sterne, Bacillus cereus, and Bacillus thuringiensis subsp. israelensis by Chlorination
Appl. Environ. Microbiol. 2005 71: 5587-5589. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Manabu Furushita, Akira Okamoto, Toshimichi Maeda, Michio Ohta, and Tsuneo Shiba

Isolation of Multidrug-Resistant Stenotrophomonas maltophilia from Cultured Yellowtail (Seriola quinqueradiata) from a Marine Fish Farm
Appl. Environ. Microbiol. 2005 71: 5598-5600. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

K. Suresh, H. V. Smith, and T. C. Tan

Viable Blastocystis Cysts in Scottish and Malaysian Sewage Samples
Appl. Environ. Microbiol. 2005 71: 5619-5620. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Nena Nwachuku, Charles P. Gerba, Amy Oswald, and Faezeh D. Mashadi

Comparative Inactivation of Adenovirus Serotypes by UV Light Disinfection
Appl. Environ. Microbiol. 2005 71: 5633-5636. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Andrey Payan, James Ebdon, Huw Taylor, Christophe Gantzer, Jakob Ottoson, Georgos T. Papageorgiou, Anicet R. Blanch, Francisco Lucena, Juan Jofre, and Maite Muniesa

Method for Isolation of Bacteroides Bacteriophage Host Strains Suitable for Tracking Sources of Fecal Pollution in Water
Appl. Environ. Microbiol. 2005 71: 5659-5662. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Food Microbiology:

Sandra C. Stringer, Martin D. Webb, Susan M. George, Carmen Pin, and Michael W. Peck

Heterogeneity of Times Required for Germination and Outgrowth from Single Spores of Nonproteolytic Clostridium botulinum
Appl. Environ. Microbiol. 2005 71: 4998-5003. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Koji Suzuki, Kazumaru Iijima, Kazutaka Ozaki, and Hiroshi Yamashita

Isolation of a Hop-Sensitive Variant of Lactobacillus lindneri and Identification of Genetic Markers for Beer Spoilage Ability of Lactic Acid Bacteria
Appl. Environ. Microbiol. 2005 71: 5089-5097. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jeffrey D. Palumbo, Aya Kaneko, Kimanh D. Nguyen, and Lisa Gorski

Identification of Genes Induced in Listeria monocytogenes during Growth and Attachment to Cut Cabbage, Using Differential Display
Appl. Environ. Microbiol. 2005 71: 5236-5243. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kate S. Howell, Mathias Klein, Jan H. Swiegers, Yoji Hayasaka, Gordon M. Elsey, Graham H. Fleet, Peter B. Høj, Isak S. Pretorius, and Miguel A. de Barros Lopes

Genetic Determinants of Volatile-Thiol Release by Saccharomyces cerevisiae during Wine Fermentation
Appl. Environ. Microbiol. 2005 71: 5420-5426. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Byron F. Brehm-Stecher, Jens J. Hyldig-Nielsen, and Eric A. Johnson

Design and Evaluation of 16S rRNA-Targeted Peptide Nucleic Acid Probes for Whole-Cell Detection of Members of the Genus Listeria
Appl. Environ. Microbiol. 2005 71: 5451-5457. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Anne Gravesen, Charidimos Lekkas, and Susanne Knøchel

Surface Attachment of Listeria monocytogenes Is Induced by Sublethal Concentrations of Alcohol at Low Temperatures
Appl. Environ. Microbiol. 2005 71: 5601-5603. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

X. C. Shan, P. Wolffs, and M. W. Griffiths

Rapid and Quantitative Detection of Hepatitis A Virus from Green Onion and Strawberry Rinses by Use of Real-Time Reverse Transcription-PCR
Appl. Environ. Microbiol. 2005 71: 5624-5626. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Genetics and Molecular Biology:

Xue Peng, Eiji Masai, Daisuke Kasai, Keisuke Miyauchi, Yoshihiro Katayama, and Masao Fukuda

