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Methods

In Situ Detection of the Clostridium botulinum Type C1 Toxin Gene in Wetland Sediments with a Nested PCR Assay

Judy L. Williamson, Tonie E. Rocke, Judd M. Aiken
Judy L. Williamson
U.S. Fish and Wildlife Service, National Wildlife Health Center, Madison, Wisconsin 53711, and
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Tonie E. Rocke
U.S. Fish and Wildlife Service, National Wildlife Health Center, Madison, Wisconsin 53711, and
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Judd M. Aiken
Department of Animal Health and Biomedical Sciences, University of Wisconsin—Madison, Madison, Wisconsin 53706
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DOI: 10.1128/AEM.65.7.3240-3243.1999
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    Fig. 1.

    Detection of the C1 toxin gene amplification products in DNA samples isolated from sediments collected at botulism outbreak and nonoutbreak sites. (A) ToxC-384/850R/625 primer combination; (B) ToxC-625/1049R/850R primer combination. Images were generated with Photoshop version 5.02 and Freehand version 7.02 software. Letters and numbers above the lanes are sample designations. NTC, no-template control.

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    Fig. 2.

    Detection of the C1 toxin gene in strain 96 SAC bacterial cells or spores added to sediment sample K7A prior to DNA extraction and purification. Images were generated with Photoshop version 5.02 and Freehand version 7.02 software.

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  • Table 1.

    Oligonucleotide primers for PCR analysis of the C. botulinum C1 toxin gene

    DirectionPrimeraSequence
    SenseToxC-3845′384AAACCTCCTCGAGTTACAAGCCC406 3′
    ToxC-6255′625CTAGACAAGGTAACAACTGGGTTA648 3′
    AntisenseToxC-850R5′850GAAAATCTACCCTCTCCTACATCA827 3′
    ToxC-1049R5′1049AATAAGGTCTATAGTTGGACCTCC1026 3′
    • ↵a The locations of the PCR primers are indicated by the primer names. Primers were numbered according to the published strain 468C C1 toxin gene DNA sequence (3a) (GenBank accession no. X53751 ).

  • Table 2.

    Detection of the C1 toxin gene in sediments collected from outbreak and nonoutbreak wetlands

    StatusWetland complexWetland sampleNo. of samples in which product was detected/total no. of samples
    OutbreakKulm WMDKm12/2a
    Sutter NWRSu203/3a
    Klamath NWRK4C1/1b
    K7A5/6b
    K91/1b
     Total12/13
    NonoutbreakKulm WMDKm21/2a
    Sutter NWRSu193/3a
     Total4/5
    • ↵a Primer combination ToxC-384/850R/625.

    • ↵b Primer combination ToxC-625/1049R/850R.

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In Situ Detection of the Clostridium botulinum Type C1 Toxin Gene in Wetland Sediments with a Nested PCR Assay
Judy L. Williamson, Tonie E. Rocke, Judd M. Aiken
Applied and Environmental Microbiology Jul 1999, 65 (7) 3240-3243; DOI: 10.1128/AEM.65.7.3240-3243.1999

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In Situ Detection of the Clostridium botulinum Type C1 Toxin Gene in Wetland Sediments with a Nested PCR Assay
Judy L. Williamson, Tonie E. Rocke, Judd M. Aiken
Applied and Environmental Microbiology Jul 1999, 65 (7) 3240-3243; DOI: 10.1128/AEM.65.7.3240-3243.1999
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KEYWORDS

Bird Diseases
Botulinum Toxins
Botulism
Clostridium botulinum
Geologic Sediments

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