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Physiology and Biotechnology:

Raffaella Di Cagno, Maria De Angelis, Antonio Limitone, Patrick F. Fox, and Marco Gobbetti

Response of Lactobacillus helveticus PR4 to Heat Stress during Propagation in Cheese Whey with a Gradient of Decreasing Temperatures
Appl. Environ. Microbiol. 2006 72: 4503-4514. [Abstract] [Full Text] [PDF]  

B. Purevdorj-Gage, K. B. Sheehan, and L. E. Hyman

Effects of Low-Shear Modeled Microgravity on Cell Function, Gene Expression, and Phenotype in Saccharomyces cerevisiae
Appl. Environ. Microbiol. 2006 72: 4569-4575. [Abstract] [Full Text] [PDF]  

Brigitte Cambon, Virginie Monteil, Fabienne Remize, Carole Camarasa, and Sylvie Dequin

Effects of GPD1 Overexpression in Saccharomyces cerevisiae Commercial Wine Yeast Strains Lacking ALD6 Genes
Appl. Environ. Microbiol. 2006 72: 4688-4694. [Abstract] [Full Text] [PDF]  

Satoshi Yamada, Naoki Awano, Kyoko Inubushi, Eri Maeda, Shigeru Nakamori, Kunihiko Nishino, Akihito Yamaguchi, and Hiroshi Takagi

Effect of Drug Transporter Genes on Cysteine Export and Overproduction in Escherichia coli
Appl. Environ. Microbiol. 2006 72: 4735-4742. [Abstract] [Full Text] [PDF]  

Roelco J. Kleijn, Wouter A. van Winden, Cor Ras, Walter M. van Gulik, Dick Schipper, and Joseph J. Heijnen

¹³C-Labeled Gluconate Tracing as a Direct and Accurate Method for Determining the Pentose Phosphate Pathway Split Ratio in Penicillium chrysogenum
Appl. Environ. Microbiol. 2006 72: 4743-4754. [Abstract] [Full Text] [PDF]  

Fabien Dumetz, Eric Duchaud, Scott E. LaPatra, Claire Le Marrec, Stéphane Claverol, Maria-C. Urdaci, and Michel Le Hénaff

A Protective Immune Response Is Generated in Rainbow Trout by an OmpH-Like Surface Antigen (P18) of Flavobacterium psychrophilum
Appl. Environ. Microbiol. 2006 72: 4845-4852. [Abstract] [Full Text] [PDF]  

M. Carmen Martínez-Cuesta, Carmen Peláez, John Eagles, Michael J. Gasson, Teresa Requena, and Sean B. Hanniffy

YtjE from Lactococcus lactis IL1403 Is a C-S Lyase with ,-Elimination Activity toward Methionine
Appl. Environ. Microbiol. 2006 72: 4878-4884. [Abstract] [Full Text] [PDF]  

Arvind A. Bhagwat, Jasmine Tan, Manan Sharma, Mahendra Kothary, Sharon Low, Ben D. Tall, and Medha Bhagwat

Functional Heterogeneity of RpoS in Stress Tolerance of Enterohemorrhagic Escherichia coli Strains
Appl. Environ. Microbiol. 2006 72: 4978-4986. [Abstract] [Full Text] [PDF]  

Yuda Anriany, Surashri N. Sahu, Kimberly R. Wessels, Lindsay M. McCann, and Sam W. Joseph

Alteration of the Rugose Phenotype in waaG and ddhC Mutants of Salmonella enterica Serovar Typhimurium DT104 Is Associated with Inverse Production of Curli and Cellulose
Appl. Environ. Microbiol. 2006 72: 5002-5012. [Abstract] [Full Text] [PDF]  

Shun'ichi Ishii, Tomoyuki Kosaka, Yasuaki Hotta, and Kazuya Watanabe

Simulating the Contribution of Coaggregation to Interspecies Hydrogen Fluxes in Syntrophic Methanogenic Consortia
Appl. Environ. Microbiol. 2006 72: 5093-5096. [Abstract] [Full Text] [PDF] [Supplemental material]  

