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Table of Contents

March 2006; Volume 72,Issue 3

Minireviews

  • Minireview
    Identifying the Dominant Soil Bacterial Taxa in Libraries of 16S rRNA and 16S rRNA Genes
    Peter H. Janssen
  • Minireview
    Bile Salt Hydrolase Activity in Probiotics
    Máire Begley, Colin Hill, Cormac G. M. Gahan

Mycology

  • Mycology
    Sedolisins, a New Class of Secreted Proteases from Aspergillus fumigatus with Endoprotease or Tripeptidyl-Peptidase Activity at Acidic pHs
    Utz Reichard, Barbara Léchenne, Abdul R. Asif, Frank Streit, Eric Grouzmann, Olivier Jousson, Michel Monod
  • Mycology
    Characterization of Two Polyketide Synthase Genes Involved in Zearalenone Biosynthesis in Gibberella zeae
    Iffa Gaffoor, Frances Trail
  • Mycology
    Global Carbon Utilization Profiles of Wild-Type, Mutant, and Transformant Strains of Hypocrea jecorina
    Irina S. Druzhinina, Monika Schmoll, Bernhard Seiboth, Christian P. Kubicek

Genetics and Molecular Biology

  • Genetics and Molecular Biology
    CatM Regulation of the benABCDE Operon: Functional Divergence of Two LysR-Type Paralogs in Acinetobacter baylyi ADP1
    Obidimma C. Ezezika, Lauren S. Collier-Hyams, Haley A. Dale, Andrew C. Burk, Ellen L. Neidle
  • Genetics and Molecular Biology
    Conjugal Transfer of a Toxin-Coding Megaplasmid from Bacillus thuringiensis subsp. israelensis to Mosquitocidal Strains of Bacillus sphaericus
    Katherine Gammon, Gareth W. Jones, Steven J. Hope, Cláudia M. F. de Oliveira, Lêda Regis, Maria Helena N. L. Silva Filha, Brian N. Dancer, Colin Berry
  • Genetics and Molecular Biology
    Transcriptional Analysis of the Toxin-Coding Plasmid pBtoxis from Bacillus thuringiensis subsp. israelensis
    Claudia Stein, Gareth W. Jones, Tanya Chalmers, Colin Berry
  • Genetics and Molecular Biology
    Characterization of the Terephthalate Degradation Genes of Comamonas sp. Strain E6
    Mikio Sasoh, Eiji Masai, Satoko Ishibashi, Hirofumi Hara, Naofumi Kamimura, Keisuke Miyauchi, Masao Fukuda
  • Genetics and Molecular Biology
    Resistance Determinants of a Highly Arsenic-Resistant Strain of Leptospirillum ferriphilum Isolated from a Commercial Biooxidation Tank
    I. Marla Tuffin, Stanton B. Hector, Shelly M. Deane, Douglas E. Rawlings

Physiology and Biotechnology

  • PHYSIOLOGY AND BIOTECHNOLOGY
    Novel Partial Reductive Pathway for 4-Chloronitrobenzene and Nitrobenzene Degradation in Comamonas sp. Strain CNB-1
    Jian-feng Wu, Cheng-ying Jiang, Bao-jun Wang, Ying-fei Ma, Zhi-pei Liu, Shuang-jiang Liu
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Conservation of the Pho regulon in Pseudomonas fluorescens Pf0-1
    Russell D. Monds, Peter D. Newell, Julia A. Schwartzman, George A. O'Toole
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Genome-Based Metabolic Engineering of Mannheimia succiniciproducens for Succinic Acid Production
    Sang Jun Lee, Hyohak Song, Sang Yup Lee
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Metabolic Engineering of Corynebacterium glutamicum for Trehalose Overproduction: Role of the TreYZ Trehalose Biosynthetic Pathway
    Jorge Carpinelli, Reinhard Krämer, Eduardo Agosin
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Minimization of Glycerol Production during the High-Performance Fed-Batch Ethanolic Fermentation Process in Saccharomyces cerevisiae, Using a Metabolic Model as a Prediction Tool
    Carine Bideaux, Sandrine Alfenore, Xavier Cameleyre, Carole Molina-Jouve, Jean-Louis Uribelarrea, Stéphane E. Guillouet
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Heterologous Expression of BetL, a Betaine Uptake System, Enhances the Stress Tolerance of Lactobacillus salivarius UCC118
    Vivien M. Sheehan, Roy D. Sleator, Gerald F. Fitzgerald, Colin Hill
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Generation of Novel-Substrate-Accepting Biphenyl Dioxygenases through Segmental Random Mutagenesis and Identification of Residues Involved in Enzyme Specificity
    Marco Zielinski, Silke Kahl, Christine Standfuß-Gabisch, Beatriz Cámara, Michael Seeger, Bernd Hofer
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Assessing the Impact of Denitrifier-Produced Nitric Oxide on Other Bacteria
    Peter S. Choi, Zeki Naal, Charles Moore, Emerilis Casado-Rivera, Hector D. Abruña, John D. Helmann, James P. Shapleigh
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Preferential Utilization of Aromatic Compounds over Glucose by Pseudomonas putida CSV86
    Aditya Basu, Shree K. Apte, Prashant S. Phale
  • PHYSIOLOGY AND BIOTECHNOLOGY
    Complementation of the Lactococcus lactis Secretion Machinery with Bacillus subtilis SecDF Improves Secretion of Staphylococcal Nuclease
    S. Nouaille, E. Morello, N. Cortez-Peres, Y. Le Loir, J. Commissaire, J. J. Gratadoux, E. Poumerol, A. Gruss, P. Langella

