DOI: 10.1128/AEM.65.9.4264-4267.1999
Article Figures & Data
Tables
- Table 1.
Lactobacillus isolates identified on the basis of percent similarity to 16S-23S small spacer region sequences in GenBank
Isolate Source GenBank accession no. of 16S-23S sequence Species identification based on 16S-23S sequence % Similarity of 16S-23S sequence to that of reference strains in GenBank GenBank accession no. of V2-V3 sequence Species identification based on sequence of 16S V2-V3 region GTH1 Human AF158557 L. salivarius subsp.salivarius 100.0 NAa NDb GTH2 Human AF158558 Unidentified NA AF157030 W. confusa GTH5 Human AF158559 L. gasseri 98.6 AF157044 L. gasseri GTH6 Human AF158560 L. gasseri 98.2 AF157033 L. gasseri GTH7 Human AF158561 L. ruminis 99.5 NA ND GTH8 Human AF158562 Unidentified NA AF157045 W. confusa GTH10 Human AF158563 L. fermentum 99.0 NA ND GTH13 Human AF158564 L. rhamnosus 99.5 NA ND GTH15 Human AF158565 L. casei 99.5 AF157043 L. casei group GTH17 Human AF158566 L. rhamnosus 99.5 NA ND GTH18 Human AF158567 L. brevis 98.2 AF157038 L. brevis GTH20 Human AF158568 L. rhamnosus 99.5 NA ND GTH22 Human AF158569 Unidentified NA AF157037 W. confusa GTH24 Human AF158570 Unidentified NA AF157031 W. confusa GTH26 Human AF158571 Unidentified NA AF157034 W. confusa GTH28 Human AF158572 L. ruminis 98.6 AF157032 L. ruminis GTH29 Human AF158573 L. gasseri 98.6 AF157039 L. gasseri GTH30 Human AF158574 L. casei 99.1 AF157042 L. casei group GTH32 Human AF158575 L. rhamnosus 100.0 NA ND GTH33 Human AF158576 L. fermentum 99.5 NA ND JNI Yoghurt AF158577 L. delbrueckii subsp.bulgaricus 98.5 AF157040 L. delbrueckii JN2 Yoghurt AF158578 L. delbrueckii subsp.bulgaricus 99.5 NA ND JN3 Yoghurt AF158579 L. helveticus 99.5 NA ND JN4 Yoghurt AF158580 L. delbrueckii subsp.bulgaricus 98.6 AF157041 L. delbrueckii JN5 Yoghurt AF158581 L. acidophilus 100.0 NA ND JN6 Yoghurt AF158582 L. acidophilus 100.0 NA ND JN7 Yoghurt AF158583 L. acidophilus 100.0 NA ND JN8 Yoghurt AF158584 L. helveticus 99.5 NA ND JN9 Yoghurt AF158585 L. acidophilus 100.0 NA ND JN10 Yoghurt AF158586 L. rhamnosus 100.0 NA ND GTP1 Pig AF158587 L. crispatus 100.0 NA ND GTP2 Pig AF158588 L. crispatus 100.0 NA ND GTP3 Pig AF158589 L. crispatus 100.0 NA ND GTP4 Pig AF158590 L. reuteri 100.0 NA ND GTP5 Pig AF158591 L. crispatus 98.5 AF157035 L. crispatus/L. gallinarum GTP6 Pig AF158592 L. crispatus 100.0 NA ND SR1 Silage AF158593 L. pentosus/L. plantarum 99.5 NA ND SR2 Silage AF158594 L. pentosus/L. plantarum 97.5 AF157036 L. pentosus/L. plantarum GTR1 Mouse AF158595 L. reuteri 100.0 NA ND GTR3 Rat AF158596 L. reuteri 100.0 NA ND - Table 2.
GenBank Lactobacillus 16S-23S intergenic spacer region sequences used to identify isolates
Species Straina GenBank accession no. L. acidophilus ATCC 4356T U32971 L. brevis IFO 13110 X74221 L. casei ATCC 334T AF121200 L. crispatus ATCC 33820T AF074857 L. curvatus DSM 20019T U97129 L. delbrueckii subsp.bulgaricus ATCC 11842T AF113602 L. delbrueckii subsp. lactis ATCC 15808 U32968 L. fermentum ATCC 14931T AF080099 L. gasseri ATCC 33323T AF074859 L. graminis DSM 20719T U97130 L. hamsteri ATCC 43851T AF113601 L. helveticus ATCC 15009T U32970 L. johnsonii ATCC 33200T AF074860 L. pentosus ATCC 8041T U97134 L. plantarum ATCC 14917T AF080101 L. reuteri DSM 20016T AF080100 L. rhamnosus ATCC 7469T AF121201 L. ruminis ATCC 277780T AF080103 L. sake ATCC 15521T U97131 L. salivarius subsp.salicinius ATCC 11742T AF080102 L. salivarius subsp. salivarius ATCC 11741T AF113600 L. sharpeae DSM 20505T AF074861 L. zeae ATCC 393T AF074862 ↵a ATCC, American Type Culture Collection, Manassas, Va.; DSM, Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH, Braunschweig, Germany; superscripted T, type culture.