A Second 5-Carboxyvanillate Decarboxylase Gene, ligW2, Is Important for Lignin-Related Biphenyl Catabolism in Sphingomonas paucimobilis SYK-6
Appl. Environ. Microbiol. 2005 71: 5014-5021. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Seiki Takeno, Eiji Sakuradani, Akiko Tomi, Misa Inohara-Ochiai, Hiroshi Kawashima, Toshihiko Ashikari, and Sakayu Shimizu

Improvement of the Fatty Acid Composition of an Oil-Producing Filamentous Fungus, Mortierella alpina 1S-4, through RNA Interference with 12-Desaturase Gene Expression
Appl. Environ. Microbiol. 2005 71: 5124-5128. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Anand Ballal and Shree K. Apte

Differential Expression of the Two kdp Operons in the Nitrogen-Fixing Cyanobacterium Anabaena sp. Strain L-31
Appl. Environ. Microbiol. 2005 71: 5297-5303. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Yuan Yi Liu, Jung Hee Woo, and David M. Neville, Jr.

Overexpression of an Anti-CD3 Immunotoxin Increases Expression and Secretion of Molecular Chaperone BiP/Kar2p by Pichia pastoris
Appl. Environ. Microbiol. 2005 71: 5332-5340. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Livia Leoni, Giordano Rampioni, Valeria Di Stefano, and Elisabetta Zennaro

Dual Role of Response Regulator StyR in Styrene Catabolism Regulation
Appl. Environ. Microbiol. 2005 71: 5411-5419. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Susan Reslewic, Shiguo Zhou, Mike Place, Yaoping Zhang, Adam Briska, Steve Goldstein, Chris Churas, Rod Runnheim, Dan Forrest, Alex Lim, Alla Lapidus, Cliff S. Han, Gary P. Roberts, and David C. Schwartz

Whole-Genome Shotgun Optical Mapping of Rhodospirillum rubrum
Appl. Environ. Microbiol. 2005 71: 5511-5522. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Michelle E. Maxson and Andrew J. Darwin

Improved System for Construction and Analysis of Single-Copy ß-Galactosidase Operon Fusions in Yersinia enterocolitica
Appl. Environ. Microbiol. 2005 71: 5614-5618. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Giseli Klassen, Emanuel M. Souza, M. Geoffrey Yates, Liu Un Rigo, Roberta M. Costa, Juliana Inaba, and Fábio O. Pedrosa

Nitrogenase Switch-Off by Ammonium Ions in Azospirillum brasilense Requires the GlnB Nitrogen Signal-Transducing Protein
Appl. Environ. Microbiol. 2005 71: 5637-5641. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

S. Sitthisak, K. Howieson, C. Amezola, and R. K. Jayaswal

Characterization of a Multicopper Oxidase Gene from Staphylococcus aureus
Appl. Environ. Microbiol. 2005 71: 5650-5653. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Noel Verjan, Ikuo Hirono, and Takashi Aoki

Genetic Loci of Major Antigenic Protein Genes of Edwardsiella tarda
Appl. Environ. Microbiol. 2005 71: 5654-5658. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Plant Microbiology:

Hyojeung Kang and Dennis C. Gross

Characterization of a Resistance-Nodulation-Cell Division Transporter System Associated with the syr-syp Genomic Island of Pseudomonas syringae pv. syringae
Appl. Environ. Microbiol. 2005 71: 5056-5065. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Michael S. H. Hwang, Robyn L. Morgan, Sara F. Sarkar, Pauline W. Wang, and David S. Guttman

Phylogenetic Characterization of Virulence and Resistance Phenotypes of Pseudomonas syringae
Appl. Environ. Microbiol. 2005 71: 5182-5191. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Annabel H. A. Parret, Koen Temmerman, and René De Mot

Novel Lectin-Like Bacteriocins of Biocontrol Strain Pseudomonas fluorescens Pf-5
Appl. Environ. Microbiol. 2005 71: 5197-5207. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

J.-M. Monier and S. E. Lindow

Spatial Organization of Dual-Species Bacterial Aggregates on Leaf Surfaces
Appl. Environ. Microbiol. 2005 71: 5484-5493. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Biodegradation:

Quyen Banh, Matthias Arenskötter, and Alexander Steinbüchel

Establishment of Tn5096-Based Transposon Mutagenesis in Gordonia polyisoprenivorans
Appl. Environ. Microbiol. 2005 71: 5077-5084. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Masae Horinouchi, Toshiaki Hayashi, Hiroyuki Koshino, Tomokazu Kurita, and Toshiaki Kudo

Identification of 9,17-Dioxo-1,2,3,4,10,19-Hexanorandrostan-5-oic Acid, 4-Hydroxy-2-Oxohexanoic Acid, and 2-Hydroxyhexa-2,4-Dienoic Acid and Related Enzymes Involved in Testosterone Degradation in Comamonas testosteroni TA441
Appl. Environ. Microbiol. 2005 71: 5275-5281. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Romy Chakraborty and John D. Coates

Hydroxylation and Carboxylation—Two Crucial Steps of Anaerobic Benzene Degradation by Dechloromonas Strain RCB
Appl. Environ. Microbiol. 2005 71: 5427-5432. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Enzymology and Protein Engineering:

Thijs Kaper, Boguslawa Talik, Thijs J. Ettema, Herman Bos, Marc J. E. C. van der Maarel, and Lubbert Dijkhuizen

Amylomaltase of Pyrobaculum aerophilum IM2 Produces Thermoreversible Starch Gels
Appl. Environ. Microbiol. 2005 71: 5098-5106. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Wei Zhang, Yuan Liu, Huabao Zheng, Sheng Yang, and Weihong Jiang

Improving the Activity and Stability of GL-7-ACA Acylase CA130 by Site-Directed Mutagenesis
Appl. Environ. Microbiol. 2005 71: 5290-5296. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Jaehong Han, Song-Young Kim, Jihyun Jung, Yoongho Lim, Joong-Hoon Ahn, Su-Il Kim, and Hor-Gil Hur

Epoxide Formation on the Aromatic B Ring of Flavanone by Biphenyl Dioxygenase of Pseudomonas pseudoalcaligenes KF707
Appl. Environ. Microbiol. 2005 71: 5354-5361. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Michiyo Yanase, Hiroki Takata, Kazutoshi Fujii, Takeshi Takaha, and Takashi Kuriki

Cumulative Effect of Amino Acid Replacements Results in Enhanced Thermostability of Potato Type L -Glucan Phosphorylase
Appl. Environ. Microbiol. 2005 71: 5433-5439. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kevin McClay, Corinne Boss, Ivan Keresztes, and Robert J. Steffan

Mutations of Toluene-4-Monooxygenase That Alter Regiospecificity of Indole Oxidation and Lead to Production of Novel Indigoid Pigments
Appl. Environ. Microbiol. 2005 71: 5476-5483. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Sandra W. A. Hinz, Marieke I. Pastink, Lambertus A. M. van den Broek, Jean-Paul Vincken, and Alphons G. J. Voragen

Bifidobacterium longum Endogalactanase Liberates Galactotriose from Type I Galactans
Appl. Environ. Microbiol. 2005 71: 5501-5510. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hesham M. Elhariry, Jochen Meens, Matthias Stehr, and Georg Auling

S434F in NrdE Generates the Thermosensitive Phenotype of Corynebacterium ammoniagenes CH31 and Enhances Thermolability by Increasing the Surface Hydrophobicity of the NrdE(Ts) Protein
Appl. Environ. Microbiol. 2005 71: 5582-5586. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Environmental Microbiology:

ChoongSoo Yun, Daiki Amakata, Yasuhiro Matsuo, Hideyuki Matsuda, and Makoto Kawamukai

New Chitosan-Degrading Strains That Produce Chitosanases Similar to ChoA of Mitsuaria chitosanitabida
Appl. Environ. Microbiol. 2005 71: 5138-5144. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Kerry L. Tomlin, Rebecca J. Malott, Gordon Ramage, Douglas G. Storey, Pamela A. Sokol, and H. Ceri

Quorum-Sensing Mutations Affect Attachment and Stability of Burkholderia cenocepacia Biofilms
Appl. Environ. Microbiol. 2005 71: 5208-5218. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Hélène Agogué, Fabien Joux, Ingrid Obernosterer, and Philippe Lebaron

