AEM -- Table of Contents (April 1 2007, 73 [7])

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Contents: April 2007, Volume 73, Issue 7

       Public Health Microbiology

       Food Microbiology

       Physiology and Biotechnology

       Invertebrate Microbiology

       Genetics and Molecular Biology

       Microbial Ecology

       Geomicrobiology

       Mycology

       Evolutionary and Genomic Microbiology

       Methods

       Environmental Microbiology

       Enzymology and Protein Engineering

       Letters to the Editor

       Author's Correction

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Public Health Microbiology:

Characterization of an Escherichia coli O157:H7 Plasmid O157 Deletion Mutant and Its Survival and Persistence in Cattle
Ji Youn Lim, Haiqing Sheng, Keun Seok Seo, Yong Ho Park, and Carolyn J. Hovde
Appl. Environ. Microbiol. April 2007 73: 2037-2047; published ahead of print February 2, 2007, doi:10.1128/AEM.02643-06
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Reaerosolization of Fluidized Spores in Ventilation Systems
Paula Krauter and Arthur Biermann
Appl. Environ. Microbiol. April 2007 73: 2165-2172; published ahead of print February 9, 2007, doi:10.1128/AEM.02289-06
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Prevalence of Shiga Toxin-Producing Escherichia coli stx₁, stx₂, eaeA, and rfbE Genes and Survival of E. coli O157:H7 in Manure from Organic and Low-Input Conventional Dairy Farms
Eelco Franz, Michel M. Klerks, Oscar J. De Vos, Aad J. Termorshuizen, and Ariena H. C. van Bruggen
Appl. Environ. Microbiol. April 2007 73: 2180-2190; published ahead of print February 2, 2007, doi:10.1128/AEM.01950-06
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Comparison of Levels of Inactivation of Two Isolates of Giardia lamblia Cysts by UV Light
Dong Li, Stephen A. Craik, Daniel W. Smith, and Miodrag Belosevic
Appl. Environ. Microbiol. April 2007 73: 2218-2223; published ahead of print February 2, 2007, doi:10.1128/AEM.02024-06
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Molecular Fingerprinting of the Fecal Microbiota of Children Raised According to Different Lifestyles
Johan Dicksved, Helen Flöistrup, Anna Bergström, Magnus Rosenquist, Göran Pershagen, Annika Scheynius, Stefan Roos, Johan S. Alm, Lars Engstrand, Charlotte Braun-Fahrländer, Erika von Mutius, and Janet K. Jansson
Appl. Environ. Microbiol. April 2007 73: 2284-2289; published ahead of print February 9, 2007, doi:10.1128/AEM.02223-06
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Isolation of Potentially Pathogenic Escherichia coli O157:H7 from the Ganges River
Steve Hamner, Susan C. Broadaway, Veer Bhadra Mishra, Anshuman Tripathi, Rajesh Kumar Mishra, Elinor Pulcini, Barry H. Pyle, and Timothy E. Ford
Appl. Environ. Microbiol. April 2007 73: 2369-2372; published ahead of print February 9, 2007, doi:10.1128/AEM.00141-07
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Expression Profiles of Bovine Genes in the Rectoanal Junction Mucosa during Colonization with Escherichia coli O157:H7
Jie Li and Carolyn J. Hovde
Appl. Environ. Microbiol. April 2007 73: 2380-2385; published ahead of print February 9, 2007, doi:10.1128/AEM.02262-06
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Food Microbiology:

Antisense-RNA-Mediated Decreased Synthesis of Small, Acid-Soluble Spore Proteins Leads to Decreased Resistance of Clostridium perfringens Spores to Moist Heat and UV Radiation
Deepa Raju, Peter Setlow, and Mahfuzur R. Sarker
Appl. Environ. Microbiol. April 2007 73: 2048-2053; published ahead of print January 26, 2007, doi:10.1128/AEM.02500-06
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Historical and Contemporary NaCl Concentrations Affect the Duration and Distribution of Lag Times from Individual Spores of Nonproteolytic Clostridium botulinum
Martin D. Webb, Carmen Pin, Michael W. Peck, and Sandra C. Stringer
Appl. Environ. Microbiol. April 2007 73: 2118-2127; published ahead of print February 2, 2007, doi:10.1128/AEM.01744-06
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Clonal Population Structure and Specific Genotypes of Multidrug-Resistant Campylobacter coli from Turkeys
C. B. D'lima, W. G. Miller, R. E. Mandrell, S. L. Wright, R. M. Siletzky, D. K. Carver, and S. Kathariou
Appl. Environ. Microbiol. April 2007 73: 2156-2164; published ahead of print February 9, 2007, doi:10.1128/AEM.02346-06
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Gamma Study of pH, Nitrite, and Salt Inhibition of Aeromonas hydrophila
Ronald J. W. Lambert and Eva Bidlas
Appl. Environ. Microbiol. April 2007 73: 2239-2246; published ahead of print February 9, 2007, doi:10.1128/AEM.02013-06
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Degradation of N-Acyl-L-Homoserine Lactones by Bacillus cereus in Culture Media and Pork Extract
Maria Stella Medina-Martínez, Mieke Uyttendaele, Andreja Rajkovic, Pol Nadal, and Johan Debevere
Appl. Environ. Microbiol. April 2007 73: 2329-2332; published ahead of print February 9, 2007, doi:10.1128/AEM.01993-06
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Simultaneous Detection of Pseudomonas fragi, P. lundensis, and P. putida from Meat by Use of a Multiplex PCR Assay Targeting the carA Gene
Danilo Ercolini, Federica Russo, Giuseppe Blaiotta, Olimpia Pepe, Gianluigi Mauriello, and Francesco Villani
Appl. Environ. Microbiol. April 2007 73: 2354-2359; published ahead of print February 9, 2007, doi:10.1128/AEM.02603-06
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Physiology and Biotechnology:

Efficient Synthesis of Simvastatin by Use of Whole-Cell Biocatalysis
Xinkai Xie and Yi Tang
Appl. Environ. Microbiol. April 2007 73: 2054-2060; published ahead of print February 2, 2007, doi:10.1128/AEM.02820-06
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Transposon Mutagenesis To Improve the Growth of Recombinant Saccharomyces cerevisiae on D-Xylose
Haiying Ni, José M. Laplaza, and Thomas W. Jeffries
Appl. Environ. Microbiol. April 2007 73: 2061-2066; published ahead of print February 2, 2007, doi:10.1128/AEM.02564-06
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L-Valine Production with Pyruvate Dehydrogenase Complex-Deficient Corynebacterium glutamicum
Bastian Blombach, Mark E. Schreiner, Jirí Holátko, Tobias Bartek, Marco Oldiges, and Bernhard J. Eikmanns
Appl. Environ. Microbiol. April 2007 73: 2079-2084; published ahead of print February 9, 2007, doi:10.1128/AEM.02826-06
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Effect of Lignocellulose-Derived Inhibitors on Growth of and Ethanol Production by Growth-Arrested Corynebacterium glutamicum R
Shinsuke Sakai, Yoshiki Tsuchida, Shohei Okino, Osamu Ichihashi, Hideo Kawaguchi, Takashi Watanabe, Masayuki Inui, and Hideaki Yukawa
Appl. Environ. Microbiol. April 2007 73: 2349-2353; published ahead of print February 2, 2007, doi:10.1128/AEM.02880-06
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Salt-Inducible Bionylon Polymer from Bacillus megaterium
Kazuki Shimizu, Hisaaki Nakamura, and Makoto Ashiuchi
Appl. Environ. Microbiol. April 2007 73: 2378-2379; published ahead of print February 9, 2007, doi:10.1128/AEM.02686-06
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Enhancement of Biodesulfurization in Two-Liquid Systems by Heterogeneous Expression of Vitreoscilla Hemoglobin
Xiaochao Xiong, Jianmin Xing, Xin Li, Xuejing Bai, Wangliang Li, Yuguang Li, and Huizhou Liu
Appl. Environ. Microbiol. April 2007 73: 2394-2397; published ahead of print February 9, 2007, doi:10.1128/AEM.02372-06
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Invertebrate Microbiology:

Vertical Transmission of a Phylogenetically Complex Microbial Consortium in the Viviparous Sponge Ircinia felix
Susanne Schmitt, Jeremy B. Weisz, Niels Lindquist, and Ute Hentschel
Appl. Environ. Microbiol. April 2007 73: 2067-2078; published ahead of print February 2, 2007, doi:10.1128/AEM.01944-06
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Characterization of the Population of the Sulfur-Oxidizing Symbiont of Codakia orbicularis (Bivalvia, Lucinidae) by Single-Cell Analyses
Audrey Caro, Olivier Gros, Patrice Got, Rutger De Wit, and Marc Troussellier
Appl. Environ. Microbiol. April 2007 73: 2101-2109; published ahead of print January 26, 2007, doi:10.1128/AEM.01683-06
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Widespread Occurrence and Genomic Context of Unusually Small Polyketide Synthase Genes in Microbial Consortia Associated with Marine Sponges
Lars Fieseler, Ute Hentschel, Lubomir Grozdanov, Andreas Schirmer, Gaiping Wen, Matthias Platzer, Sinisa Hrvatin, Daniel Butzke, Katrin Zimmermann, and Jörn Piel
Appl. Environ. Microbiol. April 2007 73: 2144-2155; published ahead of print February 9, 2007, doi:10.1128/AEM.02260-06
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Genetic Diversity and Potential Function of Microbial Symbionts Associated with Newly Discovered Species of Osedax Polychaete Worms
Shana K. Goffredi, Shannon B. Johnson, and Robert C. Vrijenhoek
Appl. Environ. Microbiol. April 2007 73: 2314-2323; published ahead of print February 2, 2007, doi:10.1128/AEM.01986-06
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Genetics and Molecular Biology:

Characterization of the Sporulation Control Protein SsgA by Use of an Efficient Method To Create and Screen Random Mutant Libraries in Streptomycetes
Bjørn A. Traag, Nicolas Seghezzi, Erik Vijgenboom, and Gilles P. van Wezel
Appl. Environ. Microbiol. April 2007 73: 2085-2092; published ahead of print February 9, 2007, doi:10.1128/AEM.02755-06
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Novel Tetracycline Resistance Determinant Isolated from an Environmental Strain of Serratia marcescens
Stuart A. Thompson, Elizabeth V. Maani, Angela H. Lindell, Catherine J. King, and J. Vaun McArthur
Appl. Environ. Microbiol. April 2007 73: 2199-2206; published ahead of print February 16, 2007, doi:10.1128/AEM.02511-06
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Weissellicin 110, a Newly Discovered Bacteriocin from Weissella cibaria 110, Isolated from Plaa-Som, a Fermented Fish Product from Thailand
Sirinat Srionnual, Fujitoshi Yanagida, Li-Hsiu Lin, Kuang-Nan Hsiao, and Yi-sheng Chen
Appl. Environ. Microbiol. April 2007 73: 2247-2250; published ahead of print February 9, 2007, doi:10.1128/AEM.02484-06
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Nickel-Resistant Determinant from Leptospirillum ferriphilum
Jian Tian, Ningfeng Wu, Jiang Li, Yajie Liu, Jun Guo, Bin Yao, and Yunliu Fan
Appl. Environ. Microbiol. April 2007 73: 2364-2368; published ahead of print February 9, 2007, doi:10.1128/AEM.00207-07
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Detection and Identification by PCR of a Highly Virulent Phylogenetic Subgroup among Extraintestinal Pathogenic Escherichia coli B2 Strains
Philippe Bidet, Arnaud Metais, Farah Mahjoub-Messai, Lionel Durand, Marie Dehem, Yannick Aujard, Edouard Bingen, Xavier Nassif, and Stéphane Bonacorsi
Appl. Environ. Microbiol. April 2007 73: 2373-2377; published ahead of print February 9, 2007, doi:10.1128/AEM.02341-06
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Microbial Ecology:

Diversity, Activity, and Abundance of Sulfate-Reducing Bacteria in Saline and Hypersaline Soda Lakes
Mirjam Foti, Dimitry Y. Sorokin, Bart Lomans, Marc Mussman, Elena E. Zacharova, Nikolay V. Pimenov, J. Gijs Kuenen, and Gerard Muyzer
Appl. Environ. Microbiol. April 2007 73: 2093-2100; published ahead of print February 16, 2007, doi:10.1128/AEM.02622-06
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Quantitative Real-Time PCR Detection of Toxic Nodularia Cyanobacteria in the Baltic Sea
Kerttu Koskenniemi, Christina Lyra, Pirjo Rajaniemi-Wacklin, Jouni Jokela, and Kaarina Sivonen
Appl. Environ. Microbiol. April 2007 73: 2173-2179; published ahead of print February 2, 2007, doi:10.1128/AEM.02746-06
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Extractable Organic Components and Nutrients in Wastewater from Dairy Lagoons Influence the Growth and Survival of Escherichia coli O157:H7
Subbarao V. Ravva and Anna Korn
Appl. Environ. Microbiol. April 2007 73: 2191-2198; published ahead of print February 16, 2007, doi:10.1128/AEM.02213-06
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Ecology of the Microbial Community Removing Phosphate from Wastewater under Continuously Aerobic Conditions in a Sequencing Batch Reactor
Johwan Ahn, Sarah Schroeder, Michael Beer, Simon McIlroy, Ronald C. Bayly, John W. May, George Vasiliadis, and Robert J. Seviour
Appl. Environ. Microbiol. April 2007 73: 2257-2270; published ahead of print February 9, 2007, doi:10.1128/AEM.02080-06
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Consumption of Methane and CO₂ by Methanotrophic Microbial Mats from Gas Seeps of the Anoxic Black Sea
Tina Treude, Victoria Orphan, Katrin Knittel, Armin Gieseke, Christopher H. House, and Antje Boetius
Appl. Environ. Microbiol. April 2007 73: 2271-2283; published ahead of print February 2, 2007, doi:10.1128/AEM.02685-06
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The SAR92 Clade: an Abundant Coastal Clade of Culturable Marine Bacteria Possessing Proteorhodopsin
Ulrich Stingl, Russell A. Desiderio, Jang-Cheon Cho, Kevin L. Vergin, and Stephen J. Giovannoni
Appl. Environ. Microbiol. April 2007 73: 2290-2296; published ahead of print February 9, 2007, doi:10.1128/AEM.02559-06
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Campylobacter jejuni Strains Compete for Colonization in Broiler Chicks
Michael E. Konkel, Jeffrey E. Christensen, A. Singh Dhillon, Alison B. Lane, Rebekah Hare-Sanford, Dennis M. Schaberg, and Charles L. Larson
Appl. Environ. Microbiol. April 2007 73: 2297-2305; published ahead of print February 9, 2007, doi:10.1128/AEM.02193-06
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Shift from Acetoclastic to H₂-Dependent Methanogenesis in a West Siberian Peat Bog at Low pH Values and Isolation of an Acidophilic Methanobacterium Strain
O. R. Kotsyurbenko, M. W. Friedrich, M. V. Simankova, A. N. Nozhevnikova, P. N. Golyshin, K. N. Timmis, and R. Conrad
Appl. Environ. Microbiol. April 2007 73: 2344-2348; published ahead of print February 2, 2007, doi:10.1128/AEM.02413-06
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Geomicrobiology:

Selective Phylogenetic Analysis Targeting 16S rRNA Genes of Hyperthermophilic Archaea in the Deep-Subsurface Hot Biosphere
Hiroyuki Kimura, Jun-Ichiro Ishibashi, Harue Masuda, Kenji Kato, and Satoshi Hanada
Appl. Environ. Microbiol. April 2007 73: 2110-2117; published ahead of print February 2, 2007, doi:10.1128/AEM.02800-06
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Formation of Tellurium Nanocrystals during Anaerobic Growth of Bacteria That Use Te Oxyanions as Respiratory Electron Acceptors
Shaun M. Baesman, Thomas D. Bullen, James Dewald, Donghui Zhang, Seamus Curran, Farhana S. Islam, Terry J. Beveridge, and Ronald S. Oremland
Appl. Environ. Microbiol. April 2007 73: 2135-2143; published ahead of print February 2, 2007, doi:10.1128/AEM.02558-06
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Mycology:

The Antifungal Protein AFP from Aspergillus giganteus Inhibits Chitin Synthesis in Sensitive Fungi
Silke Hagen, Florentine Marx, Arthur F. Ram, and Vera Meyer
Appl. Environ. Microbiol. April 2007 73: 2128-2134; published ahead of print February 2, 2007, doi:10.1128/AEM.02497-06
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Evolutionary and Genomic Microbiology:

Survey of Genomic Diversity among Enterococcus faecalis Strains by Microarray-Based Comparative Genomic Hybridization
Ågot Aakra, O. Ludvig Nyquist, Lars Snipen, Turid S. Reiersen, and Ingolf F. Nes
Appl. Environ. Microbiol. April 2007 73: 2207-2217; published ahead of print January 12, 2007, doi:10.1128/AEM.01599-06
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Methods:

Novel Method for Rapid Assessment of Antibiotic Resistance in Escherichia coli Isolates from Environmental Waters by Use of a Modified Chromogenic Agar
A. J. Watkinson, G. R. Micalizzi, J. R. Bates, and S. D. Costanzo
Appl. Environ. Microbiol. April 2007 73: 2224-2229; published ahead of print February 2, 2007, doi:10.1128/AEM.02099-06
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Green Autofluorescence in Dinoflagellates, Diatoms, and Other Microalgae and Its Implications for Vital Staining and Morphological Studies
Ying Zhong Tang and Fred C. Dobbs
Appl. Environ. Microbiol. April 2007 73: 2306-2313; published ahead of print February 2, 2007, doi:10.1128/AEM.01741-06
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Detection of Low-Copy-Number Genomic DNA Sequences in Individual Bacterial Cells by Using Peptide Nucleic Acid-Assisted Rolling-Circle Amplification and Fluorescence In Situ Hybridization
Irina Smolina, Charles Lee, and Maxim Frank-Kamenetskii
Appl. Environ. Microbiol. April 2007 73: 2324-2328; published ahead of print February 9, 2007, doi:10.1128/AEM.02038-06
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Rapid Screening Method for Analyzing the Conjugated Linoleic Acid Production Capabilities of Bacterial Cultures
E. Barrett, R. P. Ross, G. F. Fitzgerald, and C. Stanton
Appl. Environ. Microbiol. April 2007 73: 2333-2337; published ahead of print February 2, 2007, doi:10.1128/AEM.01855-06
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Comparison of a Reporter Assay and Immunomagnetic Separation Real-Time Reverse Transcription-PCR for the Detection of Enteroviruses in Seeded Environmental Water Samples
Yu-Chen Hwang, Oymon M. Leong, Wilfred Chen, and Marylynn V. Yates
Appl. Environ. Microbiol. April 2007 73: 2338-2340; published ahead of print February 2, 2007, doi:10.1128/AEM.01758-06
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Water Transport in Intact Yeast Cells as Assessed by Fluorescence Self-Quenching
Graça Soveral, Ana Madeira, Maria C. Loureiro-Dias, and Teresa F. Moura
Appl. Environ. Microbiol. April 2007 73: 2341-2343; published ahead of print February 2, 2007, doi:10.1128/AEM.02519-06
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A Derepression System Based on the Bacillus subtilis Sporulation Pathway Offers Dynamic Control of Heterologous Gene Expression
Reindert Nijland, Jan-Willem Veening, and Oscar P. Kuipers
Appl. Environ. Microbiol. April 2007 73: 2390-2393; published ahead of print February 9, 2007, doi:10.1128/AEM.02266-06
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Environmental Microbiology:

Potential for Mercury Reduction by Microbes in the High Arctic
Alexandre J. Poulain, Sinéad M. Ní Chadhain, Parisa A. Ariya, Marc Amyot, Edenise Garcia, Peter G. C. Campbell, Gerben J. Zylstra, and Tamar Barkay
Appl. Environ. Microbiol. April 2007 73: 2230-2238; published ahead of print February 9, 2007, doi:10.1128/AEM.02701-06
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Phylogenetic Analysis of Bacteria Preserved in a Permafrost Ice Wedge for 25,000 Years
Taiki Katayama, Michiko Tanaka, Jun Moriizumi, Toshio Nakamura, Anatoli Brouchkov, Thomas A. Douglas, Masami Fukuda, Fusao Tomita, and Kozo Asano
Appl. Environ. Microbiol. April 2007 73: 2360-2363; published ahead of print February 9, 2007, doi:10.1128/AEM.01715-06
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New Insights into Microbial Oxidation of Antimony and Arsenic
Corinne R. Lehr, Des R. Kashyap, and Timothy R. McDermott
Appl. Environ. Microbiol. April 2007 73: 2386-2389; published ahead of print February 16, 2007, doi:10.1128/AEM.02789-06
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Enzymology and Protein Engineering:

Transgalactosylation in a Water-Solvent Biphasic Reaction System with ß-Galactosidase Displayed on the Surfaces of Bacillus subtilis Spores
Seok Joon Kwon, Heung-Chae Jung, and Jae-Gu Pan
Appl. Environ. Microbiol. April 2007 73: 2251-2256; published ahead of print December 22, 2006, doi:10.1128/AEM.01489-06
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Letters to the Editor:

Multiply Infected Vectors
F. E. McKenzie
Appl. Environ. Microbiol. April 2007 73: 2398
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Measuring Species Richness Based on Microbial Community Fingerprints: the Emperor Has No Clothes
Stephen J. Bent, Jacob D. Pierson, Larry J. Forney, R. Danovaro, G. M. Luna, A. Dell'Anno, and B. Pietrangeli
Appl. Environ. Microbiol. April 2007 73: 2399-2401;
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Predictions under Isothermal and Dynamically Changing Conditions
Yvan Le Marc, József Baranyi, and Hiroshi Fujikawa
Appl. Environ. Microbiol. April 2007 73: 2402-2403;
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Author's Correction:

Modeling Surface Growth of Escherichia coli on Agar Plates
Hiroshi Fujikawa and Satoshi Morozumi
Appl. Environ. Microbiol. April 2007 73: 2404
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.