Enzymology and Protein Engineering

  • Enzymology and Protein Engineering
    In Vivo Enzyme Immobilization by Use of Engineered Polyhydroxyalkanoate Synthase
    Verena Peters, Bernd H. A. Rehm
  • Enzymology and Protein Engineering
    Control of Substrate Specificity by Active-Site Residues in Nitrobenzene Dioxygenase
    Kou-San Ju, Rebecca E. Parales
  • Enzymology and Protein Engineering
    Engineering of Cyclodextrin Glucanotransferase on the Cell Surface of Saccharomyces cerevisiae for Improved Cyclodextrin Production
    Zhankun Wang, Qingsheng Qi, Peng George Wang
  • Enzymology and Protein Engineering
    Cloning, Expression, and Characterization of Aminopeptidase P from the Hyperthermophilic Archaeon Thermococcus sp. Strain NA1
    Hyun Sook Lee, Yun Jae Kim, Seung Seob Bae, Jeong Ho Jeon, Jae Kyu Lim, Byeong Chul Jeong, Sung Gyun Kang, Jung-Hyun Lee
  • Enzymology and Protein Engineering
    Identification and Characterization of a Novel Intracellular Alkaline α-Amylase from the Hyperthermophilic Bacterium Thermotoga maritima MSB8
    Meike Ballschmiter, Ole Fütterer, Wolfgang Liebl

