AEM -- Table of Contents (May 1 2009, 75 [9])

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Contents: May 2009, Volume 75, Issue 9

       Environmental Microbiology

       Biodegradation

       Public Health Microbiology

       Genetics and Molecular Biology

       Evolutionary and Genomic Microbiology

       Methods

       Biotechnology

       Food Microbiology

       Plant Microbiology

       Microbial Ecology

       Mycology

       Enzymology and Protein Engineering

       Invertebrate Microbiology

       Physiology

       Geomicrobiology

       Errata

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Environmental Microbiology:

Effect of Substrate Concentration on Carbon Isotope Fractionation during Acetoclastic Methanogenesis by Methanosarcina barkeri and M. acetivorans and in Rice Field Soil
Dennis Goevert and Ralf Conrad
Appl. Environ. Microbiol. May 2009 75: 2605-2612; published ahead of print February 27, 2009, doi:10.1128/AEM.02680-08
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Characterization of a Dehalobacter Coculture That Dechlorinates 1,2-Dichloroethane to Ethene and Identification of the Putative Reductive Dehalogenase Gene
Ariel Grostern and Elizabeth A. Edwards
Appl. Environ. Microbiol. May 2009 75: 2684-2693; published ahead of print March 6, 2009, doi:10.1128/AEM.02037-08
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Migratory Response of Soil Bacteria to Lyophyllum sp. Strain Karsten in Soil Microcosms
J. A. Warmink and J. D. van Elsas
Appl. Environ. Microbiol. May 2009 75: 2820-2830; published ahead of print March 13, 2009, doi:10.1128/AEM.02110-08
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Biodegradation:

Characterization of a Polycyclic Aromatic Hydrocarbon Degradation Gene Cluster in a Phenanthrene-Degrading Acidovorax Strain
David R. Singleton, Liza Guzmán Ramirez, and Michael D. Aitken
Appl. Environ. Microbiol. May 2009 75: 2613-2620; published ahead of print March 6, 2009, doi:10.1128/AEM.01955-08
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Pathway and Evolutionary Implications of Diphenylamine Biodegradation by Burkholderia sp. Strain JS667
Kwanghee A. Shin and Jim C. Spain
Appl. Environ. Microbiol. May 2009 75: 2694-2704; published ahead of print February 27, 2009, doi:10.1128/AEM.02198-08
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Public Health Microbiology:

Influence of a Probiotic Strain of Enterococcus faecium on Salmonella enterica Serovar Typhimurium DT104 Infection in a Porcine Animal Infection Model
István Szabó, Lothar H. Wieler, Karsten Tedin, Lydia Scharek-Tedin, David Taras, Andreas Hensel, Bernd Appel, and Karsten Nöckler
Appl. Environ. Microbiol. May 2009 75: 2621-2628; published ahead of print March 6, 2009, doi:10.1128/AEM.01515-08
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Treatment of Fungal Bioaerosols by a High-Temperature, Short-Time Process in a Continuous-Flow System
Jae Hee Jung, Jung Eun Lee, Chang Ho Lee, Sang Soo Kim, and Byung Uk Lee
Appl. Environ. Microbiol. May 2009 75: 2742-2749; published ahead of print February 6, 2009, doi:10.1128/AEM.01790-08
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Detection of Adenoviruses and Rotaviruses in Drinking Water Sources Used In Rural Areas of Benin, West Africa
Jens Verheyen, Monika Timmen-Wego, Rainer Laudien, Ibrahim Boussaad, Sibel Sen, Aynur Koc, Alexandra Uesbeck, Farouk Mazou, and Herbert Pfister
Appl. Environ. Microbiol. May 2009 75: 2798-2801; published ahead of print March 6, 2009, doi:10.1128/AEM.01807-08
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Antimicrobial Properties of a Novel Silver-Silica Nanocomposite Material
Salome Egger, Rainer P. Lehmann, Murray J. Height, Martin J. Loessner, and Markus Schuppler
Appl. Environ. Microbiol. May 2009 75: 2973-2976; published ahead of print March 6, 2009, doi:10.1128/AEM.01658-08
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UV Light Inactivation of Bacterial Biothreat Agents
L. J. Rose and H. O'Connell
Appl. Environ. Microbiol. May 2009 75: 2987-2990; published ahead of print March 6, 2009, doi:10.1128/AEM.02180-08
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Genetics and Molecular Biology:

AguR Is Required for Induction of the Streptococcus mutans Agmatine Deiminase System by Low pH and Agmatine
Yaling Liu, Lin Zeng, and Robert A. Burne
Appl. Environ. Microbiol. May 2009 75: 2629-2637; published ahead of print March 6, 2009, doi:10.1128/AEM.02145-08
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Generation of Single-Copy Transposon Insertions in Clostridium perfringens by Electroporation of Phage Mu DNA Transposition Complexes
A. Lanckriet, L. Timbermont, L. J. Happonen, M. I. Pajunen, F. Pasmans, F. Haesebrouck, R. Ducatelle, H. Savilahti, and F. Van Immerseel
Appl. Environ. Microbiol. May 2009 75: 2638-2642; published ahead of print March 6, 2009, doi:10.1128/AEM.02214-08
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Characterization of a New Plasmid-Like Prophage in a Pandemic Vibrio parahaemolyticus O3:K6 Strain
Shih-Feng Lan, Chung-Ho Huang, Chuan-Hsiung Chang, Wei-Chao Liao, I-Hsuan Lin, Wan-Neng Jian, Yueh-Gin Wu, Shau-Yan Chen, and Hin-chung Wong
Appl. Environ. Microbiol. May 2009 75: 2659-2667; published ahead of print March 13, 2009, doi:10.1128/AEM.02483-08
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Mixed-Species Genomic Microarray Analysis of Fecal Samples Reveals Differential Transcriptional Responses of Bifidobacteria in Breast- and Formula-Fed Infants
Eline S. Klaassens, Rolf J. Boesten, Monique Haarman, Jan Knol, Frank H. Schuren, Elaine E. Vaughan, and Willem M. de Vos
Appl. Environ. Microbiol. May 2009 75: 2668-2676; published ahead of print March 13, 2009, doi:10.1128/AEM.02492-08
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Reduction of Tumor Necrosis Factor Alpha-Inducing Capacity of Recombinant Lactobacillus casei via Expression of Salmonella OmpC
A. Kajikawa and S. Igimi
Appl. Environ. Microbiol. May 2009 75: 2727-2734; published ahead of print March 6, 2009, doi:10.1128/AEM.01916-08
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FvtA Is the Receptor for the Siderophore Vanchrobactin in Vibrio anguillarum: Utility as a Route of Entry for Vanchrobactin Analogues
Miguel Balado, Carlos R. Osorio, and Manuel L. Lemos
Appl. Environ. Microbiol. May 2009 75: 2775-2783; published ahead of print March 6, 2009, doi:10.1128/AEM.02897-08
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Glycerol Utilization Gene Cluster in Streptomyces clavuligerus
Sonia Baños, Rosario Pérez-Redondo, Bert Koekman, and Paloma Liras
Appl. Environ. Microbiol. May 2009 75: 2991-2995; published ahead of print March 13, 2009, doi:10.1128/AEM.00181-09
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Evolutionary and Genomic Microbiology:

Comparative Genomic Hybridization Analysis of Two Predominant Nordic Group I (Proteolytic) Clostridium botulinum Type B Clusters
Miia Lindström, Katja Hinderink, Panu Somervuo, Katri Kiviniemi, Mari Nevas, Ying Chen, Petri Auvinen, Andrew T. Carter, David R. Mason, Michael W. Peck, and Hannu Korkeala
Appl. Environ. Microbiol. May 2009 75: 2643-2651; published ahead of print March 6, 2009, doi:10.1128/AEM.02557-08
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Eukaryotic nirK Genes Encoding Copper-Containing Nitrite Reductase: Originating from the Protomitochondrion?
Sang-Wan Kim, Shinya Fushinobu, Shengmin Zhou, Takayoshi Wakagi, and Hirofumi Shoun
Appl. Environ. Microbiol. May 2009 75: 2652-2658; published ahead of print March 6, 2009, doi:10.1128/AEM.02536-08
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Osmoadaptation among Vibrio Species and Unique Genomic Features and Physiological Responses of Vibrio parahaemolyticus
Lynn M. Naughton, Seth L. Blumerman, Megan Carlberg, and E. Fidelma Boyd
Appl. Environ. Microbiol. May 2009 75: 2802-2810; published ahead of print March 13, 2009, doi:10.1128/AEM.01698-08
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Host-Directed Evolution of a Novel Lactate Oxidase in Streptococcus iniae Isolates from Barramundi (Lates calcarifer)
Roslina A. Nawawi, Justice C. F. Baiano, E. Charlotte E. Kvennefors, and Andrew C. Barnes
Appl. Environ. Microbiol. May 2009 75: 2908-2919; published ahead of print March 6, 2009, doi:10.1128/AEM.02147-08
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Methods:

Empirical Testing of 16S rRNA Gene PCR Primer Pairs Reveals Variance in Target Specificity and Efficacy Not Suggested by In Silico Analysis
Sergio E. Morales and William E. Holben
Appl. Environ. Microbiol. May 2009 75: 2677-2683; published ahead of print February 27, 2009, doi:10.1128/AEM.02166-08
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Heterologous Expression of Tulip Petal Plasma Membrane Aquaporins in Pichia pastoris for Water Channel Analysis
Abul Kalam Azad, Yoshihiro Sawa, Takahiro Ishikawa, and Hitoshi Shibata
Appl. Environ. Microbiol. May 2009 75: 2792-2797; published ahead of print February 27, 2009, doi:10.1128/AEM.02335-08
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Evaluation of Single-Nucleotide Primer Extension for Detection and Typing of Phylogenetic Markers Used for Investigation of Microbial Communities
Marcell Nikolausz, Antonis Chatzinotas, András Táncsics, Gwenaël Imfeld, and Matthias Kästner
Appl. Environ. Microbiol. May 2009 75: 2850-2860; published ahead of print February 27, 2009, doi:10.1128/AEM.01910-08
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Pyrosequencing of the Chaperonin-60 Universal Target as a Tool for Determining Microbial Community Composition
John Schellenberg, Matthew G. Links, Janet E. Hill, Tim J. Dumonceaux, Geoffrey A. Peters, Shaun Tyler, T. Blake Ball, Alberto Severini, and Francis A. Plummer
Appl. Environ. Microbiol. May 2009 75: 2889-2898; published ahead of print March 6, 2009, doi:10.1128/AEM.01640-08
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PCR-Based Method Using Propidium Monoazide To Distinguish Viable from Nonviable Bacillus subtilis Spores
H. Rawsthorne, C. N. Dock, and L. A. Jaykus
Appl. Environ. Microbiol. May 2009 75: 2936-2939; published ahead of print March 6, 2009, doi:10.1128/AEM.02524-08
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Discrimination of Viable and Dead Fecal Bacteroidales Bacteria by Quantitative PCR with Propidium Monoazide
Sungwoo Bae and Stefan Wuertz
Appl. Environ. Microbiol. May 2009 75: 2940-2944; published ahead of print March 6, 2009, doi:10.1128/AEM.01333-08
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Panel of 23S rRNA Gene-Based Real-Time PCR Assays for Improved Universal and Group-Specific Detection of Phytoplasmas
Jennifer Hodgetts, Neil Boonham, Rick Mumford, and Matthew Dickinson
Appl. Environ. Microbiol. May 2009 75: 2945-2950; published ahead of print March 6, 2009, doi:10.1128/AEM.02610-08
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TaqMan Probe-Based Real-Time PCR Assay for Detection and Discrimination of Class I, II, and III tfdA Genes in Soils Treated with Phenoxy Acid Herbicides
Jacob Bælum and Carsten S. Jacobsen
Appl. Environ. Microbiol. May 2009 75: 2969-2972; published ahead of print February 27, 2009, doi:10.1128/AEM.02051-08
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Biotechnology:

Mutagenesis of the Bacterial RNA Polymerase Alpha Subunit for Improvement of Complex Phenotypes
Daniel Klein-Marcuschamer, Christine Nicole S. Santos, Huimin Yu, and Gregory Stephanopoulos
Appl. Environ. Microbiol. May 2009 75: 2705-2711; published ahead of print February 27, 2009, doi:10.1128/AEM.01888-08
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De Novo Biosynthesis of Vanillin in Fission Yeast (Schizosaccharomyces pombe) and Baker's Yeast (Saccharomyces cerevisiae)
Esben H. Hansen, Birger Lindberg Møller, Gertrud R. Kock, Camilla M. Bünner, Charlotte Kristensen, Ole R. Jensen, Finn T. Okkels, Carl E. Olsen, Mohammed S. Motawia, and Jørgen Hansen
Appl. Environ. Microbiol. May 2009 75: 2765-2774; published ahead of print March 13, 2009, doi:10.1128/AEM.02681-08
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Establishment of Oxidative D-Xylose Metabolism in Pseudomonas putida S12
Jean-Paul Meijnen, Johannes H. de Winde, and Harald J. Ruijssenaars
Appl. Environ. Microbiol. May 2009 75: 2784-2791; published ahead of print March 6, 2009, doi:10.1128/AEM.02713-08
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Biosynthesis of Sibiromycin, a Potent Antitumor Antibiotic
Wei Li, Ankush Khullar, ShenChieh Chou, Ashley Sacramo, and Barbara Gerratana
Appl. Environ. Microbiol. May 2009 75: 2869-2878; published ahead of print March 6, 2009, doi:10.1128/AEM.02326-08
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Comparison of Planktonic and Biofilm Cultures of Pseudomonas fluorescens DSM 8341 Cells Grown on Fluoroacetate
Barry Heffernan, Cormac D. Murphy, and Eoin Casey
Appl. Environ. Microbiol. May 2009 75: 2899-2907; published ahead of print March 13, 2009, doi:10.1128/AEM.01530-08
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Cloning and Characterization of the Biosynthetic Gene Cluster for Tomaymycin, an SJG-136 Monomeric Analog
Wei Li, ShenChieh Chou, Ankush Khullar, and Barbara Gerratana
Appl. Environ. Microbiol. May 2009 75: 2958-2963; published ahead of print March 6, 2009, doi:10.1128/AEM.02325-08
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Rapid Identification of Genes Encoding DNA Polymerases by Function-Based Screening of Metagenomic Libraries Derived from Glacial Ice
Carola Simon, Judith Herath, Stephanie Rockstroh, and Rolf Daniel
Appl. Environ. Microbiol. May 2009 75: 2964-2968; published ahead of print March 6, 2009, doi:10.1128/AEM.02644-08
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Quantitative Approach to Determining the Contribution of Viable-but-Nonculturable Subpopulations to Malolactic Fermentation Processes
Covadonga Quirós, Mónica Herrero, Luis A. García, and Mario Díaz
Appl. Environ. Microbiol. May 2009 75: 2977-2981; published ahead of print March 6, 2009, doi:10.1128/AEM.01707-08
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Food Microbiology:

Contrasting Effects of Heat Treatment and Incubation Temperature on Germination and Outgrowth of Individual Spores of Nonproteolytic Clostridium botulinum Bacteria
Sandra C. Stringer, Martin D. Webb, and Michael W. Peck
Appl. Environ. Microbiol. May 2009 75: 2712-2719; published ahead of print March 6, 2009, doi:10.1128/AEM.02572-08
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Development and Application of a Novel Peptide Nucleic Acid Probe for the Specific Detection of Cronobacter Genomospecies (Enterobacter sakazakii) in Powdered Infant Formula
C. Almeida, N. F. Azevedo, C. Iversen, S. Fanning, C. W. Keevil, and M. J. Vieira
Appl. Environ. Microbiol. May 2009 75: 2925-2930; published ahead of print March 6, 2009, doi:10.1128/AEM.02470-08
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Plant Microbiology:

Effect of Iron Concentration on the Growth Rate of Pseudomonas syringae and the Expression of Virulence Factors in hrp-Inducing Minimal Medium
Beum Jun Kim, Joon Ho Park, Tai Hyun Park, Philip A. Bronstein, David J. Schneider, Samuel W. Cartinhour, and Michael L. Shuler
Appl. Environ. Microbiol. May 2009 75: 2720-2726; published ahead of print March 6, 2009, doi:10.1128/AEM.02738-08
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Striking Diversity of vmp1, a Variable Gene Encoding a Putative Membrane Protein of the Stolbur Phytoplasma
Agnès Cimerman, Davide Pacifico, Pascal Salar, Cristina Marzachì, and Xavier Foissac
Appl. Environ. Microbiol. May 2009 75: 2951-2957; published ahead of print March 6, 2009, doi:10.1128/AEM.02613-08
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Microbial Ecology:

Proliferation of Antibiotic-Producing Bacteria and Concomitant Antibiotic Production as the Basis for the Antibiotic Activity of Jordan's Red Soils
Joseph O. Falkinham, III, Thomas E. Wall, Justin R. Tanner, Khaled Tawaha, Feras Q. Alali, Chen Li, and Nicholas H. Oberlies
Appl. Environ. Microbiol. May 2009 75: 2735-2741; published ahead of print March 13, 2009, doi:10.1128/AEM.00104-09
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High Rate of N₂ Fixation by East Siberian Cryophilic Soil Bacteria as Determined by Measuring Acetylene Reduction in Nitrogen-Poor Medium Solidified with Gellan Gum
Shintaro Hara, Yasuyuki Hashidoko, Roman V. Desyatkin, Ryusuke Hatano, and Satoshi Tahara
Appl. Environ. Microbiol. May 2009 75: 2811-2819; published ahead of print March 13, 2009, doi:10.1128/AEM.02660-08
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Phylogenetic and Chemical Diversity of Three Chemotypes of Bloom-Forming Lyngbya Species (Cyanobacteria: Oscillatoriales) from Reefs of Southeastern Florida
Koty Sharp, Karen E. Arthur, Liangcai Gu, Cliff Ross, Genelle Harrison, Sarath P. Gunasekera, Theresa Meickle, Susan Matthew, Hendrik Luesch, Robert W. Thacker, David H. Sherman, and Valerie J. Paul
Appl. Environ. Microbiol. May 2009 75: 2879-2888; published ahead of print March 6, 2009, doi:10.1128/AEM.02656-08
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Global Distribution and Evolution of a Toxinogenic Burkholderia-Rhizopus Symbiosis
Gerald Lackner, Nadine Möbius, Kirstin Scherlach, Laila P. Partida-Martinez, Robert Winkler, Imke Schmitt, and Christian Hertweck
Appl. Environ. Microbiol. May 2009 75: 2982-2986; published ahead of print March 13, 2009, doi:10.1128/AEM.01765-08
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Mycology:

Cellobiose Dehydrogenase from the Ligninolytic Basidiomycete Ceriporiopsis subvermispora
Wolfgang Harreither, Christoph Sygmund, Evelyn Dünhofen, Rafael Vicuña, Dietmar Haltrich, and Roland Ludwig
Appl. Environ. Microbiol. May 2009 75: 2750-2757; published ahead of print March 6, 2009, doi:10.1128/AEM.02320-08
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Enzymology and Protein Engineering:

Purification, Characterization, and Potential Bacterial Wax Production Role of an NADPH-Dependent Fatty Aldehyde Reductase from Marinobacter aquaeolei VT8
Bradley D. Wahlen, Whitney S. Oswald, Lance C. Seefeldt, and Brett M. Barney
Appl. Environ. Microbiol. May 2009 75: 2758-2764; published ahead of print March 6, 2009, doi:10.1128/AEM.02578-08
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Invertebrate Microbiology:

The Ultramicrobacterium "Elusimicrobium minutum" gen. nov., sp. nov., the First Cultivated Representative of the Termite Group 1 Phylum
Oliver Geissinger, Daniel P. R. Herlemann, Erhard Mörschel, Uwe G. Maier, and Andreas Brune
Appl. Environ. Microbiol. May 2009 75: 2831-2840; published ahead of print March 6, 2009, doi:10.1128/AEM.02697-08
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Genomic Analysis of "Elusimicrobium minutum," the First Cultivated Representative of the Phylum "Elusimicrobia" (Formerly Termite Group 1)
D. P. R. Herlemann, O. Geissinger, W. Ikeda-Ohtsubo, V. Kunin, H. Sun, A. Lapidus, P. Hugenholtz, and A. Brune
Appl. Environ. Microbiol. May 2009 75: 2841-2849; published ahead of print March 6, 2009, doi:10.1128/AEM.02698-08
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Physiology:

DNA as an Adhesin: Bacillus cereus Requires Extracellular DNA To Form Biofilms
Sébastien Vilain, Jakobus M. Pretorius, Jacques Theron, and Volker S. Brözel
Appl. Environ. Microbiol. May 2009 75: 2861-2868; published ahead of print February 27, 2009, doi:10.1128/AEM.01317-08
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Streptomyces Development in Colonies and Soils
Angel Manteca and Jesus Sanchez
Appl. Environ. Microbiol. May 2009 75: 2920-2924; published ahead of print March 6, 2009, doi:10.1128/AEM.02288-08
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Geomicrobiology:

Antibody Recognition Force Microscopy Shows that Outer Membrane Cytochromes OmcA and MtrC Are Expressed on the Exterior Surface of Shewanella oneidensis MR-1
Brian H. Lower, Ruchirej Yongsunthon, Liang Shi, Linda Wildling, Hermann J. Gruber, Nicholas S. Wigginton, Catherine L. Reardon, Grigoriy E. Pinchuk, Timothy C. Droubay, Jean-François Boily, and Steven K. Lower
Appl. Environ. Microbiol. May 2009 75: 2931-2935; published ahead of print March 13, 2009, doi:10.1128/AEM.02108-08
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Errata:

Enhanced Secretion of Biologically Active Murine Interleukin-12 by Lactococcus lactis
Antonio Fernandez, Nikki Horn, Udo Wegmann, Claudio Nicoletti, Michael J. Gasson, and Arjan Narbad
Appl. Environ. Microbiol. May 2009 75: 2996
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Growth of Enterococci in Unaltered, Unseeded Beach Sands Subjected to Tidal Wetting
Kevan M. Yamahara, Sarah P. Walters, and Alexandria B. Boehm
Appl. Environ. Microbiol. May 2009 75: 2997
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Bacteriophage P22 and Staphylococcus aureus Attenuation on Nonporous Fomites as Determined by Plate Assay and Quantitative PCR
Yoshifumi Masago, Tomoyuki Shibata, and Joan B. Rose
Appl. Environ. Microbiol. May 2009 75: 2998
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To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.