B. M. Corcoran, R. P. Ross, G. F. Fitzgerald, P. Dockery, and C. Stanton

Enhanced Survival of GroESL-Overproducing Lactobacillus paracasei NFBC 338 under Stressful Conditions Induced by Drying
Appl. Environ. Microbiol. 2006 72: 5104-5107. [Abstract] [Full Text] [PDF]  

David M. Donovan, Juli Foster-Frey, Shengli Dong, Geneviève M. Rousseau, Sylvain Moineau, and David G. Pritchard

The Cell Lysis Activity of the Streptococcus agalactiae Bacteriophage B30 Endolysin Relies on the Cysteine, Histidine-Dependent Amidohydrolase/Peptidase Domain
Appl. Environ. Microbiol. 2006 72: 5108-5112. [Abstract] [Full Text] [PDF]  

Enzymology and Protein Engineering:

Tina Mlakar and Matic Legisa

Citrate Inhibition-Resistant Form of 6-Phosphofructo-1-Kinase from Aspergillus niger
Appl. Environ. Microbiol. 2006 72: 4515-4521. [Abstract] [Full Text] [PDF]  

Melloney J. Dröge, Ykelien L. Boersma, Peter G. Braun, Robbert Jan Buining, Mattijs K. Julsing, Karin G. A. Selles, Jan Maarten van Dijl, and Wim J. Quax

Phage Display of an Intracellular Carboxylesterase of Bacillus subtilis: Comparison of Sec and Tat Pathway Export Capabilities
Appl. Environ. Microbiol. 2006 72: 4589-4595. [Abstract] [Full Text] [PDF]  

Yves Jouanneau and Christine Meyer

Purification and Characterization of an Arene cis-Dihydrodiol Dehydrogenase Endowed with Broad Substrate Specificity toward Polycyclic Aromatic Hydrocarbon Dihydrodiols
Appl. Environ. Microbiol. 2006 72: 4726-4734. [Abstract] [Full Text] [PDF]  

Tina A. Müller, Thomas Fleischmann, Jan Roelof van der Meer, and Hans-Peter E. Kohler

Purification and Characterization of Two Enantioselective -Ketoglutarate-Dependent Dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH
Appl. Environ. Microbiol. 2006 72: 4853-4861. [Abstract] [Full Text] [PDF]  

Environmental Microbiology:

Daniel H. Buckley, Varisa Huangyutitham, Tyrrell A. Nelson, Angelika Rumberger, and Janice E. Thies

Diversity of Planctomycetes in Soil in Relation to Soil History and Environmental Heterogeneity
Appl. Environ. Microbiol. 2006 72: 4522-4531. [Abstract] [Full Text] [PDF]  

Sarah P. Walters and Katharine G. Field

Persistence and Growth of Fecal Bacteroidales Assessed by Bromodeoxyuridine Immunocapture
Appl. Environ. Microbiol. 2006 72: 4532-4539. [Abstract] [Full Text] [PDF]  

Ruth-Anne Sandaa and Aud Larsen

Seasonal Variations in Virus-Host Populations in Norwegian Coastal Waters: Focusing on the Cyanophage Community Infecting Marine Synechococcus spp.
Appl. Environ. Microbiol. 2006 72: 4610-4618. [Abstract] [Full Text] [PDF]  

H.-L. Alakomi, A. Paananen, M.-L. Suihko, I. M. Helander, and M. Saarela

Weakening Effect of Cell Permeabilizers on Gram-Negative Bacteria Causing Biodeterioration
Appl. Environ. Microbiol. 2006 72: 4695-4703. [Abstract] [Full Text] [PDF]  

Emiliano E. Díaz, Alfons J. M. Stams, Ricardo Amils, and José L. Sanz

Phenotypic Properties and Microbial Diversity of Methanogenic Granules from a Full-Scale Upflow Anaerobic Sludge Bed Reactor Treating Brewery Wastewater
Appl. Environ. Microbiol. 2006 72: 4942-4949. [Abstract] [Full Text] [PDF] [Supplemental material]  

Camilla L. Nesbø, Marlena Dlutek, Olga Zhaxybayeva, and W. Ford Doolittle

Evidence for Existence of "Mesotogas," Members of the Order Thermotogales Adapted to Low-Temperature Environments
Appl. Environ. Microbiol. 2006 72: 5061-5068. [Abstract] [Full Text] [PDF] [Supplemental material]  

