AEM -- Table of Contents (June 1 2009, 75 [11])

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Contents: June 2009, Volume 75, Issue 11

       Public Health Microbiology

       Environmental Microbiology

       Plant Microbiology

       Genetics and Molecular Biology

       Invertebrate Microbiology

       Biotechnology

       Food Microbiology

       Microbial Ecology

       Enzymology and Protein Engineering

       Methods

       Physiology

       Evolutionary and Genomic Microbiology

       Geomicrobiology

       Mycology

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Public Health Microbiology:

Quantification of Human Polyomaviruses JC Virus and BK Virus by TaqMan Quantitative PCR and Comparison to Other Water Quality Indicators in Water and Fecal Samples
Shannon M. McQuaig, Troy M. Scott, Jerzy O. Lukasik, John H. Paul, and Valerie J. Harwood
Appl. Environ. Microbiol. June 2009 75: 3379-3388; published ahead of print April 3, 2009, doi:10.1128/AEM.02302-08
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Detection of Toxoplasma gondii Oocysts in Water Sample Concentrates by Real-Time PCR
Wenli Yang, H. D. Alan Lindquist, Vitaliano Cama, Frank W. Schaefer, III, Eric Villegas, Ronald Fayer, Earl J. Lewis, Yaoyu Feng, and Lihua Xiao
Appl. Environ. Microbiol. June 2009 75: 3477-3483; published ahead of print April 10, 2009, doi:10.1128/AEM.00285-09
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Phenotypic Diversity of Infectious Red Sea Bream Iridovirus Isolates from Cultured Fish in Japan
Hajime Shinmoto, Ken Taniguchi, Takuya Ikawa, Kenji Kawai, and Syun-ichirou Oshima
Appl. Environ. Microbiol. June 2009 75: 3535-3541; published ahead of print April 3, 2009, doi:10.1128/AEM.02255-08
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Recovery and Detection of Escherichia coli O157:H7 in Surface Water, Using Ultrafiltration and Real-Time PCR
Bonnie Mull and Vincent R. Hill
Appl. Environ. Microbiol. June 2009 75: 3593-3597; published ahead of print April 10, 2009, doi:10.1128/AEM.02750-08
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Role of Ceftiofur in Selection and Dissemination of bla_CMY-2-Mediated Cephalosporin Resistance in Salmonella enterica and Commensal Escherichia coli Isolates from Cattle
Joshua B. Daniels, Douglas R. Call, Dale Hancock, William M. Sischo, Katherine Baker, and Thomas E. Besser
Appl. Environ. Microbiol. June 2009 75: 3648-3655; published ahead of print April 17, 2009, doi:10.1128/AEM.02435-08
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Maternally and Naturally Acquired Antibodies to Shiga Toxins in a Cohort of Calves Shedding Shiga-Toxigenic Escherichia coli
Julia Fröhlich, Georg Baljer, and Christian Menge
Appl. Environ. Microbiol. June 2009 75: 3695-3704; published ahead of print April 10, 2009, doi:10.1128/AEM.02869-08
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Diversity and Morphology of Members of the Phylum "Synergistetes" in Periodontal Health and Disease
S. R. Vartoukian, R. M. Palmer, and W. G. Wade
Appl. Environ. Microbiol. June 2009 75: 3777-3786; published ahead of print April 3, 2009, doi:10.1128/AEM.02763-08
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Environmental Microbiology:

Generation of Electricity and Analysis of Microbial Communities in Wheat Straw Biomass-Powered Microbial Fuel Cells
Yifeng Zhang, Booki Min, Liping Huang, and Irini Angelidaki
Appl. Environ. Microbiol. June 2009 75: 3389-3395; published ahead of print April 17, 2009, doi:10.1128/AEM.02240-08
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Bacterial Communities from Shoreline Environments (Costa da Morte, Northwestern Spain) Affected by the Prestige Oil Spill
Jorge Alonso-Gutiérrez, Antonio Figueras, Joan Albaigés, Núria Jiménez, Marc Viñas, Anna M. Solanas, and Beatriz Novoa
Appl. Environ. Microbiol. June 2009 75: 3407-3418; published ahead of print April 17, 2009, doi:10.1128/AEM.01776-08
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Cultivation of Anaerobic and Facultatively Anaerobic Bacteria from Spacecraft-Associated Clean Rooms
Michaela Stieglmeier, Reinhard Wirth, Gerhard Kminek, and Christine Moissl-Eichinger
Appl. Environ. Microbiol. June 2009 75: 3484-3491; published ahead of print April 10, 2009, doi:10.1128/AEM.02565-08
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Differential Utilization of Carbon Substrates by Bacteria and Fungi in Tundra Soil
Riikka Rinnan and Erland Bååth
Appl. Environ. Microbiol. June 2009 75: 3611-3620; published ahead of print April 10, 2009, doi:10.1128/AEM.02865-08
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Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum
Katharina F. Ettwig, Theo van Alen, Katinka T. van de Pas-Schoonen, Mike S. M. Jetten, and Marc Strous
Appl. Environ. Microbiol. June 2009 75: 3656-3662; published ahead of print March 27, 2009, doi:10.1128/AEM.00067-09
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Diversity and Distribution of Anaeromyxobacter Strains in a Uranium-Contaminated Subsurface Environment with a Nonuniform Groundwater Flow
Sara H. Thomas, Elizabeth Padilla-Crespo, Phillip M. Jardine, Robert A. Sanford, and Frank E. Löffler
Appl. Environ. Microbiol. June 2009 75: 3679-3687; published ahead of print April 3, 2009, doi:10.1128/AEM.02473-08
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Distribution and Rate of Microbial Processes in an Ammonia-Loaded Air Filter Biofilm
Susanne Juhler, Niels Peter Revsbech, Andreas Schramm, Martina Herrmann, Lars D. M. Ottosen, and Lars Peter Nielsen
Appl. Environ. Microbiol. June 2009 75: 3705-3713; published ahead of print April 10, 2009, doi:10.1128/AEM.02612-08
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Plant Microbiology:

Endophytic Colonization of Potato (Solanum tuberosum L.) by a Novel Competent Bacterial Endophyte, Pseudomonas putida Strain P9, and Its Effect on Associated Bacterial Communities
Fernando Dini Andreote, Welington L. de Araújo, João L. de Azevedo, Jan Dirk van Elsas, Ulisses Nunes da Rocha, and Leonard S. van Overbeek
Appl. Environ. Microbiol. June 2009 75: 3396-3406; published ahead of print March 27, 2009, doi:10.1128/AEM.00491-09
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Genetics and Molecular Biology:

Identification and Functional Analysis of the Gene Cluster for L-Arabinose Utilization in Corynebacterium glutamicum
Hideo Kawaguchi, Miho Sasaki, Alain A. Vertès, Masayuki Inui, and Hideaki Yukawa
Appl. Environ. Microbiol. June 2009 75: 3419-3429; published ahead of print April 3, 2009, doi:10.1128/AEM.02912-08
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Regulation of Expression of Genes Involved in Quinate and Shikimate Utilization in Corynebacterium glutamicum
Haruhiko Teramoto, Masayuki Inui, and Hideaki Yukawa
Appl. Environ. Microbiol. June 2009 75: 3461-3468; published ahead of print April 17, 2009, doi:10.1128/AEM.00163-09
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Identification of a Gene Cluster for the Biosynthesis of a Long, Galactose-Rich Exopolysaccharide in Lactobacillus rhamnosus GG and Functional Analysis of the Priming Glycosyltransferase
Sarah Lebeer, Tine L. A. Verhoeven, Grégory Francius, Geert Schoofs, Ivo Lambrichts, Yves Dufrêne, Jos Vanderleyden, and Sigrid C. J. De Keersmaecker
Appl. Environ. Microbiol. June 2009 75: 3554-3563; published ahead of print April 3, 2009, doi:10.1128/AEM.02919-08
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Hypoxic Adaptation by Efg1 Regulates Biofilm Formation by Candida albicans
Catrin Stichternoth and Joachim F. Ernst
Appl. Environ. Microbiol. June 2009 75: 3663-3672; published ahead of print April 3, 2009, doi:10.1128/AEM.00098-09
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Proteomic and Transcriptomic Analyses Reveal Genes Upregulated by cis-Dichloroethene in Polaromonas sp. Strain JS666
Laura K. Jennings, Michelle M. G. Chartrand, Georges Lacrampe-Couloume, Barbara Sherwood Lollar, Jim C. Spain, and James M. Gossett
Appl. Environ. Microbiol. June 2009 75: 3733-3744; published ahead of print April 10, 2009, doi:10.1128/AEM.00031-09
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First Gene Cassettes of Integrons as Targets in Finding Adaptive Genes in Metagenomes
Lionel Huang, Christine Cagnon, Pierre Caumette, and Robert Duran
Appl. Environ. Microbiol. June 2009 75: 3823-3825; published ahead of print April 10, 2009, doi:10.1128/AEM.02394-08
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Invertebrate Microbiology:

Gut-Associated Denitrification and In Vivo Emission of Nitrous Oxide by the Earthworm Families Megascolecidae and Lumbricidae in New Zealand
Pia K. Wüst, Marcus A. Horn, Gemma Henderson, Peter H. Janssen, Bernd H. A. Rehm, and Harold L. Drake
Appl. Environ. Microbiol. June 2009 75: 3430-3436; published ahead of print April 3, 2009, doi:10.1128/AEM.00304-09
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Coral-Associated Bacteria and Their Role in the Biogeochemical Cycling of Sulfur
Jean-Baptiste Raina, Dianne Tapiolas, Bette L. Willis, and David G. Bourne
Appl. Environ. Microbiol. June 2009 75: 3492-3501; published ahead of print April 3, 2009, doi:10.1128/AEM.02567-08
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Inter- and Intraspecific Variations of Bacterial Communities Associated with Marine Sponges from San Juan Island, Washington
On On Lee, Yue Him Wong, and Pei-Yuan Qian
Appl. Environ. Microbiol. June 2009 75: 3513-3521; published ahead of print April 10, 2009, doi:10.1128/AEM.00002-09
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Composition of Bacterial Communities Associated with Natural and Laboratory Populations of Asobara tabida Infected with Wolbachia
Karima Zouache, Denis Voronin, Van Tran-Van, and Patrick Mavingui
Appl. Environ. Microbiol. June 2009 75: 3755-3764; published ahead of print April 17, 2009, doi:10.1128/AEM.02964-08
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Intestinal Endocellular Symbiotic Bacterium of the Macaque Louse Pedicinus obtusus: Distinct Endosymbiont Origins in Anthropoid Primate Lice and the Old World Monkey Louse
Takema Fukatsu, Takahiro Hosokawa, Ryuichi Koga, Naruo Nikoh, Takuya Kato, Shin-ichi Hayama, Haruo Takefushi, and Ichirou Tanaka
Appl. Environ. Microbiol. June 2009 75: 3796-3799; published ahead of print March 20, 2009, doi:10.1128/AEM.00226-09
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Biotechnology:

Metabolic Engineering of Saccharomyces cerevisiae for Production of Novel Cyanophycins with an Extended Range of Constituent Amino Acids
Anna Steinle, Klaus Bergander, and Alexander Steinbüchel
Appl. Environ. Microbiol. June 2009 75: 3437-3446; published ahead of print April 3, 2009, doi:10.1128/AEM.00383-09
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Phosphate-Responsive Promoter of a Pichia pastoris Sodium Phosphate Symporter
Jungoh Ahn, Jiyeon Hong, Myongsoo Park, Hyeokweon Lee, Eungyo Lee, Chunsuk Kim, Joohwan Lee, Eui-sung Choi, Joon-ki Jung, and Hongweon Lee
Appl. Environ. Microbiol. June 2009 75: 3528-3534; published ahead of print March 27, 2009, doi:10.1128/AEM.02913-08
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Organoselenium Coating on Cellulose Inhibits the Formation of Biofilms by Pseudomonas aeruginosa and Staphylococcus aureus
Phat L. Tran, Adrienne A. Hammond, Thomas Mosley, Janette Cortez, Tracy Gray, Jane A. Colmer-Hamood, Mayank Shashtri, Julian E. Spallholz, Abdul N. Hamood, and Ted W. Reid
Appl. Environ. Microbiol. June 2009 75: 3586-3592; published ahead of print April 3, 2009, doi:10.1128/AEM.02683-08
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Simultaneous Cellulose Degradation and Electricity Production by Enterobacter cloacae in a Microbial Fuel Cell
Farzaneh Rezaei, Defeng Xing, Rachel Wagner, John M. Regan, Tom L. Richard, and Bruce E. Logan
Appl. Environ. Microbiol. June 2009 75: 3673-3678; published ahead of print April 3, 2009, doi:10.1128/AEM.02600-08
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Comparative Proteomic Analysis of Tolerance and Adaptation of Ethanologenic Saccharomyces cerevisiae to Furfural, a Lignocellulosic Inhibitory Compound
Feng-Ming Lin, Bin Qiao, and Ying-Jin Yuan
Appl. Environ. Microbiol. June 2009 75: 3765-3776; published ahead of print April 10, 2009, doi:10.1128/AEM.02594-08
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Efficient Bioethanol Production by a Recombinant Flocculent Saccharomyces cerevisiae Strain with a Genome-Integrated NADP⁺-Dependent Xylitol Dehydrogenase Gene
Akinori Matsushika, Hiroyuki Inoue, Seiya Watanabe, Tsutomu Kodaki, Keisuke Makino, and Shigeki Sawayama
Appl. Environ. Microbiol. June 2009 75: 3818-3822; published ahead of print March 27, 2009, doi:10.1128/AEM.02636-08
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Food Microbiology:

Characterization of Rhamnosidases from Lactobacillus plantarum and Lactobacillus acidophilus
Jules Beekwilder, Daniela Marcozzi, Samuele Vecchi, Ric de Vos, Patrick Janssen, Christof Francke, Johan van Hylckama Vlieg, and Robert D. Hall
Appl. Environ. Microbiol. June 2009 75: 3447-3454; published ahead of print April 3, 2009, doi:10.1128/AEM.02675-08
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Enumeration of Escherichia coli Cells on Chicken Carcasses as a Potential Measure of Microbial Process Control in a Random Selection of Slaughter Establishments in the United States
Sean F. Altekruse, Mark E. Berrang, Harry Marks, Bharat Patel, William K. Shaw, Jr., Parmesh Saini, Patricia A. Bennett, and J. Stan Bailey
Appl. Environ. Microbiol. June 2009 75: 3522-3527; published ahead of print April 10, 2009, doi:10.1128/AEM.02685-08
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Gene Expression Induced in Escherichia coli O157:H7 upon Exposure to Model Apple Juice
Teresa M. Bergholz, Sivapriya Kailasan Vanaja, and Thomas S. Whittam
Appl. Environ. Microbiol. June 2009 75: 3542-3553; published ahead of print April 3, 2009, doi:10.1128/AEM.02841-08
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Campylobacter Colonization of the Turkey Intestine in the Context of Microbial Community Development
Alexandra J. Scupham
Appl. Environ. Microbiol. June 2009 75: 3564-3571; published ahead of print April 3, 2009, doi:10.1128/AEM.01409-08
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Escherichia coli and Salmonella enterica Are Protected against Acetic Acid, but Not Hydrochloric Acid, by Hypertonicity
B. Chapman and T. Ross
Appl. Environ. Microbiol. June 2009 75: 3605-3610; published ahead of print April 3, 2009, doi:10.1128/AEM.02462-08
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Differential Listeria monocytogenes Strain Survival and Growth in Katiki, a Traditional Greek Soft Cheese, at Different Storage Temperatures
Dafni-Maria Kagkli, Vassilios Iliopoulos, Virginia Stergiou, Anna Lazaridou, and George-John Nychas
Appl. Environ. Microbiol. June 2009 75: 3621-3626; published ahead of print April 17, 2009, doi:10.1128/AEM.01571-08
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Genome-Scale Model of Streptococcus thermophilus LMG18311 for Metabolic Comparison of Lactic Acid Bacteria
Margreet I. Pastink, Bas Teusink, Pascal Hols, Sanne Visser, Willem M. de Vos, and Jeroen Hugenholtz
Appl. Environ. Microbiol. June 2009 75: 3627-3633; published ahead of print April 3, 2009, doi:10.1128/AEM.00138-09
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Detection of Live Salmonella sp. Cells in Produce by a TaqMan-Based Quantitative Reverse Transcriptase Real-Time PCR Targeting invA mRNA
Narjol González-Escalona, Thomas S. Hammack, Mindi Russell, Andrew P. Jacobson, Antonio J. De Jesús, Eric W. Brown, and Keith A. Lampel
Appl. Environ. Microbiol. June 2009 75: 3714-3720; published ahead of print April 17, 2009, doi:10.1128/AEM.02686-08
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Role of GerKB in Germination and Outgrowth of Clostridium perfringens Spores
Daniel Paredes-Sabja, Peter Setlow, and Mahfuzur R. Sarker
Appl. Environ. Microbiol. June 2009 75: 3813-3817; published ahead of print April 10, 2009, doi:10.1128/AEM.00048-09
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Microbial Ecology:

Biofilm Bacterial Community Structure in Streams Affected by Acid Mine Drainage
Gavin Lear, Dev Niyogi, Jon Harding, Yimin Dong, and Gillian Lewis
Appl. Environ. Microbiol. June 2009 75: 3455-3460; published ahead of print April 10, 2009, doi:10.1128/AEM.00274-09
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Identifying the Source of Unknown Microcystin Genes and Predicting Microcystin Variants by Comparing Genes within Uncultured Cyanobacterial Cells
Christopher J. Allender, Gary R. LeCleir, Johanna M. Rinta-Kanto, Randall L. Small, Michael F. Satchwell, Gregory L. Boyer, and Steven W. Wilhelm
Appl. Environ. Microbiol. June 2009 75: 3598-3604; published ahead of print April 10, 2009, doi:10.1128/AEM.02448-08
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Enzymology and Protein Engineering:

Application of a Newly Identified and Characterized 18-O-Acyltransferase in Chemoenzymatic Synthesis of Selected Natural and Nonnatural Bioactive Derivatives of Phoslactomycins
Mohini S. Ghatge, Nadaraj Palaniappan, Ma'moun M. Alhamadsheh, Jessica DiBari, and Kevin A. Reynolds
Appl. Environ. Microbiol. June 2009 75: 3469-3476; published ahead of print March 20, 2009, doi:10.1128/AEM.02590-08
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Characterization of a Unique Class C Acid Phosphatase from Clostridium perfringens
Thomas J. Reilly, Deborah L. Chance, Michael J. Calcutt, John J. Tanner, Richard L. Felts, Stephen C. Waller, Michael T. Henzl, Thomas P. Mawhinney, Irene K. Ganjam, and William H. Fales
Appl. Environ. Microbiol. June 2009 75: 3745-3754; published ahead of print April 10, 2009, doi:10.1128/AEM.01599-08
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Methods:

Viability PCR, a Culture-Independent Method for Rapid and Selective Quantification of Viable Legionella pneumophila Cells in Environmental Water Samples
Pilar Delgado-Viscogliosi, Lydie Solignac, and Jean-Marie Delattre
Appl. Environ. Microbiol. June 2009 75: 3502-3512; published ahead of print April 10, 2009, doi:10.1128/AEM.02878-08
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High-Throughput Quantitative Analysis of the Human Intestinal Microbiota with a Phylogenetic Microarray
Oleg Paliy, Harshavardhan Kenche, Frank Abernathy, and Sonia Michail
Appl. Environ. Microbiol. June 2009 75: 3572-3579; published ahead of print April 10, 2009, doi:10.1128/AEM.02764-08
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Quantitative Method To Determine Sporicidal Decontamination of Building Surfaces by Gaseous Fumigants, and Issues Related to Laboratory-Scale Studies
Vipin K. Rastogi, Lalena Wallace, Lisa S. Smith, Shawn P. Ryan, and Blair Martin
Appl. Environ. Microbiol. June 2009 75: 3688-3694; published ahead of print April 3, 2009, doi:10.1128/AEM.02592-08
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Production of Recombinant Proteins in the lon-Deficient BL21(DE3) Strain of Escherichia coli in the Absence of the DnaK Chaperone
Julien Ratelade, Marie-Caroline Miot, Emmett Johnson, Jean-Michel Betton, Philippe Mazodier, and Nadia Benaroudj
Appl. Environ. Microbiol. June 2009 75: 3803-3807; published ahead of print April 3, 2009, doi:10.1128/AEM.00255-09
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Hollow-Fiber Membrane Chamber as a Device for In Situ Environmental Cultivation
Yoshiteru Aoi, Tomoyuki Kinoshita, Toru Hata, Hiroaki Ohta, Haruko Obokata, and Satoshi Tsuneda
Appl. Environ. Microbiol. June 2009 75: 3826-3833; published ahead of print March 27, 2009, doi:10.1128/AEM.02542-08
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Physiology:

Lactobacillus plantarum WCFS1 Electron Transport Chains
R. J. W. Brooijmans, W. M. de Vos, and J. Hugenholtz
Appl. Environ. Microbiol. June 2009 75: 3580-3585; published ahead of print April 3, 2009, doi:10.1128/AEM.00147-09
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Translocation of a Thioether-Bridged Azurin Peptide Fragment via the Sec Pathway in Lactococcus lactis
Anneke Kuipers, Rick Rink, and Gert N. Moll
Appl. Environ. Microbiol. June 2009 75: 3800-3802; published ahead of print March 27, 2009, doi:10.1128/AEM.00341-09
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Evolutionary and Genomic Microbiology:

Phylogenetic Analysis Indicates Evolutionary Diversity and Environmental Segregation of Marine Podovirus DNA Polymerase Gene Sequences
Jessica M. Labonté, Karen E. Reid, and Curtis A. Suttle
Appl. Environ. Microbiol. June 2009 75: 3634-3640; published ahead of print April 10, 2009, doi:10.1128/AEM.02317-08
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Molecular Diversification in the Quorum-Sensing System of Vibrio cholerae: Role of Natural Selection in the Emergence of Pandemic Strains
Nina M. Talyzina, Pär K. Ingvarsson, Jun Zhu, Sun N. Wai, and Agneta Andersson
Appl. Environ. Microbiol. June 2009 75: 3808-3812; published ahead of print April 3, 2009, doi:10.1128/AEM.02496-08
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Geomicrobiology:

Plutonium(V/VI) Reduction by the Metal-Reducing Bacteria Geobacter metallireducens GS-15 and Shewanella oneidensis MR-1
Gary A. Icopini, Joe G. Lack, Larry E. Hersman, Mary P. Neu, and Hakim Boukhalfa
Appl. Environ. Microbiol. June 2009 75: 3641-3647; published ahead of print April 10, 2009, doi:10.1128/AEM.00022-09
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Mycology:

Insect-Specific Polyketide Synthases (PKSs), Potential PKS-Nonribosomal Peptide Synthetase Hybrids, and Novel PKS Clades in Tropical Fungi
Alongkorn Amnuaykanjanasin, Suranat Phonghanpot, Nattapong Sengpanich, Supapon Cheevadhanarak, and Morakot Tanticharoen
Appl. Environ. Microbiol. June 2009 75: 3721-3732; published ahead of print April 3, 2009, doi:10.1128/AEM.02744-08
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Mitogen-Activated Protein Kinase hog1 in the Entomopathogenic Fungus Beauveria bassiana Regulates Environmental Stress Responses and Virulence to Insects
Yongjun Zhang, Jianhua Zhao, Weiguo Fang, Jianqing Zhang, Zhibing Luo, Mi Zhang, Yanhua Fan, and Yan Pei
Appl. Environ. Microbiol. June 2009 75: 3787-3795; published ahead of print April 10, 2009, doi:10.1128/AEM.01913-08
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.