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Contents: November 2007, Volume 73, Issue 22        Food Microbiology        Enzymology and Protein Engineering        Microbial Ecology        Public Health Microbiology        Mycology        Physiology and Biotechnology        Evolutionary and Genomic Microbiology        Plant Microbiology        Genetics and Molecular Biology        Methods        Biodegradation        Environmental Microbiology

Table of Contents

[Index by Author]

To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

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Food Microbiology:

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Real-Time Quantitative PCR Measurement of Ileal Lactobacillus salivarius Populations from Broiler Chickens To Determine the Influence of Farming Practices Sally A. Harrow, Velmurugu Ravindran, Ruth C. Butler, John W. Marshall, and Gerald W. Tannock Appl. Environ. Microbiol. November 2007 73: 7123-7127; published ahead of print September 21, 2007, doi:10.1128/AEM.01289-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Diversity Analysis of Dairy and Nondairy Lactococcus lactis Isolates, Using a Novel Multilocus Sequence Analysis Scheme and (GTG)5-PCR Fingerprinting Jan L. W. Rademaker, Hélène Herbet, Marjo J. C. Starrenburg, Sabri M. Naser, Dirk Gevers, William J. Kelly, Jeroen Hugenholtz, Jean Swings, and Johan E. T. van Hylckama Vlieg Appl. Environ. Microbiol. November 2007 73: 7128-7137; published ahead of print September 21, 2007, doi:10.1128/AEM.01017-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Culturable Psychrotrophic Bacterial Communities in Raw Milk and Their Proteolytic and Lipolytic Traits Elionora Hantsis-Zacharov and Malka Halpern Appl. Environ. Microbiol. November 2007 73: 7162-7168; published ahead of print September 21, 2007, doi:10.1128/AEM.00866-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Prevalence of Enterotoxigenic Clostridium perfringens Isolates in Pittsburgh (Pennsylvania) Area Soils and Home Kitchens Jihong Li, Sameera Sayeed, and Bruce A. McClane Appl. Environ. Microbiol. November 2007 73: 7218-7224; published ahead of print September 28, 2007, doi:10.1128/AEM.01075-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Synthesis of -Aminobutyric Acid by Lactic Acid Bacteria Isolated from a Variety of Italian Cheeses S. Siragusa, M. De Angelis, R. Di Cagno, C. G. Rizzello, R. Coda, and M. Gobbetti Appl. Environ. Microbiol. November 2007 73: 7283-7290; published ahead of print September 21, 2007, doi:10.1128/AEM.01064-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Differences in Virulence among Escherichia coli O157:H7 Strains Isolated from Humans during Disease Outbreaks and from Healthy Cattle Diane R. Baker, Rodney A. Moxley, Mike B. Steele, Jeffrey T. LeJeune, Jane Christopher-Hennings, Ding-Geng Chen, Philip R. Hardwidge, and David H. Francis Appl. Environ. Microbiol. November 2007 73: 7338-7346; published ahead of print September 21, 2007, doi:10.1128/AEM.00755-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Development of a Method for Detection of Giardia duodenalis Cysts on Lettuce and for Simultaneous Analysis of Salad Products for the Presence of Giardia Cysts and Cryptosporidium Oocysts N. Cook, R. A. B. Nichols, N. Wilkinson, C. A. Paton, K. Barker, and H. V. Smith Appl. Environ. Microbiol. November 2007 73: 7388-7391; published ahead of print September 21, 2007, doi:10.1128/AEM.00552-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Evaluation of Two DNA Template Preparation Methods for Post-Immunomagnetic Separation Detection of Cryptosporidium parvum in Foods and Beverages by PCR Christian D. Frazar and Palmer A. Orlandi Appl. Environ. Microbiol. November 2007 73: 7474-7476; published ahead of print September 21, 2007, doi:10.1128/AEM.01652-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Evaluation of Postharvest-Processed Oysters by Using PCR-Based Most-Probable-Number Enumeration of Vibrio vulnificus Bacteria Anita C. Wright, Victor Garrido, Georgia Debuex, Melissa Farrell-Evans, Archana A. Mudbidri, and W. Steven Otwell Appl. Environ. Microbiol. November 2007 73: 7477-7481; published ahead of print September 28, 2007, doi:10.1128/AEM.01118-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Enzymology and Protein Engineering:

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Exploration of New Geometries in Cellulosome-Like Chimeras Florence Mingardon, Angélique Chanal, Chantal Tardif, Edward A. Bayer, and Henri-Pierre Fierobe Appl. Environ. Microbiol. November 2007 73: 7138-7149; published ahead of print September 28, 2007, doi:10.1128/AEM.01306-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

LambdaSa1 and LambdaSa2 Prophage Lysins of Streptococcus agalactiae David G. Pritchard, Shengli Dong, Marion C. Kirk, Robert T. Cartee, and John R. Baker Appl. Environ. Microbiol. November 2007 73: 7150-7154; published ahead of print September 28, 2007, doi:10.1128/AEM.01783-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Enhancement of the Stability of a Prolipase from Rhizopus oryzae toward Aldehydes by Saturation Mutagenesis Mirella Di Lorenzo, Aurelio Hidalgo, Rafael Molina, Juan A. Hermoso, Domenico Pirozzi, and Uwe T. Bornscheuer Appl. Environ. Microbiol. November 2007 73: 7291-7299; published ahead of print September 21, 2007, doi:10.1128/AEM.01176-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Design and Application of Highly Responsive Fluorescence Resonance Energy Transfer Biosensors for Detection of Sugar in Living Saccharomyces cerevisiae Cells Jae-Seok Ha, Jae Jun Song, Young-Mi Lee, Su-Jin Kim, Jung-Hoon Sohn, Chul-Soo Shin, and Seung-Goo Lee Appl. Environ. Microbiol. November 2007 73: 7408-7414; published ahead of print September 21, 2007, doi:10.1128/AEM.01080-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Sequential Aldol Condensation Catalyzed by Hyperthermophilic 2-Deoxy-D-Ribose-5-Phosphate Aldolase Haruhiko Sakuraba, Kazunari Yoneda, Kumiko Yoshihara, Kyoko Satoh, Ryushi Kawakami, Yoshihiro Uto, Hideaki Tsuge, Katsuyuki Takahashi, Hitoshi Hori, and Toshihisa Ohshima Appl. Environ. Microbiol. November 2007 73: 7427-7434; published ahead of print September 28, 2007, doi:10.1128/AEM.01101-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

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Microbial Ecology:

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Quantitative Distributions of Epsilonproteobacteria and a Sulfurimonas Subgroup in Pelagic Redoxclines of the Central Baltic Sea Jana Grote, Matthias Labrenz, Birgit Pfeiffer, Günter Jost, and Klaus Jürgens Appl. Environ. Microbiol. November 2007 73: 7155-7161; published ahead of print October 5, 2007, doi:10.1128/AEM.00466-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Phylogenetic Ecology of the Freshwater Actinobacteria acI Lineage Ryan J. Newton, Stuart E. Jones, Matthew R. Helmus, and Katherine D. McMahon Appl. Environ. Microbiol. November 2007 73: 7169-7176; published ahead of print September 7, 2007, doi:10.1128/AEM.00794-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Layered Structure of Bacterial and Archaeal Communities and Their In Situ Activities in Anaerobic Granules Hisashi Satoh, Yuki Miura, Ikuo Tsushima, and Satoshi Okabe Appl. Environ. Microbiol. November 2007 73: 7300-7307; published ahead of print September 28, 2007, doi:10.1128/AEM.01426-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Molecular Characterization of Diazotrophic and Denitrifying Bacteria Associated with Mangrove Roots Ana L. Flores-Mireles, Stephen C. Winans, and Gina Holguin Appl. Environ. Microbiol. November 2007 73: 7308-7321; published ahead of print September 7, 2007, doi:10.1128/AEM.01892-06 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Diversity of ndo Genes in Mangrove Sediments Exposed to Different Sources of Polycyclic Aromatic Hydrocarbon Pollution Newton C. Marcial Gomes, Ludmila R. Borges, Rodolfo Paranhos, Fernando N. Pinto, Ellen Krögerrecklenfort, Leda C. S. Mendonça-Hagler, and Kornelia Smalla Appl. Environ. Microbiol. November 2007 73: 7392-7399; published ahead of print September 28, 2007, doi:10.1128/AEM.01099-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Mucosa-Associated Bacterial Diversity in Relation to Human Terminal Ileum and Colonic Biopsy Samples Shakil Ahmed, George T. Macfarlane, Alemu Fite, Andrew J. McBain, Peter Gilbert, and Sandra Macfarlane Appl. Environ. Microbiol. November 2007 73: 7435-7442; published ahead of print September 21, 2007, doi:10.1128/AEM.01143-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Public Health Microbiology:

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Thermal Inactivation of Foot-and-Mouth Disease Viruses in Suspension Somjai Kamolsiripichaiporn, Supatsak Subharat, Romphruke Udon, Panithan Thongtha, and Suphachai Nuanualsuwan Appl. Environ. Microbiol. November 2007 73: 7177-7184; published ahead of print July 27, 2007, doi:10.1128/AEM.00629-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Impact of Zooplankton Grazing on the Excystation, Viability, and Infectivity of the Protozoan Pathogens Cryptosporidium parvum and Giardia lamblia S. J. Connelly, E. A. Wolyniak, K. L. Dieter, C. E. Williamson, and K. L. Jellison Appl. Environ. Microbiol. November 2007 73: 7277-7282; published ahead of print September 14, 2007, doi:10.1128/AEM.01206-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Environmental Monitoring of Mycobacterium bovis in Badger Feces and Badger Sett Soil by Real-Time PCR, as Confirmed by Immunofluorescence, Immunocapture, and Cultivation F. P. Sweeney, O. Courtenay, V. Hibberd, R. G. Hewinson, L. A. Reilly, W. H. Gaze, and E. M. H. Wellington Appl. Environ. Microbiol. November 2007 73: 7471-7473; published ahead of print September 28, 2007, doi:10.1128/AEM.00978-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Mycology:

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Comparison of Ergot Alkaloid Biosynthesis Gene Clusters in Claviceps Species Indicates Loss of Late Pathway Steps in Evolution of C. fusiformis Nicole Lorenz, Ella V. Wilson, Caroline Machado, Christopher L. Schardl, and Paul Tudzynski Appl. Environ. Microbiol. November 2007 73: 7185-7191; published ahead of print August 24, 2007, doi:10.1128/AEM.01040-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Transient Marker System for Iterative Gene Targeting of a Prototrophic Fungus Michael L. Nielsen, Willem A. de Jongh, Susan L. Meijer, Jens Nielsen, and Uffe H. Mortensen Appl. Environ. Microbiol. November 2007 73: 7240-7245; published ahead of print October 5, 2007, doi:10.1128/AEM.01839-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Aspergillus Volatiles Regulate Aflatoxin Synthesis and Asexual Sporulation in Aspergillus parasiticus Ludmila V. Roze, Randolph M. Beaudry, Anna E. Arthur, Ana M. Calvo, and John E. Linz Appl. Environ. Microbiol. November 2007 73: 7268-7276; published ahead of print September 21, 2007, doi:10.1128/AEM.00801-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Physiology and Biotechnology:

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Genomic and Biochemical Studies Demonstrating the Absence of an Alkane-Producing Phenotype in Vibrio furnissii M1 Lawrence P. Wackett, Janice A. Frias, Jennifer L. Seffernick, David J. Sukovich, and Stephan M. Cameron Appl. Environ. Microbiol. November 2007 73: 7192-7198; published ahead of print October 5, 2007, doi:10.1128/AEM.01785-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Engineering of Artificial Plant Cytochrome P450 Enzymes for Synthesis of Isoflavones by Escherichia coli Effendi Leonard and Mattheos A. G. Koffas Appl. Environ. Microbiol. November 2007 73: 7246-7251; published ahead of print September 28, 2007, doi:10.1128/AEM.01411-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Regulation of a Novel Acidithiobacillus caldus Gene Cluster Involved in Metabolism of Reduced Inorganic Sulfur Compounds Olena I. Rzhepishevska, Jorge Valdés, Liucija Marcinkeviciene, Camelia Algora Gallardo, Rolandas Meskys, Violaine Bonnefoy, David S. Holmes, and Mark Dopson Appl. Environ. Microbiol. November 2007 73: 7367-7372; published ahead of print September 14, 2007, doi:10.1128/AEM.01497-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