Public Health Microbiology:

Anna Slodkowicz-Kowalska, Thaddeus K. Graczyk, Leena Tamang, Szymon Jedrzejewski, Andrzej Nowosad, Piotr Zduniak, Piotr Solarczyk, Autumn S. Girouard, and Anna C. Majewska

Microsporidian Species Known To Infect Humans Are Present in Aquatic Birds: Implications for Transmission via Water?
Appl. Environ. Microbiol. 2006 72: 4540-4544. [Abstract] [Full Text] [PDF]  

W. B. van Zyl, N. A. Page, W. O. K. Grabow, A. D. Steele, and M. B. Taylor

Molecular Epidemiology of Group A Rotaviruses in Water Sources and Selected Raw Vegetables in Southern Africa
Appl. Environ. Microbiol. 2006 72: 4554-4560. [Abstract] [Full Text] [PDF]  

Artashes R. Khachatryan, Thomas E. Besser, Dale D. Hancock, and Douglas R. Call

Use of a Nonmedicated Dietary Supplement Correlates with Increased Prevalence of Streptomycin-Sulfa-Tetracycline-Resistant Escherichia coli on a Dairy Farm
Appl. Environ. Microbiol. 2006 72: 4583-4588. [Abstract] [Full Text] [PDF]  

James G. Fox, Nancy S. Taylor, Shelly Howe, Michele Tidd, Shilu Xu, Bruce J. Paster, and Floyd E. Dewhirst

Helicobacter anseris sp. nov. and Helicobacter brantae sp. nov., Isolated from Feces of Resident Canada Geese in the Greater Boston Area
Appl. Environ. Microbiol. 2006 72: 4633-4637. [Abstract] [Full Text] [PDF]  

Zhongming Ge, Yang Feng, Nancy S. Taylor, Masahiro Ohtani, Martin F. Polz, David B. Schauer, and James G. Fox

Colonization Dynamics of Altered Schaedler Flora Is Influenced by Gender, Aging, and Helicobacter hepaticus Infection in the Intestines of Swiss Webster Mice
Appl. Environ. Microbiol. 2006 72: 5100-5103. [Abstract] [Full Text] [PDF]  

Microbial Ecology:

Satoshi Ishii, Tao Yan, Dawn A. Shively, Muruleedhara N. Byappanahalli, Richard L. Whitman, and Michael J. Sadowsky

Cladophora (Chlorophyta) spp. Harbor Human Bacterial Pathogens in Nearshore Water of Lake Michigan
Appl. Environ. Microbiol. 2006 72: 4545-4553. [Abstract] [Full Text] [PDF]  

Ketil B. Sørensen and Andreas Teske

Stratified Communities of Active Archaea in Deep Marine Subsurface Sediments
Appl. Environ. Microbiol. 2006 72: 4596-4603. [Abstract] [Full Text] [PDF]  

Michael Schauer, Jing Jiang, and Martin W. Hahn

Recurrent Seasonal Variations in Abundance and Composition of Filamentous SOL Cluster Bacteria (Saprospiraceae, Bacteroidetes) in Oligomesotrophic Lake Mondsee (Austria)
Appl. Environ. Microbiol. 2006 72: 4704-4712. [Abstract] [Full Text] [PDF] [Supplemental material]  

Anja Kamp, Peter Stief, and Heide N. Schulz-Vogt

Anaerobic Sulfide Oxidation with Nitrate by a Freshwater Beggiatoa Enrichment Culture
Appl. Environ. Microbiol. 2006 72: 4755-4760. [Abstract] [Full Text] [PDF]  

Manuela Filippini, Nanna Buesing, Yvan Bettarel, Télesphore Sime-Ngando, and Mark O. Gessner

Infection Paradox: High Abundance but Low Impact of Freshwater Benthic Viruses
Appl. Environ. Microbiol. 2006 72: 4893-4898. [Abstract] [Full Text] [PDF]  

Steven W. Wilhelm, Matthew J. Carberry, Melanie L. Eldridge, Leo Poorvin, Matthew A. Saxton, and Martina A. Doblin

