AEM -- Table of Contents (May 15 2009, 75 [10])

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Contents: May 2009, Volume 75, Issue 10

       Public Health Microbiology

       Genetics and Molecular Biology

       Methods

       Biotechnology

       Food Microbiology

       Invertebrate Microbiology

       Enzymology and Protein Engineering

       Microbial Ecology

       Mycology

       Biodegradation

       Evolutionary and Genomic Microbiology

       Environmental Microbiology

       Plant Microbiology

       Physiology

       Letter to the Editor

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Public Health Microbiology:

Relatedness of Escherichia coli Strains with Different Susceptibility Phenotypes Isolated from Swine Feces during Ampicillin Treatment
D. Bibbal, V. Dupouy, M. F. Prère, P. L. Toutain, and A. Bousquet-Mélou
Appl. Environ. Microbiol. May 2009 75: 2999-3006; published ahead of print March 6, 2009, doi:10.1128/AEM.02143-08
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Molecular Epidemiology and Characterization of Campylobacter spp. Isolated from Wild Bird Populations in Northern England
Laura A. Hughes, Malcolm Bennett, Peter Coffey, John Elliott, Trevor R. Jones, Richard C. Jones, Angela Lahuerta-Marin, A. Howard Leatherbarrow, Kenny McNiffe, David Norman, Nicola J. Williams, and Julian Chantrey
Appl. Environ. Microbiol. May 2009 75: 3007-3015; published ahead of print March 13, 2009, doi:10.1128/AEM.02458-08
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Infection of Melanoplus sanguinipes Grasshoppers following Ingestion of Rangeland Plant Species Harboring Vesicular Stomatitis Virus
Barbara S. Drolet, Melissa A. Stuart, and Justin D. Derner
Appl. Environ. Microbiol. May 2009 75: 3029-3033; published ahead of print March 13, 2009, doi:10.1128/AEM.02368-08
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Failure To Detect Helicobacter pylori DNA in Drinking and Environmental Water in Dhaka, Bangladesh, Using Highly Sensitive Real-Time PCR Assays
Anders Janzon, Åsa Sjöling, Åsa Lothigius, Dilruba Ahmed, Firdausi Qadri, and Ann-Mari Svennerholm
Appl. Environ. Microbiol. May 2009 75: 3039-3044; published ahead of print March 20, 2009, doi:10.1128/AEM.02779-08
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Estimation of Pig Fecal Contamination in a River Catchment by Real-Time PCR Using Two Pig-Specific Bacteroidales 16S rRNA Genetic Markers
Sophie Mieszkin, Jean-Pierre Furet, Gérard Corthier, and Michèle Gourmelon
Appl. Environ. Microbiol. May 2009 75: 3045-3054; published ahead of print March 27, 2009, doi:10.1128/AEM.02343-08
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Percolation and Survival of Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in Soil Amended with Contaminated Dairy Manure or Slurry
Alexander V. Semenov, Leo van Overbeek, and Ariena H. C. van Bruggen
Appl. Environ. Microbiol. May 2009 75: 3206-3215; published ahead of print March 6, 2009, doi:10.1128/AEM.01791-08
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Molecular Investigations of Rickettsia helvetica Infection in Dogs, Foxes, Humans, and Ixodes Ticks
Felicitas S. Boretti, Andrea Perreten, Marina L. Meli, Valentino Cattori, Barbara Willi, Nicole Wengi, Sándor Hornok, Hanspeter Honegger, Daniel Hegglin, Roman Woelfel, Claudia E. Reusch, Hans Lutz, and Regina Hofmann-Lehmann
Appl. Environ. Microbiol. May 2009 75: 3230-3237; published ahead of print March 27, 2009, doi:10.1128/AEM.00220-09
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A Transferable 20-Kilobase Multiple Drug Resistance-Conferring R Plasmid (pKL0018) from a Fish Pathogen (Lactococcus garvieae) Is Highly Homologous to a Conjugative Multiple Drug Resistance-Conferring Enterococcal Plasmid
Takeshi Maki, Mudjekeewis D. Santos, Hidehiro Kondo, Ikuo Hirono, and Takashi Aoki
Appl. Environ. Microbiol. May 2009 75: 3370-3372; published ahead of print February 13, 2009, doi:10.1128/AEM.00039-09
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Genetics and Molecular Biology:

Distribution, Diversity, and Potential Mobility of Extrachromosomal Elements Related to the Bacillus anthracis pXO1 and pXO2 Virulence Plasmids
Xiaomin Hu, Géraldine Van der Auwera, Sophie Timmery, Lei Zhu, and Jacques Mahillon
Appl. Environ. Microbiol. May 2009 75: 3016-3028; published ahead of print March 20, 2009, doi:10.1128/AEM.02709-08
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Inactivation of the SauI Type I Restriction-Modification System Is Not Sufficient To Generate Staphylococcus aureus Strains Capable of Efficiently Accepting Foreign DNA
Helena Veiga and Mariana G. Pinho
Appl. Environ. Microbiol. May 2009 75: 3034-3038; published ahead of print March 20, 2009, doi:10.1128/AEM.01862-08
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Development and Application of a upp-Based Counterselective Gene Replacement System for the Study of the S-Layer Protein SlpX of Lactobacillus acidophilus NCFM
Yong Jun Goh, M. Andrea Azcárate-Peril, Sarah O'Flaherty, Evelyn Durmaz, Florence Valence, Julien Jardin, Sylvie Lortal, and Todd R. Klaenhammer
Appl. Environ. Microbiol. May 2009 75: 3093-3105; published ahead of print March 20, 2009, doi:10.1128/AEM.02502-08
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Bile-Inducible Efflux Transporter from Bifidobacterium longum NCC2705, Conferring Bile Resistance
Miguel Gueimonde, Christel Garrigues, Douwe van Sinderen, Clara G. de los Reyes-Gavilán, and Abelardo Margolles
Appl. Environ. Microbiol. May 2009 75: 3153-3160; published ahead of print March 20, 2009, doi:10.1128/AEM.00172-09
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Activation and Transfer of the Chromosomal Phage Resistance Mechanism AbiV in Lactococcus lactis
Jakob Haaber, Sylvain Moineau, and Karin Hammer
Appl. Environ. Microbiol. May 2009 75: 3358-3361; published ahead of print March 13, 2009, doi:10.1128/AEM.02538-08
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Methods:

Development of cpn60-Based Real-Time Quantitative PCR Assays for the Detection of 14 Campylobacter Species and Application to Screening of Canine Fecal Samples
Bonnie Chaban, Kristyna M. Musil, Chelsea G. Himsworth, and Janet E. Hill
Appl. Environ. Microbiol. May 2009 75: 3055-3061; published ahead of print March 20, 2009, doi:10.1128/AEM.00101-09
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Construction of a Gene Knockout System for Application in Paenibacillus alvei CCM 2051^T, Exemplified by the S-Layer Glycan Biosynthesis Initiation Enzyme WsfP
Kristof Zarschler, Bettina Janesch, Sonja Zayni, Christina Schäffer, and Paul Messner
Appl. Environ. Microbiol. May 2009 75: 3077-3085; published ahead of print March 20, 2009, doi:10.1128/AEM.00087-09
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Effects of Experimental Choices and Analysis Noise on Surveys of the "Rare Biosphere"
Timothy J. Hamp, W. Joe Jones, and Anthony A. Fodor
Appl. Environ. Microbiol. May 2009 75: 3263-3270; published ahead of print March 6, 2009, doi:10.1128/AEM.01931-08
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Cultivation of Fastidious Bacteria by Viability Staining and Micromanipulation in a Soil Substrate Membrane System
B. C. Ferrari and M. R. Gillings
Appl. Environ. Microbiol. May 2009 75: 3352-3354; published ahead of print March 20, 2009, doi:10.1128/AEM.02407-08
[Abstract] [Full Text] [PDF] [Reprints and Permissions]

Biotechnology:

Stereospecific Biotransformation of Dihydrodaidzein into (3S)-Equol by the Human Intestinal Bacterium Eggerthella Strain Julong 732
Mihyang Kim, Su-Il Kim, Jaehong Han, Xiu-Ling Wang, Dae-Geun Song, and Soo-Un Kim
Appl. Environ. Microbiol. May 2009 75: 3062-3068; published ahead of print March 20, 2009, doi:10.1128/AEM.02058-08
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Metabolic Engineering of Escherichia coli for Enhanced Production of (R)- and (S)-3-Hydroxybutyrate
Hsien-Chung Tseng, Collin H. Martin, David R. Nielsen, and Kristala L. Jones Prather
Appl. Environ. Microbiol. May 2009 75: 3137-3145; published ahead of print March 20, 2009, doi:10.1128/AEM.02667-08
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Engineering of 2,3-Butanediol Dehydrogenase To Reduce Acetoin Formation by Glycerol-Overproducing, Low-Alcohol Saccharomyces cerevisiae
Maryam Ehsani, Maria R. Fernández, Josep A. Biosca, Anne Julien, and Sylvie Dequin
Appl. Environ. Microbiol. May 2009 75: 3196-3205; published ahead of print March 27, 2009, doi:10.1128/AEM.02157-08
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Food Microbiology:

Influence of Stress on Single-Cell Lag Time and Growth Probability for Listeria monocytogenes in Half Fraser Broth
Claire Dupont and Jean-Christophe Augustin
Appl. Environ. Microbiol. May 2009 75: 3069-3076; published ahead of print March 20, 2009, doi:10.1128/AEM.02864-08
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prtH2, Not prtH, Is the Ubiquitous Cell Wall Proteinase Gene in Lactobacillus helveticus
M. Genay, L. Sadat, V. Gagnaire, and S. Lortal
Appl. Environ. Microbiol. May 2009 75: 3238-3249; published ahead of print March 13, 2009, doi:10.1128/AEM.02395-08
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Dual Role of the Oligopeptide Permease Opp3 during Growth of Staphylococcus aureus in Milk
Elise Borezée-Durant, Aurelia Hiron, Jean-Christophe Piard, and Vincent Juillard
Appl. Environ. Microbiol. May 2009 75: 3355-3357; published ahead of print March 13, 2009, doi:10.1128/AEM.02819-08
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Invertebrate Microbiology:

Enhancement of Bacillus thuringiensis Cry3Aa and Cry3Bb Toxicities to Coleopteran Larvae by a Toxin-Binding Fragment of an Insect Cadherin
Youngjin Park, Mohd Amir F. Abdullah, Milton D. Taylor, Khalidur Rahman, and Michael J. Adang
Appl. Environ. Microbiol. May 2009 75: 3086-3092; published ahead of print March 27, 2009, doi:10.1128/AEM.00268-09
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Negative Fitness Consequences and Transmission Dynamics of a Heritable Fungal Symbiont of a Parasitic Wasp
Cara M. Gibson and Martha S. Hunter
Appl. Environ. Microbiol. May 2009 75: 3115-3119; published ahead of print March 13, 2009, doi:10.1128/AEM.00361-09
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Identification of Natural Target Proteins Indicates Functions of a Serralysin-Type Metalloprotease, PrtA, in Anti-Immune Mechanisms
Gabriella Felföldi, Judit Marokházi, Miklós Képiró, and István Venekei
Appl. Environ. Microbiol. May 2009 75: 3120-3126; published ahead of print March 20, 2009, doi:10.1128/AEM.02271-08
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Acetobacter tropicalis Is a Major Symbiont of the Olive Fruit Fly (Bactrocera oleae)
Ilias Kounatidis, Elena Crotti, Panagiotis Sapountzis, Luciano Sacchi, Aurora Rizzi, Bessem Chouaia, Claudio Bandi, Alberto Alma, Daniele Daffonchio, Penelope Mavragani-Tsipidou, and Kostas Bourtzis
Appl. Environ. Microbiol. May 2009 75: 3281-3288; published ahead of print March 20, 2009, doi:10.1128/AEM.02933-08
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Effects of Long-Term Starvation on a Host Bivalve (Codakia orbicularis, Lucinidae) and Its Symbiont Population
Audrey Caro, Patrice Got, Marc Bouvy, Marc Troussellier, and Olivier Gros
Appl. Environ. Microbiol. May 2009 75: 3304-3313; published ahead of print April 3, 2009, doi:10.1128/AEM.02659-08
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Negative Correlation between Individual-Insect-Level Virulence and Colony-Level Virulence of Paenibacillus larvae, the Etiological Agent of American Foulbrood of Honeybees
Sandra Rauch, Ainura Ashiralieva, Kati Hedtke, and Elke Genersch
Appl. Environ. Microbiol. May 2009 75: 3344-3347; published ahead of print March 20, 2009, doi:10.1128/AEM.02839-08
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The Virulent Wolbachia Strain wMelPop Efficiently Establishes Somatic Infections in the Malaria Vector Anopheles gambiae
Chaoyang Jin, Xiaoxia Ren, and Jason L. Rasgon
Appl. Environ. Microbiol. May 2009 75: 3373-3376; published ahead of print March 27, 2009, doi:10.1128/AEM.00207-09
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Enzymology and Protein Engineering:

Cloning, Expression, Characterization, and Biocatalytic Investigation of the 4-Hydroxyacetophenone Monooxygenase from Pseudomonas putida JD1
Jessica Rehdorf, Christian L. Zimmer, and Uwe T. Bornscheuer
Appl. Environ. Microbiol. May 2009 75: 3106-3114; published ahead of print February 27, 2009, doi:10.1128/AEM.02707-08
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Exopolyphosphatases PPX1 and PPX2 from Corynebacterium glutamicum
Steffen N. Lindner, Sandra Knebel, Hendrik Wesseling, Siegfried M. Schoberth, and Volker F. Wendisch
Appl. Environ. Microbiol. May 2009 75: 3161-3170; published ahead of print March 20, 2009, doi:10.1128/AEM.02705-08
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Microbial Ecology:

Effect of Lake Trophic Status and Rooted Macrophytes on Community Composition and Abundance of Ammonia-Oxidizing Prokaryotes in Freshwater Sediments
Martina Herrmann, Aaron M. Saunders, and Andreas Schramm
Appl. Environ. Microbiol. May 2009 75: 3127-3136; published ahead of print March 20, 2009, doi:10.1128/AEM.02806-08
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Transfer of Antibiotic Resistance Marker Genes between Lactic Acid Bacteria in Model Rumen and Plant Environments
Niamh Toomey, Áine Monaghan, Séamus Fanning, and Declan Bolton
Appl. Environ. Microbiol. May 2009 75: 3146-3152; published ahead of print March 6, 2009, doi:10.1128/AEM.02471-08
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Changes in Benthic Denitrification, Nitrate Ammonification, and Anammox Process Rates and Nitrate and Nitrite Reductase Gene Abundances along an Estuarine Nutrient Gradient (the Colne Estuary, United Kingdom)
Liang F. Dong, Cindy J. Smith, Sokratis Papaspyrou, Andrew Stott, A. Mark Osborn, and David B. Nedwell
Appl. Environ. Microbiol. May 2009 75: 3171-3179; published ahead of print March 20, 2009, doi:10.1128/AEM.02511-08
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Differential Responses of Nitrate Reducer Community Size, Structure, and Activity to Tillage Systems
D. Chèneby, A. Brauman, B. Rabary, and L. Philippot
Appl. Environ. Microbiol. May 2009 75: 3180-3186; published ahead of print March 20, 2009, doi:10.1128/AEM.02338-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

High-Level Genetic Diversity but No Population Structure Inferred from Nuclear and Mitochondrial Markers of the Peritrichous Ciliate Carchesium polypinum in the Grand River Basin (North America)
E. Gentekaki and D. H. Lynn
Appl. Environ. Microbiol. May 2009 75: 3187-3195; published ahead of print March 20, 2009, doi:10.1128/AEM.00178-09
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Empirical Leucine-to-Carbon Conversion Factors for Estimating Heterotrophic Bacterial Production: Seasonality and Predictability in a Temperate Coastal Ecosystem
Alejandra Calvo-Díaz and Xosé Anxelu G. Morán
Appl. Environ. Microbiol. May 2009 75: 3216-3221; published ahead of print March 20, 2009, doi:10.1128/AEM.01570-08
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Fusobacterium nucleatum ATCC 10953 Requires Actinomyces naeslundii ATCC 43146 for Growth on Saliva in a Three-Species Community That Includes Streptococcus oralis 34
Saravanan Periasamy, Natalia I. Chalmers, Laurence Du-Thumm, and Paul E. Kolenbrander
Appl. Environ. Microbiol. May 2009 75: 3250-3257; published ahead of print March 13, 2009, doi:10.1128/AEM.02901-08
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Diversity of Bacteria in the Marine Sponge Aplysina fulva in Brazilian Coastal Waters
C. C. P. Hardoim, R. Costa, F. V. Araújo, E. Hajdu, R. Peixoto, U. Lins, A. S. Rosado, and J. D. van Elsas
Appl. Environ. Microbiol. May 2009 75: 3331-3343; published ahead of print March 20, 2009, doi:10.1128/AEM.02101-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Microbial Diversity of Septic Tank Effluent and a Soil Biomat
Jill Tomaras, Jason W. Sahl, Robert L. Siegrist, and John R. Spear
Appl. Environ. Microbiol. May 2009 75: 3348-3351; published ahead of print March 20, 2009, doi:10.1128/AEM.00560-08
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Cloning and In Situ Expression Studies of the Hydrogenobaculum Arsenite Oxidase Genes
Scott R. Clingenpeel, Seth D'Imperio, Harry Oduro, Greg K. Druschel, and Timothy R. McDermott
Appl. Environ. Microbiol. May 2009 75: 3362-3365; published ahead of print March 20, 2009, doi:10.1128/AEM.00336-09
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Mycology:

Differential Regulation and Posttranslational Processing of the Class II Hydrophobin Genes from the Biocontrol Fungus Hypocrea atroviridis
Marianna Mikus, Lóránt Hatvani, Torsten Neuhof, Monika Komon-Zelazowska, Ralf Dieckmann, Torsten Schwecke, Irina S. Druzhinina, Hans von Döhren, and Christian P. Kubicek
Appl. Environ. Microbiol. May 2009 75: 3222-3229; published ahead of print March 27, 2009, doi:10.1128/AEM.01764-08
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Genetic Diversity and Fitness of Fusarium graminearum Populations from Rice in Korea
Jungkwan Lee, In-Young Chang, Hun Kim, Sung-Hwan Yun, John F. Leslie, and Yin-Won Lee
Appl. Environ. Microbiol. May 2009 75: 3289-3295; published ahead of print March 20, 2009, doi:10.1128/AEM.02287-08
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Biodegradation:

Lateral Transfer of Genes for Hexahydro-1,3,5-Trinitro-1,3,5-Triazine (RDX) Degradation
Peter F. Andeer, David A. Stahl, Neil C. Bruce, and Stuart E. Strand
Appl. Environ. Microbiol. May 2009 75: 3258-3262; published ahead of print March 6, 2009, doi:10.1128/AEM.02396-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Evolutionary and Genomic Microbiology:

Genomic Regions Conserved in Lineage II Escherichia coli O157:H7 Strains
Marina Steele, Kim Ziebell, Yongxiang Zhang, Andrew Benson, Roger Johnson, Chad Laing, Eduardo Taboada, and Victor Gannon
Appl. Environ. Microbiol. May 2009 75: 3271-3280; published ahead of print March 27, 2009, doi:10.1128/AEM.02123-08
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Environmental Microbiology:

Candicidin Biosynthesis Gene Cluster Is Widely Distributed among Streptomyces spp. Isolated from the Sediments and the Neuston Layer of the Trondheim Fjord, Norway
Hanne Jørgensen, Espen Fjærvik, Sigrid Hakvåg, Per Bruheim, Harald Bredholt, Geir Klinkenberg, Trond E. Ellingsen, and Sergey B. Zotchev
Appl. Environ. Microbiol. May 2009 75: 3296-3303; published ahead of print March 13, 2009, doi:10.1128/AEM.02730-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Plant Microbiology:

Visual Evidence of Horizontal Gene Transfer between Plants and Bacteria in the Phytosphere of Transplastomic Tobacco
Alessandra Pontiroli, Aurora Rizzi, Pascal Simonet, Daniele Daffonchio, Timothy M. Vogel, and Jean-Michel Monier
Appl. Environ. Microbiol. May 2009 75: 3314-3322; published ahead of print March 27, 2009, doi:10.1128/AEM.02632-08
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Suppression of the Bacterial Spot Pathogen Xanthomonas euvesicatoria on Tomato Leaves by an Attenuated Mutant of Xanthomonas perforans
A. P. Hert, M. Marutani, M. T. Momol, P. D. Roberts, S. M. Olson, and J. B. Jones
Appl. Environ. Microbiol. May 2009 75: 3323-3330; published ahead of print March 13, 2009, doi:10.1128/AEM.02399-08
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Physiology:

Light-Dependent Transcriptional Regulation of Genes of Biogeochemical Interest in the Diploid and Haploid Life Cycle Stages of Emiliania huxleyi
Sophie Richier, Marie-Emmanuelle Kerros, Colomban de Vargas, Liti Haramaty, Paul G. Falkowski, and Jean-Pierre Gattuso
Appl. Environ. Microbiol. May 2009 75: 3366-3369; published ahead of print March 20, 2009, doi:10.1128/AEM.02737-08
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Letter to the Editor:

Potential Role for the 4,12 Antigen in the Prevalence of Clonal Salmonella Serovars in Poultry
T. W. Raymond Chia, Narelle Fegan, Gary A. Dykes, Stephan Huehn, Cornelia Bunge, Ernst Junker, Reiner Helmuth, and Burkhard Malorny
Appl. Environ. Microbiol. May 2009 75: 3377-3378;
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