Microbial Ecology

  • Microbial Ecology
    Freeze-Thaw Tolerance and Clues to the Winter Survival of a Soil Community
    Virginia K. Walker, Gerald R. Palmer, Gerrit Voordouw
  • Microbial Ecology
    Effect of pH on Isolation and Distribution of Members of Subdivision 1 of the Phylum Acidobacteria Occurring in Soil
    Michelle Sait, Kathryn E. R. Davis, Peter H. Janssen
  • Microbial Ecology
    Unexpected Diversity of Bacteria Capable of Carbon Monoxide Oxidation in a Coastal Marine Environment, and Contribution of the Roseobacter-Associated Clade to Total CO Oxidation
    J. D. Tolli, S. M. Sievert, C. D. Taylor
  • Microbial Ecology
    Bacteriophage Migration via Nematode Vectors: Host-Parasite-Consumer Interactions in Laboratory Microcosms
    John J. Dennehy, Nicholas A. Friedenberg, Yul W. Yang, Paul E. Turner
  • Microbial Ecology
    Quantitative PCR Confirms Purity of Strain GT, a Novel Trichloroethene-to-Ethene-Respiring Dehalococcoides Isolate
    Youlboong Sung, Kirsti M. Ritalahti, Robert P. Apkarian, Frank E. Löffler
  • Microbial Ecology
    Selective Removal of DNA from Dead Cells of Mixed Bacterial Communities by Use of Ethidium Monoazide
    Andreas Nocker, Anne K. Camper
  • Microbial Ecology
    A Three-Dimensional Computer Model of Four Hypothetical Mechanisms Protecting Biofilms from Antimicrobials
    Jason D. Chambless, Stephen M. Hunt, Philip S. Stewart
  • Microbial Ecology
    Macroscopic Streamer Growths in Acidic, Metal-Rich Mine Waters in North Wales Consist of Novel and Remarkably Simple Bacterial Communities
    Kevin B. Hallberg, Kris Coupland, Sakurako Kimura, D. Barrie Johnson
  • Microbial Ecology
    Sulfide Oxidation Coupled to Arsenate Reduction by a Diverse Microbial Community in a Soda Lake
    James T. Hollibaugh, Charles Budinoff, Ryan A. Hollibaugh, Briana Ransom, Nasreen Bano
  • Microbial Ecology
    Non-Sulfate-Reducing, Syntrophic Bacteria Affiliated with Desulfotomaculum Cluster I Are Widely Distributed in Methanogenic Environments
    Hiroyuki Imachi, Yuji Sekiguchi, Yoichi Kamagata, Alexander Loy, Yan-Ling Qiu, Philip Hugenholtz, Nobutada Kimura, Michael Wagner, Akiyoshi Ohashi, Hideki Harada
  • Microbial Ecology
    Denitrifier Community Composition along a Nitrate and Salinity Gradient in a Coastal Aquifer
    Alyson E. Santoro, Alexandria B. Boehm, Christopher A. Francis
  • Microbial Ecology
    Phylogenetic Analysis and In Situ Identification of Bacteria Community Composition in an Acidic Sphagnum Peat Bog
    Svetlana N. Dedysh, Timofei A. Pankratov, Svetlana E. Belova, Irina S. Kulichevskaya, Werner Liesack
  • Microbial Ecology
    Discovery of a New Source of Rifamycin Antibiotics in Marine Sponge Actinobacteria by Phylogenetic Prediction
    Tae Kyung Kim, Amitha K. Hewavitharana, P. Nicholas Shaw, John A. Fuerst
  • Microbial Ecology
    Concentration-Dependent Patterns of Leucine Incorporation by Coastal Picoplankton
    Cecilia Alonso, Jakob Pernthaler
  • Microbial Ecology
    Influence of Freeze-Thaw Stress on the Structure and Function of Microbial Communities and Denitrifying Populations in Soil
    Shilpi Sharma, Zsofia Szele, Rolf Schilling, Jean Charles Munch, Michael Schloter
  • Microbial Ecology
    Diverse and Unique Picocyanobacteria in Chesapeake Bay, Revealed by 16S-23S rRNA Internal Transcribed Spacer Sequences
    Feng Chen, Kui Wang, Jinjun Kan, Marcelino T. Suzuki, K. Eric Wommack
  • Microbial Ecology
    In Situ Gene Expression by Vibrio vulnificus
    Ben Smith, James D. Oliver
  • Microbial Ecology
    Thermophilic Lifestyle for an Uncultured Archaeon from Hydrothermal Vents: Evidence from Environmental Genomics
    Hélène Moussard, Ghislaine Henneke, David Moreira, Vincent Jouffe, Purificacion López-García, Christian Jeanthon
  • Microbial Ecology
    Synbiotic Microcapsules That Enhance Microbial Viability during Nonrefrigerated Storage and Gastrointestinal Transit
    Ross Crittenden, Rangika Weerakkody, Luz Sanguansri, MaryAnn Augustin