Marine and Freshwater Cyanophages in a Laurentian Great Lake: Evidence from Infectivity Assays and Molecular Analyses of g20 Genes
Appl. Environ. Microbiol. 2006 72: 4957-4963. [Abstract] [Full Text] [PDF]  

Sébastien Vilain, Yun Luo, Michael B. Hildreth, and Volker S. Brözel

Analysis of the Life Cycle of the Soil Saprophyte Bacillus cereus in Liquid Soil Extract and in Soil
Appl. Environ. Microbiol. 2006 72: 4970-4977. [Abstract] [Full Text] [PDF]  

Heather A. O'Connell, Greg S. Kottkamp, James L. Eppelbaum, Bryan A. Stubblefield, Sarah E. Gilbert, and Eric S. Gilbert

Influences of Biofilm Structure and Antibiotic Resistance Mechanisms on Indirect Pathogenicity in a Model Polymicrobial Biofilm
Appl. Environ. Microbiol. 2006 72: 5013-5019. [Abstract] [Full Text] [PDF]  

Thomas A. Auchtung, Cristina D. Takacs-Vesbach, and Colleen M. Cavanaugh

16S rRNA Phylogenetic Investigation of the Candidate Division "Korarchaeota"
Appl. Environ. Microbiol. 2006 72: 5077-5082. [Abstract] [Full Text] [PDF]  

Johanna M. Rinta-Kanto and Steven W. Wilhelm

Diversity of Microcystin-Producing Cyanobacteria in Spatially Isolated Regions of Lake Erie
Appl. Environ. Microbiol. 2006 72: 5083-5085. [Abstract] [Full Text] [PDF]  

Yi-Huang Hsueh, Eileen B. Somers, Didier Lereclus, and Amy C. Lee Wong

Biofilm Formation by Bacillus cereus Is Influenced by PlcR, a Pleiotropic Regulator
Appl. Environ. Microbiol. 2006 72: 5089-5092. [Abstract] [Full Text] [PDF]  

Phyllis M. O'Donnell, Hernan Aviles, Mark Lyte, and Gerald Sonnenfeld

Enhancement of In Vitro Growth of Pathogenic Bacteria by Norepinephrine: Importance of Inoculum Density and Role of Transferrin
Appl. Environ. Microbiol. 2006 72: 5097-5099. [Abstract] [Full Text] [PDF]  

Dimitar Karakashev, Damien J. Batstone, Eric Trably, and Irini Angelidaki

Acetate Oxidation Is the Dominant Methanogenic Pathway from Acetate in the Absence of Methanosaetaceae
Appl. Environ. Microbiol. 2006 72: 5138-5141. [Abstract] [Full Text] [PDF] [Supplemental material]  

Food Microbiology:

Jihong Li and Bruce A. McClane

Further Comparison of Temperature Effects on Growth and Survival of Clostridium perfringens Type A Isolates Carrying a Chromosomal or Plasmid-Borne Enterotoxin Gene
Appl. Environ. Microbiol. 2006 72: 4561-4568. [Abstract] [Full Text] [PDF]  

Sachiko Hayashi, Masatoshi Okura, and Ro Osawa

Soft-Agar-Coated Filter Method for Early Detection of Viable and Thermostable Direct Hemolysin (TDH)- or TDH-Related Hemolysin-Producing Vibrio parahaemolyticus in Seafood
Appl. Environ. Microbiol. 2006 72: 4576-4582. [Abstract] [Full Text] [PDF]  

Danilo Ercolini, Federica Russo, Elena Torrieri, Paolo Masi, and Francesco Villani

Changes in the Spoilage-Related Microbiota of Beef during Refrigerated Storage under Different Packaging Conditions
Appl. Environ. Microbiol. 2006 72: 4663-4671. [Abstract] [Full Text] [PDF]  

R. Lindqvist

Estimation of Staphylococcus aureus Growth Parameters from Turbidity Data: Characterization of Strain Variation and Comparison of Methods
Appl. Environ. Microbiol. 2006 72: 4862-4870. [Abstract] [Full Text] [PDF]  