N-(3-Hydroxyhexanoyl)-L-Homoserine Lactone Is the Biologically Relevant Quormone That Regulates the phz Operon of Pseudomonas chlororaphis Strain 30-84 Sharik R. Khan, Jake Herman, Jessica Krank, Natalie J. Serkova, Mair E. A. Churchill, Hiroaki Suga, and Stephen K. Farrand Appl. Environ. Microbiol. November 2007 73: 7443-7455; published ahead of print October 5, 2007, doi:10.1128/AEM.01354-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

The Cyclic AMP Receptor Protein Modulates Colonial Morphology in Vibrio cholerae Weili Liang, Anisia J. Silva, and Jorge A. Benitez Appl. Environ. Microbiol. November 2007 73: 7482-7487; published ahead of print October 5, 2007, doi:10.1128/AEM.01564-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Evolutionary and Genomic Microbiology:

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Genomic Diversity in Staphylococcus xylosus Emilie Dordet-Frisoni, Géraud Dorchies, Cécilia De Araujo, Régine Talon, and Sabine Leroy Appl. Environ. Microbiol. November 2007 73: 7199-7209; published ahead of print September 21, 2007, doi:10.1128/AEM.01629-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Comparison of Cyanopeptolin Genes in Planktothrix, Microcystis, and Anabaena Strains: Evidence for Independent Evolution within Each Genus Trine B. Rounge, Thomas Rohrlack, Ave Tooming-Klunderud, Tom Kristensen, and Kjetill S. Jakobsen Appl. Environ. Microbiol. November 2007 73: 7322-7330; published ahead of print October 5, 2007, doi:10.1128/AEM.01475-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Genomic Deletion Marking an Emerging Subclone of Francisella tularensis subsp. holarctica in France and the Iberian Peninsula M. P. Dempsey, M. Dobson, C. Zhang, M. Zhang, C. Lion, C. B. Gutiérrez-Martín, P. C. Iwen, P. D. Fey, M. E. Olson, D. Niemeyer, S. Francesconi, R. Crawford, M. Stanley, J. Rhodes, D. M. Wagner, A. J. Vogler, D. Birdsell, P. Keim, A. Johansson, S. H. Hinrichs, and A. K. Benson Appl. Environ. Microbiol. November 2007 73: 7465-7470; published ahead of print September 21, 2007, doi:10.1128/AEM.00646-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

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Plant Microbiology:

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Influence of Native Microbiota on Survival of Ralstonia solanacearum Phylotype II in River Water Microcosms Belén Álvarez, María M. López, and Elena G. Biosca Appl. Environ. Microbiol. November 2007 73: 7210-7217; published ahead of print September 14, 2007, doi:10.1128/AEM.00960-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Detection and Visualization of an Exopolysaccharide Produced by Xylella fastidiosa In Vitro and In Planta M. Caroline Roper, L. Carl Greve, John M. Labavitch, and Bruce C. Kirkpatrick Appl. Environ. Microbiol. November 2007 73: 7252-7258; published ahead of print September 7, 2007, doi:10.1128/AEM.00895-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Diversity of Cultivated Endophytic Bacteria from Sugarcane: Genetic and Biochemical Characterization of Burkholderia cepacia Complex Isolates Rodrigo Mendes, Aline A. Pizzirani-Kleiner, Welington L. Araujo, and Jos M. Raaijmakers Appl. Environ. Microbiol. November 2007 73: 7259-7267; published ahead of print September 28, 2007, doi:10.1128/AEM.01222-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Genetics and Molecular Biology:

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Biosurfactant Production and Surface Translocation Are Regulated by PlcR in Bacillus cereus ATCC 14579 under Low-Nutrient Conditions Yi-Huang Hsueh, Eileen B. Somers, Didier Lereclus, Emilia Ghelardi, and Amy C. Lee Wong Appl. Environ. Microbiol. November 2007 73: 7225-7231; published ahead of print October 5, 2007, doi:10.1128/AEM.00690-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Comparative Transcriptome Analysis of Methylibium petroleiphilum PM1 Exposed to the Fuel Oxygenates Methyl tert-Butyl Ether and Ethanol Krassimira R. Hristova, Radomir Schmidt, Anu Y. Chakicherla, Tina C. Legler, Janice Wu, Patrick S. Chain, Kate M. Scow, and Staci R. Kane Appl. Environ. Microbiol. November 2007 73: 7347-7357; published ahead of print September 21, 2007, doi:10.1128/AEM.01604-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Morphological and Genetic Diversity of Temperate Phages in Clostridium difficile Louis-Charles Fortier and Sylvain Moineau Appl. Environ. Microbiol. November 2007 73: 7358-7366; published ahead of print September 21, 2007, doi:10.1128/AEM.00582-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Analysis of the Mycosamine Biosynthesis and Attachment Genes in the Nystatin Biosynthetic Gene Cluster of Streptomyces noursei ATCC 11455 Aina Nedal, Håvard Sletta, Trygve Brautaset, Sven E. F. Borgos, Olga N. Sekurova, Trond E. Ellingsen, and Sergey B. Zotchev Appl. Environ. Microbiol. November 2007 73: 7400-7407; published ahead of print September 28, 2007, doi:10.1128/AEM.01122-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Genetically Closely Related but Phenotypically Divergent Trichoderma Species Cause Green Mold Disease in Oyster Mushroom Farms Worldwide Monika Komon-Zelazowska, John Bissett, Doustmorad Zafari, Lóránt Hatvani, László Manczinger, Sheri Woo, Matteo Lorito, László Kredics, Christian P. Kubicek, and Irina S. Druzhinina Appl. Environ. Microbiol. November 2007 73: 7415-7426; published ahead of print September 7, 2007, doi:10.1128/AEM.01059-07 [Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

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Methods:

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Evaluation of the Staphylococcus aureus Class C Nonspecific Acid Phosphatase (SapS) as a Reporter for Gene Expression and Protein Secretion in Gram-Negative and Gram-Positive Bacteria Erika du Plessis, Jacques Theron, Eldie Berger, and Maureen Louw Appl. Environ. Microbiol. November 2007 73: 7232-7239; published ahead of print September 28, 2007, doi:10.1128/AEM.01030-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Multiplex Assay Based on Single-Nucleotide Polymorphisms for Rapid Identification of Brucella Isolates at the Species Level Julie C. Scott, Mark S. Koylass, Michael R. Stubberfield, and Adrian M. Whatmore Appl. Environ. Microbiol. November 2007 73: 7331-7337; published ahead of print September 21, 2007, doi:10.1128/AEM.00976-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Development of an Internal Control for Evaluation and Standardization of a Quantitative PCR Assay for Detection of Helicobacter pylori in Drinking Water Keya Sen, Nancy A. Schable, and Dennis J. Lye Appl. Environ. Microbiol. November 2007 73: 7380-7387; published ahead of print September 28, 2007, doi:10.1128/AEM.00687-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Design and Performance of a 16S rRNA-Targeted Oligonucleotide Probe for Detection of Members of the Genus Bdellovibrio by Fluorescence In Situ Hybridization Khaled K. Mahmoud, Damian McNeely, Chelsea Elwood, and Susan F. Koval Appl. Environ. Microbiol. November 2007 73: 7488-7493; published ahead of print September 28, 2007, doi:10.1128/AEM.01112-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Biodegradation:

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Identification of opdA, a Gene Involved in Biodegradation of the Endocrine Disrupter Octylphenol A. W. Porter and A. G. Hay Appl. Environ. Microbiol. November 2007 73: 7373-7379; published ahead of print September 21, 2007, doi:10.1128/AEM.01478-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

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Environmental Microbiology:

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Detection of Escherichia coli in Biofilms from Pipe Samples and Coupons in Drinking Water Distribution Networks T. Juhna, D. Birzniece, S. Larsson, D. Zulenkovs, A. Sharipo, N. F. Azevedo, F. Ménard-Szczebara, S. Castagnet, C. Féliers, and C. W. Keevil Appl. Environ. Microbiol. November 2007 73: 7456-7464; published ahead of print August 24, 2007, doi:10.1128/AEM.00845-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

Comparison of Direct Genome Restriction Enzyme Analysis and Pulsed-Field Gel Electrophoresis for Typing of Vibrio vulnificus and Their Correspondence with Multilocus Sequence Typing Data Narjol González-Escalona, Brooke Whitney, Lee-Ann Jaykus, and Angelo DePaola Appl. Environ. Microbiol. November 2007 73: 7494-7500; published ahead of print August 24, 2007, doi:10.1128/AEM.00738-07 [Abstract] [Full Text] [PDF] [Reprints and Permissions]

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.