AEM -- Table of Contents (June 15 2009, 75 [12])

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Contents: June 2009, Volume 75, Issue 12

       Physiology

       Invertebrate Microbiology

       Microbial Ecology

       Plant Microbiology

       Food Microbiology

       Environmental Microbiology

       Methods

       Genetics and Molecular Biology

       Public Health Microbiology

       Mycology

       Enzymology and Protein Engineering

       Geomicrobiology

       Biotechnology

       Author's Correction

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To see an article, click its [Full Text], [Abstract] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

Physiology:

Characterization of Bacterial Magnetotactic Behaviors by Using a Magnetospectrophotometry Assay
Christopher T. Lefèvre, Tao Song, Jean-Paul Yonnet, and Long-Fei Wu
Appl. Environ. Microbiol. June 2009 75: 3835-3841; published ahead of print April 17, 2009, doi:10.1128/AEM.00165-09
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Requirement of Polyphosphate by Pseudomonas fluorescens Pf0-1 for Competitive Fitness and Heat Tolerance in Laboratory Media and Sterile Soil
Mark W. Silby, Julie S. Nicoll, and Stuart B. Levy
Appl. Environ. Microbiol. June 2009 75: 3872-3881; published ahead of print April 24, 2009, doi:10.1128/AEM.00017-09
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Effect of pH and Temperature on Denitrification Gene Expression and Activity in Pseudomonas mandelii
Saleema Saleh-Lakha, Kelly E. Shannon, Sherri L. Henderson, Claudia Goyer, Jack T. Trevors, Bernie J. Zebarth, and David L. Burton
Appl. Environ. Microbiol. June 2009 75: 3903-3911; published ahead of print April 17, 2009, doi:10.1128/AEM.00080-09
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Phenol Degradation in the Strictly Anaerobic Iron-Reducing Bacterium Geobacter metallireducens GS-15
Kathleen M. Schleinitz, Sirko Schmeling, Nico Jehmlich, Martin von Bergen, Hauke Harms, Sabine Kleinsteuber, Carsten Vogt, and Georg Fuchs
Appl. Environ. Microbiol. June 2009 75: 3912-3919; published ahead of print April 17, 2009, doi:10.1128/AEM.01525-08
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Effect of Amino Acid Availability on Vitamin B₁₂ Production in Lactobacillus reuteri
Filipe Santos, Bas Teusink, Douwe Molenaar, Maurice van Heck, Michiel Wels, Sander Sieuwerts, Willem M. de Vos, and Jeroen Hugenholtz
Appl. Environ. Microbiol. June 2009 75: 3930-3936; published ahead of print April 17, 2009, doi:10.1128/AEM.02487-08
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Rhizobium sp. Strain NGR234 Possesses a Remarkable Number of Secretion Systems
Christel Schmeisser, Heiko Liesegang, Dagmar Krysciak, Nadia Bakkou, Antoine Le Quéré, Antje Wollherr, Isabelle Heinemeyer, Burkhard Morgenstern, Andreas Pommerening-Röser, Margarita Flores, Rafael Palacios, Sydney Brenner, Gerhard Gottschalk, Ruth A. Schmitz, William J. Broughton, Xavier Perret, Axel W. Strittmatter, and Wolfgang R. Streit
Appl. Environ. Microbiol. June 2009 75: 4035-4045; published ahead of print April 17, 2009, doi:10.1128/AEM.00515-09
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Increased Antibiotic Resistance of Escherichia coli in Mature Biofilms
Akinobu Ito, Asami Taniuchi, Thithiwat May, Koji Kawata, and Satoshi Okabe
Appl. Environ. Microbiol. June 2009 75: 4093-4100; published ahead of print April 17, 2009, doi:10.1128/AEM.02949-08
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Phenotypic and Transcriptomic Analyses of Mildly and Severely Salt-Stressed Bacillus cereus ATCC 14579 Cells
Heidy M. W. den Besten, Maarten Mols, Roy Moezelaar, Marcel H. Zwietering, and Tjakko Abee
Appl. Environ. Microbiol. June 2009 75: 4111-4119; published ahead of print April 24, 2009, doi:10.1128/AEM.02891-08
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Regulation of the Display Ratio of Enzymes on the Saccharomyces cerevisiae Cell Surface by the Immunoglobulin G and Cellulosomal Enzyme Binding Domains
Junji Ito, Akihiko Kosugi, Tsutomu Tanaka, Kouichi Kuroda, Seiji Shibasaki, Chiaki Ogino, Mitsuyoshi Ueda, Hideki Fukuda, Roy H. Doi, and Akihiko Kondo
Appl. Environ. Microbiol. June 2009 75: 4149-4154; published ahead of print May 1, 2009, doi:10.1128/AEM.00318-09
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The Haloprotease CPI Produced by the Moderately Halophilic Bacterium Pseudoalteromonas ruthenica Is Secreted by the Type II Secretion Pathway
Cristina Sánchez-Porro, Encarnación Mellado, Anthony P. Pugsley, Olivera Francetic, and Antonio Ventosa
Appl. Environ. Microbiol. June 2009 75: 4197-4201; published ahead of print April 17, 2009, doi:10.1128/AEM.00156-09
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Invertebrate Microbiology:

Mutations in Domain I Interhelical Loops Affect the Rate of Pore Formation by the Bacillus thuringiensis Cry1Aa Toxin in Insect Midgut Brush Border Membrane Vesicles
Geneviève Lebel, Vincent Vachon, Gabrielle Préfontaine, Frédéric Girard, Luke Masson, Marc Juteau, Aliou Bah, Geneviève Larouche, Charles Vincent, Raynald Laprade, and Jean-Louis Schwartz
Appl. Environ. Microbiol. June 2009 75: 3842-3850; published ahead of print April 17, 2009, doi:10.1128/AEM.02924-08
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Species-Specific Cell Wall Binding Affinity of the S-Layer Proteins of Mosquitocidal Bacterium Bacillus sphaericus C3-41
Jia Li, Xiaomin Hu, Jianpin Yan, and Zhiming Yuan
Appl. Environ. Microbiol. June 2009 75: 3891-3895; published ahead of print April 24, 2009, doi:10.1128/AEM.00356-09
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Susceptibility of Diabrotica virgifera virgifera (Coleoptera: Chrysomelidae) to the Entomopathogenic Fungus Metarhizium anisopliae when Feeding on Bacillus thuringiensis Cry3Bb1-Expressing Maize
Michael Meissle, Christina Pilz, and Jörg Romeis
Appl. Environ. Microbiol. June 2009 75: 3937-3943; published ahead of print April 17, 2009, doi:10.1128/AEM.00432-09
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CpxRA Contributes to Xenorhabdus nematophila Virulence through Regulation of lrhA and Modulation of Insect Immunity
Erin E. Herbert Tran and Heidi Goodrich-Blair
Appl. Environ. Microbiol. June 2009 75: 3998-4006; published ahead of print April 17, 2009, doi:10.1128/AEM.02657-08
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CpxRA Influences Xenorhabdus nematophila Colonization Initiation and Outgrowth in Steinernema carpocapsae Nematodes through Regulation of the nil Locus
Erin E. Herbert Tran, Aaron W. Andersen, and Heidi Goodrich-Blair
Appl. Environ. Microbiol. June 2009 75: 4007-4014; published ahead of print April 17, 2009, doi:10.1128/AEM.02658-08
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Microbial Ecology:

Utilization of Mucus from the Coral Acropora palmata by the Pathogen Serratia marcescens and by Environmental and Coral Commensal Bacteria
Cory J. Krediet, Kim B. Ritchie, Matthew Cohen, Erin K. Lipp, Kathryn Patterson Sutherland, and Max Teplitski
Appl. Environ. Microbiol. June 2009 75: 3851-3858; published ahead of print April 24, 2009, doi:10.1128/AEM.00457-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Coaggregation by the Freshwater Bacterium Sphingomonas natatoria Alters Dual-Species Biofilm Formation
K. R. Min and A. H. Rickard
Appl. Environ. Microbiol. June 2009 75: 3987-3997; published ahead of print April 17, 2009, doi:10.1128/AEM.02843-08
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Geographic and Phylogenetic Variation in Bacterial Biovolume as Revealed by Protein and Nucleic Acid Staining
Tiffany R. A. Straza, Matthew T. Cottrell, Hugh W. Ducklow, and David L. Kirchman
Appl. Environ. Microbiol. June 2009 75: 4028-4034; published ahead of print April 17, 2009, doi:10.1128/AEM.00183-09
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Assessment of the Diversity, Abundance, and Ecological Distribution of Members of Candidate Division SR1 Reveals a High Level of Phylogenetic Diversity but Limited Morphotypic Diversity
James P. Davis, Noha H. Youssef, and Mostafa S. Elshahed
Appl. Environ. Microbiol. June 2009 75: 4139-4148; published ahead of print April 24, 2009, doi:10.1128/AEM.00137-09
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Diet-Induced Metabolic Improvements in a Hamster Model of Hypercholesterolemia Are Strongly Linked to Alterations of the Gut Microbiota
Inés Martínez, Grant Wallace, Chaomei Zhang, Ryan Legge, Andrew K. Benson, Timothy P. Carr, Etsuko N. Moriyama, and Jens Walter
Appl. Environ. Microbiol. June 2009 75: 4175-4184; published ahead of print May 1, 2009, doi:10.1128/AEM.00380-09
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Archaeal Diversity and the Prevalence of Crenarchaeota in Salt Marsh Sediments
Katelyn A. Nelson, Nicole S. Moin, and Anne E. Bernhard
Appl. Environ. Microbiol. June 2009 75: 4211-4215; published ahead of print April 24, 2009, doi:10.1128/AEM.00201-09
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Diversity and Abundance of Ammonia-Oxidizing Archaea in Hydrothermal Vent Chimneys of the Juan de Fuca Ridge
Shufang Wang, Xiang Xiao, Lijing Jiang, Xiaotong Peng, Huaiyang Zhou, Jun Meng, and Fengping Wang
Appl. Environ. Microbiol. June 2009 75: 4216-4220; published ahead of print April 24, 2009, doi:10.1128/AEM.01761-08
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Plant Microbiology:

Rhizosphere Communities of Genetically Modified Zeaxanthin-Accumulating Potato Plants and Their Parent Cultivar Differ Less than Those of Different Potato Cultivars
Nicole Weinert, Remo Meincke, Christine Gottwald, Holger Heuer, Newton C. M. Gomes, Michael Schloter, Gabriele Berg, and Kornelia Smalla
Appl. Environ. Microbiol. June 2009 75: 3859-3865; published ahead of print April 17, 2009, doi:10.1128/AEM.00414-09
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Role of Gluconic Acid Production in the Regulation of Biocontrol Traits of Pseudomonas fluorescens CHA0
Patrice de Werra, Maria Péchy-Tarr, Christoph Keel, and Monika Maurhofer
Appl. Environ. Microbiol. June 2009 75: 4162-4174; published ahead of print April 17, 2009, doi:10.1128/AEM.00295-09
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Food Microbiology:

Characterization of the Tn916 Conjugative Transposon in a Food-Borne Strain of Lactobacillus paracasei
Chiara Devirgiliis, Doriana Coppola, Simona Barile, Bianca Colonna, and Giuditta Perozzi
Appl. Environ. Microbiol. June 2009 75: 3866-3871; published ahead of print April 24, 2009, doi:10.1128/AEM.00589-09
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Effect of Octenidine Hydrochloride on Planktonic Cells and Biofilms of Listeria monocytogenes
Mary Anne Roshni Amalaradjou, Carol E. Norris, and Kumar Venkitanarayanan
Appl. Environ. Microbiol. June 2009 75: 4089-4092; published ahead of print April 17, 2009, doi:10.1128/AEM.02807-08
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In Silico Prediction of Horizontal Gene Transfer Events in Lactobacillus bulgaricus and Streptococcus thermophilus Reveals Protocooperation in Yogurt Manufacturing
Mengjin Liu, Roland J. Siezen, and Arjen Nauta
Appl. Environ. Microbiol. June 2009 75: 4120-4129; published ahead of print April 24, 2009, doi:10.1128/AEM.02898-08
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Inactivation of Enteric Viruses in Minimally Processed Berries and Herbs
S. Butot, T. Putallaz, R. Amoroso, and G. Sánchez
Appl. Environ. Microbiol. June 2009 75: 4155-4161; published ahead of print April 24, 2009, doi:10.1128/AEM.00182-09
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Characterization of Tetracycline-Resistant Streptococcus thermophilus Isolates from Italian Soft Cheeses
Lucia Rizzotti, Federica La Gioia, Franco Dellaglio, and Sandra Torriani
Appl. Environ. Microbiol. June 2009 75: 4224-4229; published ahead of print April 24, 2009, doi:10.1128/AEM.01380-08
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Environmental Microbiology:

Attenuation of Edwardsiella tarda Virulence by Small Peptides That Interfere with LuxS/Autoinducer Type 2 Quorum Sensing
Min Zhang, Xu-dong Jiao, Yong-hua Hu, and Li Sun
Appl. Environ. Microbiol. June 2009 75: 3882-3890; published ahead of print May 1, 2009, doi:10.1128/AEM.02690-08
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Induction of Extracellular Hydroxyl Radical Production by White-Rot Fungi through Quinone Redox Cycling
Víctor Gómez-Toribio, Ana B. García-Martín, María J. Martínez, Ángel T. Martínez, and Francisco Guillén
Appl. Environ. Microbiol. June 2009 75: 3944-3953; published ahead of print April 17, 2009, doi:10.1128/AEM.02137-08
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Enhancing the Production of Hydroxyl Radicals by Pleurotus eryngii via Quinone Redox Cycling for Pollutant Removal
Víctor Gómez-Toribio, Ana B. García-Martín, María J. Martínez, Ángel T. Martínez, and Francisco Guillén
Appl. Environ. Microbiol. June 2009 75: 3954-3962; published ahead of print April 17, 2009, doi:10.1128/AEM.02138-08
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Uncultivated Magnetotactic Cocci from Yuandadu Park in Beijing, China
Wei Lin and Yongxin Pan
Appl. Environ. Microbiol. June 2009 75: 4046-4052; published ahead of print April 17, 2009, doi:10.1128/AEM.00247-09
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Methods:

Optimization of a Phage Amplification Assay To Permit Accurate Enumeration of Viable Mycobacterium avium subsp. paratuberculosis Cells
Antonio Foddai, Christopher T. Elliott, and Irene R. Grant
Appl. Environ. Microbiol. June 2009 75: 3896-3902; published ahead of print April 24, 2009, doi:10.1128/AEM.00294-09
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Direct Expression of Antimicrobial Peptides in an Intact Form by a Translationally Coupled Two-Cistron Expression System
Su A Jang, Bong Hyun Sung, Ju Hyun Cho, and Sun Chang Kim
Appl. Environ. Microbiol. June 2009 75: 3980-3986; published ahead of print April 10, 2009, doi:10.1128/AEM.02753-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Robust Detection and Identification of Multiple Oomycetes and Fungi in Environmental Samples by Using a Novel Cleavable Padlock Probe-Based Ligation Detection Assay
R. van Doorn, M. Slawiak, M. Szemes, A. M. Dullemans, P. Bonants, G. A. Kowalchuk, and C. D. Schoen
Appl. Environ. Microbiol. June 2009 75: 4185-4193; published ahead of print April 24, 2009, doi:10.1128/AEM.00071-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Genetics and Molecular Biology:

Carbazole-Degradative IncP-7 Plasmid pCAR1.2 Is Structurally Unstable in Pseudomonas fluorescens Pf0-1, Which Accumulates Catechol, the Intermediate of the Carbazole Degradation Pathway
Yurika Takahashi, Masaki Shintani, Li Li, Hisakazu Yamane, and Hideaki Nojiri
Appl. Environ. Microbiol. June 2009 75: 3920-3929; published ahead of print April 17, 2009, doi:10.1128/AEM.02373-08
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Toward Cloning of the Magnetotactic Metagenome: Identification of Magnetosome Island Gene Clusters in Uncultivated Magnetotactic Bacteria from Different Aquatic Sediments
Christian Jogler, Wei Lin, Anke Meyerdierks, Michael Kube, Emanuel Katzmann, Christine Flies, Yongxin Pan, Rudolf Amann, Richard Reinhardt, and Dirk Schüler
Appl. Environ. Microbiol. June 2009 75: 3972-3979; published ahead of print April 24, 2009, doi:10.1128/AEM.02701-08
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Engineering of Tellurite-Resistant Genetic Tools for Single-Copy Chromosomal Analysis of Burkholderia spp. and Characterization of the Burkholderia thailandensis betBA Operon
Yun Kang, Michael H. Norris, Ashley R. Barrett, Bruce A. Wilcox, and Tung T. Hoang
Appl. Environ. Microbiol. June 2009 75: 4015-4027; published ahead of print April 17, 2009, doi:10.1128/AEM.02733-08
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Identification and Characterization of a Novel Gene Involved in the trans-Specific Nematicidal Activity of Photorhabdus luminescens LN2
Xuehong Qiu, Richou Han, Xun Yan, Mingxing Liu, Li Cao, Toyoshi Yoshiga, and Eizo Kondo
Appl. Environ. Microbiol. June 2009 75: 4221-4223; published ahead of print April 17, 2009, doi:10.1128/AEM.02967-08
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Public Health Microbiology:

Different Fecal Microbiotas and Volatile Organic Compounds in Treated and Untreated Children with Celiac Disease
Raffaella Di Cagno, Carlo G. Rizzello, Francesca Gagliardi, Patrizia Ricciuti, Maurice Ndagijimana, Ruggiero Francavilla, M. Elisabetta Guerzoni, Carmine Crecchio, Marco Gobbetti, and Maria De Angelis
Appl. Environ. Microbiol. June 2009 75: 3963-3971; published ahead of print April 17, 2009, doi:10.1128/AEM.02793-08
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions]