Sigrid C. J. De Keersmaecker, Kristien Braeken, Tine L. A. Verhoeven, Mónica Perea Vélez, Sarah Lebeer, Jos Vanderleyden, and Pascal Hols

Flow Cytometric Testing of Green Fluorescent Protein-Tagged Lactobacillus rhamnosus GG for Response to Defensins
Appl. Environ. Microbiol. 2006 72: 4923-4930. [Abstract] [Full Text] [PDF]  

Yuelian Shen, Yan Liu, Yifan Zhang, Jennifer Cripe, William Conway, Jianghong Meng, Grace Hall, and Arvind A. Bhagwat

Isolation and Characterization of Listeria monocytogenes Isolates from Ready-To-Eat Foods in Florida
Appl. Environ. Microbiol. 2006 72: 5073-5076. [Abstract] [Full Text] [PDF] [Supplemental material]  

Marina Elli, Maria Luisa Callegari, Susanna Ferrari, Elena Bessi, Daniela Cattivelli, Sara Soldi, Lorenzo Morelli, Nathalie Goupil Feuillerat, and Jean-Michel Antoine

Survival of Yogurt Bacteria in the Human Gut
Appl. Environ. Microbiol. 2006 72: 5113-5117. [Abstract] [Full Text] [PDF]  

Line Thorsen, Bjarne Munk Hansen, Kristian Fog Nielsen, Niels Bohse Hendriksen, Richard Kerry Phipps, and Birgitte Bjørn Budde

Characterization of Emetic Bacillus weihenstephanensis, a New Cereulide-Producing Bacterium
Appl. Environ. Microbiol. 2006 72: 5118-5121. [Abstract] [Full Text] [PDF] [Supplemental material]  

Sampo J. Lahtinen, Arthur C. Ouwehand, Johanna P. Reinikainen, Jaakko M. Korpela, Jouko Sandholm, and Seppo J. Salminen

Intrinsic Properties of So-Called Dormant Probiotic Bacteria, Determined by Flow Cytometric Viability Assays
Appl. Environ. Microbiol. 2006 72: 5132-5134. [Abstract] [Full Text] [PDF]  

Biodegradation:

Fei Tao, Bo Yu, Ping Xu, and Cui Qing Ma

Biodesulfurization in Biphasic Systems Containing Organic Solvents
Appl. Environ. Microbiol. 2006 72: 4604-4609. [Abstract] [Full Text] [PDF] [Supplemental material]  

Mycology:

Verena Siewers, Leonie Kokkelink, Jørn Smedsgaard, and Paul Tudzynski

Identification of an Abscisic Acid Gene Cluster in the Grey Mold Botrytis cinerea
Appl. Environ. Microbiol. 2006 72: 4619-4626. [Abstract] [Full Text] [PDF]  

Amber Vanden Wymelenberg, Grzegorz Sabat, Michael Mozuch, Philip J. Kersten, Dan Cullen, and Robert A. Blanchette

Structure, Organization, and Transcriptional Regulation of a Family of Copper Radical Oxidase Genes in the Lignin-Degrading Basidiomycete Phanerochaete chrysosporium
Appl. Environ. Microbiol. 2006 72: 4871-4877. [Abstract] [Full Text] [PDF]  

Eleanor W. Trotter, Emma J. Collinson, Ian W. Dawes, and Chris M. Grant

Old Yellow Enzymes Protect against Acrolein Toxicity in the Yeast Saccharomyces cerevisiae
Appl. Environ. Microbiol. 2006 72: 4885-4892. [Abstract] [Full Text] [PDF]  

Vera Kuzina and Enrique Cerdá-Olmedo

Modification of Sexual Development and Carotene Production by Acetate and Other Small Carboxylic Acids in Blakeslea trispora and Phycomyces blakesleeanus
Appl. Environ. Microbiol. 2006 72: 4917-4922. [Abstract] [Full Text] [PDF]  

Gerd J. Mander, Huaming Wang, Elizabeth Bodie, Jens Wagner, Kay Vienken, Claudia Vinuesa, Caroline Foster, Abigail C. Leeder, Gethin Allen, Valerie Hamill, Giselle G. Janssen, Nigel Dunn-Coleman, Marvin Karos, Hans Georg Lemaire, Thomas Subkowski, Claus Bollschweiler, Geoffrey Turner, Bernhard Nüsslein, and Reinhard Fischer