Resistance of Marine Bacterioneuston to Solar Radiation
Appl. Environ. Microbiol. 2005 71: 5282-5289. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Susan M. Barns, Christy C. Grow, Richard T. Okinaka, Paul Keim, and Cheryl R. Kuske

Detection of Diverse New Francisella-Like Bacteria in Environmental Samples
Appl. Environ. Microbiol. 2005 71: 5494-5500. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Brice M. R. Appenzeller, Carolina Yañez, Frederic Jorand, and Jean-Claude Block

Advantage Provided by Iron for Escherichia coli Growth and Cultivability in Drinking Water
Appl. Environ. Microbiol. 2005 71: 5621-5623. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mycology:

Diane J. Holder and Nemat O. Keyhani

Adhesion of the Entomopathogenic Fungus Beauveria (Cordyceps) bassiana to Substrata
Appl. Environ. Microbiol. 2005 71: 5260-5266. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Martin Trépanier, Guillaume Bécard, Peter Moutoglis, Claude Willemot, Serge Gagné, Tyler J. Avis, and Jacques-André Rioux

Dependence of Arbuscular-Mycorrhizal Fungi on Their Plant Host for Palmitic Acid Synthesis
Appl. Environ. Microbiol. 2005 71: 5341-5347. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Matthias Brock

Generation and Phenotypic Characterization of Aspergillus nidulans Methylisocitrate Lyase Deletion Mutants: Methylisocitrate Inhibits Growth and Conidiation
Appl. Environ. Microbiol. 2005 71: 5465-5475. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Geomicrobiology:

Aaron J. Coby and Flynn W. Picardal

Inhibition of NO₃^– and NO₂^– Reduction by Microbial Fe(III) Reduction: Evidence of a Reaction between NO₂^– and Cell Surface-Bound Fe²⁺
Appl. Environ. Microbiol. 2005 71: 5267-5274. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Mohamed L. Merroun, Johannes Raff, André Rossberg, Christoph Hennig, Tobias Reich, and Sonja Selenska-Pobell

Complexation of Uranium by Cells and S-Layer Sheets of Bacillus sphaericus JG-A12
Appl. Environ. Microbiol. 2005 71: 5532-5543. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Evolutionary and Genomic Microbiology:

David J. Bergmann, Alan B. Hooper, and Martin G. Klotz

Structure and Sequence Conservation of hao Cluster Genes of Autotrophic Ammonia-Oxidizing Bacteria: Evidence for Their Evolutionary History
Appl. Environ. Microbiol. 2005 71: 5371-5382. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Invertebrate Microbiology:

Yohey Suzuki, Takenori Sasaki, Masae Suzuki, Yuichi Nogi, Tetsuya Miwa, Ken Takai, Kenneth H. Nealson, and Koki Horikoshi

Novel Chemoautotrophic Endosymbiosis between a Member of the Epsilonproteobacteria and the Hydrothermal-Vent Gastropod Alviniconcha aff. hessleri (Gastropoda: Provannidae) from the Indian Ocean
Appl. Environ. Microbiol. 2005 71: 5440-5450. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Carmen Sara Hernández and Juan Ferré

Common Receptor for Bacillus thuringiensis Toxins Cry1Ac, Cry1Fa, and Cry1Ja in Helicoverpa armigera, Helicoverpa zea, and Spodoptera exigua
Appl. Environ. Microbiol. 2005 71: 5627-5629. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Imran Ali Siddiqui, Dieter Haas, and Stephan Heeb

Extracellular Protease of Pseudomonas fluorescens CHA0, a Biocontrol Factor with Activity against the Root-Knot Nematode Meloidogyne incognita
Appl. Environ. Microbiol. 2005 71: 5646-5649. [Abstract] [Full Text] [PDF] [Reprints and Permissions]  

Author's Correction:

Yetrib Hathout, Barbara Setlow, Rosa-Martha Cabrera-Martinez, Catherine Fenselau, and Peter Setlow

Small, Acid-Soluble Proteins as Biomarkers in Mass Spectrometry Analysis of Bacillus Spores
Appl. Environ. Microbiol. 2005 71: 5663. [Full Text] [PDF] [Reprints and Permissions]  

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