Multiple-Locus Variable-Number Tandem-Repeat Analysis for Clonal Identification of Vibrio parahaemolyticus Isolates by Using Capillary Electrophoresis
Erika Harth-Chu, Romilio T. Espejo, Richard Christen, Carlos A. Guzmán, and Manfred G. Höfle
Appl. Environ. Microbiol. June 2009 75: 4079-4088; published ahead of print April 17, 2009, doi:10.1128/AEM.02729-08
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Mycology:

Possible Environmental Origin of Resistance of Aspergillus fumigatus to Medical Triazoles
Eveline Snelders, Robert A. G. Huis in 't Veld, Anthonius J. M. M. Rijs, Gert H. J. Kema, Willem J. G. Melchers, and Paul E. Verweij
Appl. Environ. Microbiol. June 2009 75: 4053-4057; published ahead of print April 17, 2009, doi:10.1128/AEM.00231-09
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Transcriptome and Secretome Analyses of Phanerochaete chrysosporium Reveal Complex Patterns of Gene Expression
Amber Vanden Wymelenberg, Jill Gaskell, Mike Mozuch, Phil Kersten, Grzegorz Sabat, Diego Martinez, and Dan Cullen
Appl. Environ. Microbiol. June 2009 75: 4058-4068; published ahead of print April 17, 2009, doi:10.1128/AEM.00314-09
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Spatial Patterns in Hyphal Growth and Substrate Exploitation within Norway Spruce Stems Colonized by the Pathogenic White-Rot Fungus Heterobasidion parviporum
Ari M. Hietala, Nina E. Nagy, Arne Steffenrem, Harald Kvaalen, Carl G. Fossdal, and Halvor Solheim
Appl. Environ. Microbiol. June 2009 75: 4069-4078; published ahead of print April 17, 2009, doi:10.1128/AEM.02392-08
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Ferricrocin, a Siderophore Involved in Intra- and Transcellular Iron Distribution in Aspergillus fumigatus
Anja Wallner, Michael Blatzer, Markus Schrettl, Bettina Sarg, Herbert Lindner, and Hubertus Haas
Appl. Environ. Microbiol. June 2009 75: 4194-4196; published ahead of print April 17, 2009, doi:10.1128/AEM.00479-09
[Abstract] [Full Text] [PDF] [Supplemental material] [Reprints and Permissions] OPEN ACCESS

Enzymology and Protein Engineering:

Widespread Abundance of Functional Bacterial Amyloid in Mycolata and Other Gram-Positive Bacteria
Peter Bruun Jordal, Morten Simonsen Dueholm, Poul Larsen, Steen Vang Petersen, Jan Johannes Enghild, Gunna Christiansen, Peter Højrup, Per Halkjær Nielsen, and Daniel Erik Otzen
Appl. Environ. Microbiol. June 2009 75: 4101-4110; published ahead of print April 24, 2009, doi:10.1128/AEM.02107-08
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Characterization of P450 FcpC, the Enzyme Responsible for Bioconversion of Diosgenone to Isonuatigenone in Streptomyces virginiae IBL-14
Wei Wang, Feng-Qing Wang, and Dong-Zhi Wei
Appl. Environ. Microbiol. June 2009 75: 4202-4205; published ahead of print April 17, 2009, doi:10.1128/AEM.02606-08
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Geomicrobiology:

Mn(II) Oxidation Is Catalyzed by Heme Peroxidases in "Aurantimonas manganoxydans" Strain SI85-9A1 and Erythrobacter sp. Strain SD-21
C. R. Anderson, H. A. Johnson, N. Caputo, R. E. Davis, J. W. Torpey, and B. M. Tebo
Appl. Environ. Microbiol. June 2009 75: 4130-4138; published ahead of print May 1, 2009, doi:10.1128/AEM.02890-08
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Biotechnology:

Identification of Promoters for Efficient Gene Expression in Magnetospirillum gryphiswaldense
Claus Lang, Anna Pollithy, and Dirk Schüler
Appl. Environ. Microbiol. June 2009 75: 4206-4210; published ahead of print April 24, 2009, doi:10.1128/AEM.02906-08
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Author's Correction:

High-Level Diversity of Dinoflagellates in the Natural Environment, Revealed by Assessment of Mitochondrial cox1 and cob Genes for Dinoflagellate DNA Barcoding
Senjie Lin, Huan Zhang, Yubo Hou, Yunyun Zhuang, and Lilibeth Miranda
Appl. Environ. Microbiol. June 2009 75: 4230
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.