Use of Laccase as a Novel, Versatile Reporter System in Filamentous Fungi
Appl. Environ. Microbiol. 2006 72: 5020-5026. [Abstract] [Full Text] [PDF]  

Laura Mateos, Alberto Jiménez, José L. Revuelta, and María A. Santos

Purine Biosynthesis, Riboflavin Production, and Trophic-Phase Span Are Controlled by a Myb-Related Transcription Factor in the Fungus Ashbya gossypii
Appl. Environ. Microbiol. 2006 72: 5052-5060. [Abstract] [Full Text] [PDF] [Supplemental material]  

Marek Mentel, Mário Spírek, Dorte Jørck-Ramberg, and Jure Piskur

Transfer of Genetic Material between Pathogenic and Food-Borne Yeasts
Appl. Environ. Microbiol. 2006 72: 5122-5125. [Abstract] [Full Text] [PDF]  

Invertebrate Microbiology:

Dania Richter and Franz-Rainer Matuschka

Perpetuation of the Lyme Disease Spirochete Borrelia lusitaniae by Lizards
Appl. Environ. Microbiol. 2006 72: 4627-4632. [Abstract] [Full Text] [PDF]  

Peter D. Christian, Andrew R. Richards, and Trevor Williams

Differential Adsorption of Occluded and Nonoccluded Insect-Pathogenic Viruses to Soil-Forming Minerals
Appl. Environ. Microbiol. 2006 72: 4648-4652. [Abstract] [Full Text] [PDF]  

Paul L. Worthen, Cindy J. Gode, and Joerg Graf

Culture-Independent Characterization of the Digestive-Tract Microbiota of the Medicinal Leech Reveals a Tripartite Symbiosis
Appl. Environ. Microbiol. 2006 72: 4775-4781. [Abstract] [Full Text] [PDF]  

Iñigo Ruiz de Escudero, Anna Estela, Manuel Porcar, Clara Martínez, José A. Oguiza, Baltasar Escriche, Juan Ferré, and Primitivo Caballero

Molecular and Insecticidal Characterization of a Cry1I Protein Toxic to Insects of the Families Noctuidae, Tortricidae, Plutellidae, and Chrysomelidae
Appl. Environ. Microbiol. 2006 72: 4796-4804. [Abstract] [Full Text] [PDF]  

Shunsuke Goto, Hisashi Anbutsu, and Takema Fukatsu

Asymmetrical Interactions between Wolbachia and Spiroplasma Endosymbionts Coexisting in the Same Insect Host
Appl. Environ. Microbiol. 2006 72: 4805-4810. [Abstract] [Full Text] [PDF]  

Heinz C. Schröder, Hans J. Breter, Ernesto Fattorusso, Hiroshi Ushijima, Matthias Wiens, Renate Steffen, Renato Batel, and Werner E. G. Müller

Okadaic Acid, an Apoptogenic Toxin for Symbiotic/Parasitic Annelids in the Demosponge Suberites domuncula
Appl. Environ. Microbiol. 2006 72: 4907-4916. [Abstract] [Full Text] [PDF]  

Julius T. Csotonyi, Erko Stackebrandt, and Vladimir Yurkov

Anaerobic Respiration on Tellurate and Other Metalloids in Bacteria from Hydrothermal Vent Fields in the Eastern Pacific Ocean
Appl. Environ. Microbiol. 2006 72: 4950-4956. [Abstract] [Full Text] [PDF]  

Elizabeth A. Burton, Ann Marie Pendergast, and Alejandro Aballay

The Caenorhabditis elegans ABL-1 Tyrosine Kinase Is Required for Shigella flexneri Pathogenesis
Appl. Environ. Microbiol. 2006 72: 5043-5051. [Abstract] [Full Text] [PDF]  

Elmus Beale, Guigen Li, Man-Wah Tan, and Kendra P. Rumbaugh

Caenorhabditis elegans Senses Bacterial Autoinducers
Appl. Environ. Microbiol. 2006 72: 5135-5137. [Abstract] [Full Text] [PDF]  