Public Health Microbiology

  • Public Health Microbiology
    Human and Animal Enteric Caliciviruses in Oysters from Different Coastal Regions of the United States
    Veronica Costantini, Fabienne Loisy, Lynn Joens, Françoise S. Le Guyader, Linda J. Saif
  • Public Health Microbiology
    Using DNA Microarrays To Identify Library-Independent Markers for Bacterial Source Tracking
    Marilyn Soule, Edward Kuhn, Frank Loge, John Gay, Douglas R. Call
  • Public Health Microbiology
    Composition and Dynamics of Bacterial Communities of a Drinking Water Supply System as Assessed by RNA- and DNA-Based 16S rRNA Gene Fingerprinting
    Stefan Eichler, Richard Christen, Claudia Höltje, Petra Westphal, Julia Bötel, Ingrid Brettar, Arndt Mehling, Manfred G. Höfle
  • Public Health Microbiology
    Chromosomal Dynamism in Progeny of Outbreak-Related Sorbitol-Fermenting Enterohemorrhagic Escherichia coli O157:NM
    Martina Bielaszewska, Rita Prager, Wenlan Zhang, Alexander W. Friedrich, Alexander Mellmann, Helmut Tschäpe, Helge Karch
  • Public Health Microbiology
    Microbial Communities and Fecal Indicator Bacteria Associated with Cladophora Mats on Beach Sites along Lake Michigan Shores
    Ola A. Olapade, Morgan M. Depas, Erika T. Jensen, Sandra L. McLellan
  • Public Health Microbiology
    Inactivation of Single-Celled Ascaris suum Eggs by Low-Pressure UV Radiation
    Sarah A. Brownell, Kara L. Nelson
  • Public Health Microbiology
    Application of Genotyping during an Extensive Outbreak of Waterborne Giardiasis in Bergen, Norway, during Autumn and Winter 2004
    L. J. Robertson, L. Hermansen, B. K. Gjerde, E. Strand, J. O. Alvsvåg, N. Langeland
  • Public Health Microbiology
    Cryptosporidium parvum Infections in Bergen, Norway, during an Extensive Outbreak of Waterborne Giardiasis in Autumn and Winter 2004
    L. J. Robertson, T. Forberg, L. Hermansen, B. K. Gjerde, J. O. Alvsvåg, N. Langeland
  • Public Health Microbiology
    Analysis of the Clonal Relationship of Shiga Toxin-Producing Escherichia coli Serogroup O165:H25 Isolated from Cattle
    Lutz Geue, Thomas Selhorst, Christina Schnick, Birgit Mintel, Franz J. Conraths
  • Public Health Microbiology
    Analysis of Feces Samples Collected from a Wild-Bird Garden Feeding Station in Scotland for the Presence of Verocytotoxin-Producing Escherichia coli O157
    Geoffrey Foster, Judith Evans, Hazel I. Knight, Alastair W. Smith, George J. Gunn, Lesley J. Allison, Barti A. Synge, Tom W. Pennycott
  • Public Health Microbiology
    Recovery of Escherichia coli from Soil after Addition of Sterile Organic Wastes
    Adrian Unc, Julie Gardner, Susan Springthorpe

Environmental Microbiology

  • Environmental Microbiology
    Deposition of Cryptosporidium Oocysts in Streambeds
    Kristin E. Searcy, Aaron I. Packman, Edward R. Atwill, Thomas Harter
  • Environmental Microbiology
    Enhanced Exopolymer Production and Chromium Stabilization in Pseudomonas putida Unsaturated Biofilms
    John H. Priester, Scott G. Olson, Samuel M. Webb, Mary P. Neu, Larry E. Hersman, Patricia A. Holden
  • Environmental Microbiology
    “Candidatus Thiobios zoothamnicoli,” an Ectosymbiotic Bacterium Covering the Giant Marine Ciliate Zoothamnium niveum
    Christian Rinke, Stephan Schmitz-Esser, Kilian Stoecker, Andrea D. Nussbaumer, Dávid A. Molnár, Katrina Vanura, Michael Wagner, Matthias Horn, Jörg A. Ott, Monika Bright
  • Environmental Microbiology
    Chelator-Induced Dispersal and Killing of Pseudomonas aeruginosa Cells in a Biofilm
    Ehud Banin, Keith M. Brady, E. Peter Greenberg

Food Microbiology

  • Food Microbiology
    Survival and Transmission of Salmonella enterica Serovar Typhimurium in an Outdoor Organic Pig Farming Environment
    Annette Nygaard Jensen, Anders Dalsgaard, Anders Stockmarr, Eva Møller Nielsen, Dorte Lau Baggesen
  • Food Microbiology
    Transcriptional and Functional Analysis of Oxalyl-Coenzyme A (CoA) Decarboxylase and Formyl-CoA Transferase Genes from Lactobacillus acidophilus
    M. Andrea Azcarate-Peril, Jose M. Bruno-Bárcena, Hosni M. Hassan, Todd R. Klaenhammer
  • Food Microbiology
    Supplementation of the Diet with High-Viscosity Beta-Glucan Results in Enrichment for Lactobacilli in the Rat Cecum
    Jennifer Snart, Rodrigo Bibiloni, Teresa Grayson, Christophe Lay, Haiyan Zhang, Gwen E. Allison, Julie K. Laverdiere, Feral Temelli, Thavaratnam Vasanthan, Rhonda Bell, Gerald W. Tannock
  • Food Microbiology
    Detection of Vibrio parahaemolyticus in Shellfish by Use of Multiplexed Real-Time PCR with TaqMan Fluorescent Probes
    Linda N. Ward, Asim K. Bej
  • Food Microbiology
    Evidence for Distinct l-Methionine Catabolic Pathways in the Yeast Geotrichum candidum and the Bacterium Brevibacterium linens
    Kenza Arfi, Sophie Landaud, Pascal Bonnarme
  • Food Microbiology
    Kinetics of Single Cells: Observation and Modeling of a Stochastic Process
    Carmen Pin, József Baranyi
  • Food Microbiology
    Tolerance of Listeria monocytogenes to Cell Envelope-Acting Antimicrobial Agents Is Dependent on SigB
    Máire Begley, Colin Hill, R. Paul Ross
  • Food Microbiology
    Casein-Derived Antimicrobial Peptides Generated by Lactobacillus acidophilus DPC6026
    M. Hayes, R. P. Ross, G. F. Fitzgerald, C. Hill, C. Stanton

