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Plant Microbiology

Comparison of Crenarchaeal Consortia Inhabiting the Rhizosphere of Diverse Terrestrial Plants with Those in Bulk Soil in Native Environments

Marek K. Sliwinski, Robert M. Goodman
Marek K. Sliwinski
1Department of Plant Pathology and
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  • For correspondence: mksliwin@wisc.edu
Robert M. Goodman
1Department of Plant Pathology and
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DOI: 10.1128/AEM.70.3.1821-1826.2004
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  • FIG. 1.
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    FIG. 1.

    PCR-SSCP electropherograms representing the range of bulk soil to rhizosphere comparisons found in this study. Paired samples exhibiting major differences in relative diversity were found for all of the terrestrial plant groups sampled (A), and paired samples exhibiting very similar PCR-SSCP profiles were also found for all of the plant groups sampled (B). The x and y axes of each electropherogram represent relative migration distance and relative fluorescence intensity, respectively.

  • FIG. 2.
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    FIG. 2.

    PCR-SSCP electropherograms of bulk soil and rhizosphere samples collected at two sampling plots located by Stone's Pocket Road. Six paired samples were collected from sampling plot I (A), and seven paired samples were collected from sampling plot J (B). Plot I samples produced minor differences between the rhizosphere and the corresponding bulk soil. In contrast, plot J samples exhibited major differences. The x and y axes of each electropherogram represent relative migration distance and relative fluorescence intensity, respectively.

  • FIG. 3.
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    FIG. 3.

    PCA ordination of the difference between rhizosphere and bulk soil PCR-SSCP profiles (dmatrix) by sampling plot. Plot designations A to L are defined in Table 1. prin1 (17% variance explained) is plotted along the x axis, and prin2 (13% variance explained) is plotted along the y axis. The origin represents identical paired PCR-SSCP rhizosphere and bulk soil profiles (dmatrix = 0). Each data point represents a single paired rhizosphere and bulk soil sample (n = 76 across all plots).

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  • TABLE 1.

    Rhizosphere sampling plots

    Sampling plotaLocationSoil series (classification)Plant groups sampledcNo. of samplesbUTMd (zone 16) coordinatesCollection date
    AHancockPlainfield sand (Typic Udipsamment)2b, 3d, 1g64,888,042.3 296,967.110/11/01
    BStone's Pocket Rd.Baraboo silt loam (Typic Hapludalf)1p, 1d, 1m34,807,494.2 273,380.410/19/01
    CSimpson Rd.Marshan loam (Typic Haplaquoll)1b, 1l, 1p, 1g, 1d, 1m64,829,635.3 265,720.110/19/01
    DHancockPlainfield sand (Typic Udipsamment)2g, 2d, 2m64,888,134.2 296,995.311/15/01
    EHancockPlainfield sand (Typic Udipsamment)2b, 2g, 2d, 2m84,888,174.1 296,990.611/16/01
    FHancockPlainfield sand (Typic Udipsamment)1b, 2g, 2d, 2m74,888,167.1 297,023.511/16/01
    GPicnic PointKidder silt loam (Typic Hapludalf)4d, 4m84,773,268.2 302,360.011/16/01
    HPicnic PointSt. Charles silt loam (Typic Hapludalf)2b, 3d54,773,223.5 302,369.411/20/01
    IStone's Pocket Rd.Baraboo silt loam (Typic Hapludalf)1b, 1l, 1p, 1g, 1d, 1m64,807,494.3 273,378.411/21/01
    JStone's Pocket Rd.Baraboo silt loam (Typic Hapludalf)1b, 2l, 1p, 1g, 1d, 1m74,807,573.2 273,414.011/21/01
    KSimpson Rd.Boone sands (Typic Quartzipsamment)2l, 1p, 1g, 1d, 1m64,830,035.3 265,767.111/26/01
    LStone's Pocket Rd.Baraboo stoney silt loam (Typic Hapludalf)2b, 1l, 2p, 1g, 1d, 1m84,807,479.2 273,395.411/28/01
    • ↵ a Nonoverlapping sampling plots were no larger than 50 m2.

    • ↵ b Number of paired samples (rhizosphere and corresponding bulk soil). Total, 76.

    • ↵ c b, bryophyte (moss); l, lycopod (club moss); p, pteridophyte (fern); g, gymnosperm (conifer); d, dicotyledonous (dicot); m, monocotyledonous (monocot).

    • ↵ d UTM, Universal Transverse Mercator.

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Comparison of Crenarchaeal Consortia Inhabiting the Rhizosphere of Diverse Terrestrial Plants with Those in Bulk Soil in Native Environments
Marek K. Sliwinski, Robert M. Goodman
Applied and Environmental Microbiology Mar 2004, 70 (3) 1821-1826; DOI: 10.1128/AEM.70.3.1821-1826.2004

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Comparison of Crenarchaeal Consortia Inhabiting the Rhizosphere of Diverse Terrestrial Plants with Those in Bulk Soil in Native Environments
Marek K. Sliwinski, Robert M. Goodman
Applied and Environmental Microbiology Mar 2004, 70 (3) 1821-1826; DOI: 10.1128/AEM.70.3.1821-1826.2004
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KEYWORDS

Crenarchaeota
plants
soil microbiology

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