Genetics and Molecular Biology:

Chris Coward, Andrew J. Grant, Craig Swift, Jennifer Philp, Rebecca Towler, Mohammad Heydarian, Jennifer A. Frost, and Duncan J. Maskell

Phase-Variable Surface Structures Are Required for Infection of Campylobacter jejuni by Bacteriophages
Appl. Environ. Microbiol. 2006 72: 4638-4647. [Abstract] [Full Text] [PDF]  

M. De Kwaadsteniet, T. Fraser, C. A. Van Reenen, and L. M. T. Dicks

Bacteriocin T8, a Novel Class IIa sec-Dependent Bacteriocin Produced by Enterococcus faecium T8, Isolated from Vaginal Secretions of Children Infected with Human Immunodeficiency Virus
Appl. Environ. Microbiol. 2006 72: 4761-4766. [Abstract] [Full Text] [PDF]  

Toni A. Chapman, Xi-Yang Wu, Idris Barchia, Karl A. Bettelheim, Steven Driesen, Darren Trott, Mark Wilson, and James J.-C. Chin

Comparison of Virulence Gene Profiles of Escherichia coli Strains Isolated from Healthy and Diarrheic Swine
Appl. Environ. Microbiol. 2006 72: 4782-4795. [Abstract] [Full Text] [PDF] [Supplemental material]  

Karin Förster-Fromme, Birgit Höschle, Christina Mack, Michael Bott, Wolfgang Armbruster, and Dieter Jendrossek

Identification of Genes and Proteins Necessary for Catabolism of Acyclic Terpenes and Leucine/Isovalerate in Pseudomonas aeruginosa
Appl. Environ. Microbiol. 2006 72: 4819-4828. [Abstract] [Full Text] [PDF]  

Feng Chen, Kui Wang, Jeneen Stewart, and Robert Belas

Induction of Multiple Prophages from a Marine Bacterium: a Genomic Approach
Appl. Environ. Microbiol. 2006 72: 4995-5001. [Abstract] [Full Text] [PDF]  

Nancy A. Cornick, Amy F. Helgerson, Volker Mai, Jennifer M. Ritchie, and David W. K. Acheson

In Vivo Transduction of an Stx-Encoding Phage in Ruminants
Appl. Environ. Microbiol. 2006 72: 5086-5088. [Abstract] [Full Text] [PDF]  

Paula Sachelaru, Emile Schiltz, and Roderich Brandsch

A Functional mobA Gene for Molybdopterin Cytosine Dinucleotide Cofactor Biosynthesis Is Required for Activity and Holoenzyme Assembly of the Heterotrimeric Nicotine Dehydrogenases of Arthrobacter nicotinovorans
Appl. Environ. Microbiol. 2006 72: 5126-5131. [Abstract] [Full Text] [PDF]  

Evolutionary and Genomic Microbiology:

Dong Xu and Jean-Charles Côté

Sequence Diversity of the Bacillus thuringiensis and B. cereus Sensu Lato Flagellin (H Antigen) Protein: Comparison with H Serotype Diversity
Appl. Environ. Microbiol. 2006 72: 4653-4662. [Abstract] [Full Text] [PDF] [Supplemental material]  

Methods:

Darrell P. Chandler, Ann E. Jarrell, Eric R. Roden, Julia Golova, Boris Chernov, Matthew J. Schipma, Aaron D. Peacock, and Philip E. Long

Suspension Array Analysis of 16S rRNA from Fe- and SO₄²-Reducing Bacteria in Uranium-Contaminated Sediments Undergoing Bioremediation
Appl. Environ. Microbiol. 2006 72: 4672-4687. [Abstract] [Full Text] [PDF]  

S. Alison Finger, Billie Velapatiño, Margaret Kosek, Livia Santivañez, Daiva Dailidiene, Willi Quino, Jacqueline Balqui, Phabiola Herrera, Douglas E. Berg, and Robert H. Gilman

Effectiveness of Enterobacterial Repetitive Intergenic Consensus PCR and Random Amplified Polymorphic DNA Fingerprinting for Helicobacter pylori Strain Differentiation
Appl. Environ. Microbiol. 2006 72: 4713-4716. [Abstract] [Full Text] [PDF]  