Methods

  • Methods
    In Vivo Himar1-Based Transposon Mutagenesis of Francisella tularensis
    Tamara M. Maier, Roger Pechous, Monika Casey, Thomas C. Zahrt, D. W. Frank
  • Methods
    Use of Single-Point Genome Signature Tags as a Universal Tagging Method for Microbial Genome Surveys
    Daniel van der Lelie, Celine Lesaulnier, Sean McCorkle, Joke Geets, Safiyh Taghavi, John Dunn
  • Methods
    Effect of Transport at Ambient Temperature on Detection and Isolation of Vibrio cholerae from Environmental Samples
    Munirul Alam, Abdus Sadique, Nur-A-Hasan, Nurul A. Bhuiyan, G. Balakrish Nair, A. K. Siddique, David A. Sack, Sunjukta Ahsan, Anwar Huq, R. Bradley Sack, Rita R. Colwell
  • Methods
    Evaluation of 23S rRNA PCR Primers for Use in Phylogenetic Studies of Bacterial Diversity
    Dana E. Hunt, Vanja Klepac-Ceraj, Silvia G. Acinas, Clement Gautier, Stefan Bertilsson, Martin F. Polz
  • Methods
    Transformation of Rhizobia with Broad-Host-Range Plasmids by Using a Freeze-Thaw Method
    Eva Vincze, Steve Bowra

Invertebrate Microbiology

  • Invertebrate Microbiology
    The Phytopathogen Dickeya dadantii (Erwinia chrysanthemi 3937) Is a Pathogen of the Pea Aphid
    Anne-Marie Grenier, Gabrielle Duport, Sylvie Pagès, Guy Condemine, Yvan Rahbé

Evolutionary and Genomic Microbiology

  • Evolutionary and Genomic Microbiology
    Genome Sequence of the Chemolithoautotrophic Nitrite-Oxidizing Bacterium Nitrobacter winogradskyi Nb-255
    Shawn R. Starkenburg, Patrick S. G. Chain, Luis A. Sayavedra-Soto, Loren Hauser, Miriam L. Land, Frank W. Larimer, Stephanie A. Malfatti, Martin G. Klotz, Peter J. Bottomley, Daniel J. Arp, William J. Hickey
  • Evolutionary and Genomic Microbiology
    The atu and liu Clusters Are Involved in the Catabolic Pathways for Acyclic Monoterpenes and Leucine in Pseudomonas aeruginosa
    J. A. Aguilar, A. N. Zavala, C. Díaz-Pérez, C. Cervantes, A. L. Díaz-Pérez, J. Campos-García

Biodegradation

  • Biodegradation
    Selective Biodegradation of S and N Heterocycles by a Recombinant Rhodococcus erythropolis Strain Containing Carbazole Dioxygenase
    Bo Yu, Ping Xu, Shanshan Zhu, Xiaofeng Cai, Ying Wang, Li Li, Fuli Li, Xiaoyong Liu, Cuiqing Ma
  • Biodegradation
    Conversion of Sphingobium chlorophenolicum ATCC 39723 to a Hexachlorobenzene Degrader by Metabolic Engineering
    Da-Zhong Yan, Hong Liu, Ning-Yi Zhou
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Applied and Environmental Microbiology: 72 (3)

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volume 72, issue 3
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