Martin Köstner, Britta Schmidt, Ralph Bertram, and Wolfgang Hillen

Generating Tetracycline-Inducible Auxotrophy in Escherichia coli and Salmonella enterica Serovar Typhimurium by Using an Insertion Element and a Hyperactive Transposase
Appl. Environ. Microbiol. 2006 72: 4717-4725. [Abstract] [Full Text] [PDF]  

Rebekah R. Helton, Ling Liu, and K. Eric Wommack

Assessment of Factors Influencing Direct Enumeration of Viruses within Estuarine Sediments
Appl. Environ. Microbiol. 2006 72: 4767-4774. [Abstract] [Full Text] [PDF]  

J. R. Hermann, S. J. Hoff, K. J. Yoon, A. C. Burkhardt, R. B. Evans, and J. J. Zimmerman

Optimization of a Sampling System for Recovery and Detection of Airborne Porcine Reproductive and Respiratory Syndrome Virus and Swine Influenza Virus
Appl. Environ. Microbiol. 2006 72: 4811-4818. [Abstract] [Full Text] [PDF]  

Jörg Peplies, Christine Lachmund, Frank Oliver Glöckner, and Werner Manz

A DNA Microarray Platform Based on Direct Detection of rRNA for Characterization of Freshwater Sediment-Related Prokaryotic Communities
Appl. Environ. Microbiol. 2006 72: 4829-4838. [Abstract] [Full Text] [PDF]  

Alain Raynal, Fatma Karray, Karine Tuphile, Emmanuelle Darbon-Rongère, and Jean-Luc Pernodet

Excisable Cassettes: New Tools for Functional Analysis of Streptomyces Genomes
Appl. Environ. Microbiol. 2006 72: 4839-4844. [Abstract] [Full Text] [PDF]  

Laura E. Williams, Chris Detter, Kerrie Barry, Alla Lapidus, and Anne O. Summers

Facile Recovery of Individual High-Molecular-Weight, Low-Copy-Number Natural Plasmids for Genomic Sequencing
Appl. Environ. Microbiol. 2006 72: 4899-4906. [Abstract] [Full Text] [PDF] [Supplemental material]  

Liyou Wu, Xueduan Liu, Christopher W. Schadt, and Jizhong Zhou

Microarray-Based Analysis of Subnanogram Quantities of Microbial Community DNAs by Using Whole-Community Genome Amplification
Appl. Environ. Microbiol. 2006 72: 4931-4941. [Abstract] [Full Text] [PDF] [Supplemental material]  

Mingming Wu, John W. Roberts, Sue Kim, Donald L. Koch, and Matthew P. DeLisa

Collective Bacterial Dynamics Revealed Using a Three-Dimensional Population-Scale Defocused Particle Tracking Technique
Appl. Environ. Microbiol. 2006 72: 4987-4994. [Abstract] [Full Text] [PDF]  

Robert M. Q. Shanks, Nicky C. Caiazza, Shannon M. Hinsa, Christine M. Toutain, and George A. O'Toole

Saccharomyces cerevisiae-Based Molecular Tool Kit for Manipulation of Genes from Gram-Negative Bacteria
Appl. Environ. Microbiol. 2006 72: 5027-5036. [Abstract] [Full Text] [PDF] [Supplemental material]  

Yumi Shimomura, Ryuzo Ohno, Fusako Kawai, and Kazuhide Kimbara

Method for Assessment of Viability and Morphological Changes of Bacteria in the Early Stage of Colony Formation on a Simulated Natural Environment
Appl. Environ. Microbiol. 2006 72: 5037-5042. [Abstract] [Full Text] [PDF]  

T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, and G. L. Andersen

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
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Plant Microbiology:

Noriyuki Nukui, Kiwamu Minamisawa, Shin-Ichi Ayabe, and Toshio Aoki

Expression of the 1-Aminocyclopropane-1-Carboxylic Acid Deaminase Gene Requires Symbiotic Nitrogen-Fixing Regulator Gene nifA2 in Mesorhizobium loti MAFF303099
Appl. Environ. Microbiol. 2006 72: 4964-4969. [Abstract] [Full Text] [PDF]  

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