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Methods

Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB

T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen
T. Z. DeSantis
1Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, California 94720
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P. Hugenholtz
2Microbial Ecology Program, DOE Joint Genome Institute, 2800 Mitchell Drive, Bldg. 400-404, Walnut Creek, California 94598
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N. Larsen
3Danish Genome Institute, Gustav Wieds vej 10 C, DK-8000 Aarhus C, Denmark
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M. Rojas
4Department of Bioinformatics, Baylor University, P.O. Box 97356, 1311 S. 5th St., Waco, Texas 76798-7356
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E. L. Brodie
1Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, California 94720
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K. Keller
5Department of Bioengineering, University of California, Berkeley, California 94720
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T. Huber
6Departments of Biochemistry and Mathematics, The University of Queensland, Brisbane, Queensland 4072, Australia
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D. Dalevi
7Department of Computer Science, Chalmers University of Technology, SE-412 96 Göteborg, Sweden
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P. Hu
1Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, California 94720
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G. L. Andersen
1Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, California 94720
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  • For correspondence: GLAndersen@lbl.gov
DOI: 10.1128/AEM.03006-05
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Article Information

DOI 
https://doi.org/10.1128/AEM.03006-05
PubMed 
16820507

Published By 
American Society for Microbiology Journals
History 
  • Received December 20, 2005
  • Accepted April 15, 2006
  • Published online July 4, 2006.

Copyright & Usage 
Copyright © 2006 American Society for Microbiology

Author Information

  1. T. Z. DeSantis1,
  2. P. Hugenholtz2,
  3. N. Larsen3,
  4. M. Rojas4,
  5. E. L. Brodie1,
  6. K. Keller5,
  7. T. Huber6,
  8. D. Dalevi7,
  9. P. Hu1 and
  10. G. L. Andersen1*
  1. 1Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, California 94720
  2. 2Microbial Ecology Program, DOE Joint Genome Institute, 2800 Mitchell Drive, Bldg. 400-404, Walnut Creek, California 94598
  3. 3Danish Genome Institute, Gustav Wieds vej 10 C, DK-8000 Aarhus C, Denmark
  4. 4Department of Bioinformatics, Baylor University, P.O. Box 97356, 1311 S. 5th St., Waco, Texas 76798-7356
  5. 5Department of Bioengineering, University of California, Berkeley, California 94720
  6. 6Departments of Biochemistry and Mathematics, The University of Queensland, Brisbane, Queensland 4072, Australia
  7. 7Department of Computer Science, Chalmers University of Technology, SE-412 96 Göteborg, Sweden
  • ↵* Corresponding author. Mailing address: Center for Environmental Biotechnology, Lawrence Berkeley National Laboratory, 1 Cyclotron Road, Mail Stop 70A-3317, Berkeley, CA 94720. Phone: (510) 495-2795. Fax: (510) 486-7152. E-mail: GLAndersen{at}lbl.gov .

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen
Applied and Environmental Microbiology Jul 2006, 72 (7) 5069-5072; DOI: 10.1128/AEM.03006-05

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Greengenes, a Chimera-Checked 16S rRNA Gene Database and Workbench Compatible with ARB
T. Z. DeSantis, P. Hugenholtz, N. Larsen, M. Rojas, E. L. Brodie, K. Keller, T. Huber, D. Dalevi, P. Hu, G. L. Andersen
Applied and Environmental Microbiology Jul 2006, 72 (7) 5069-5072; DOI: 10.1128/AEM.03006-05
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KEYWORDS

Databases, Nucleic Acid
Genes, rRNA
RNA, Ribosomal, 16S
Recombination, Genetic
Sequence Alignment
Software

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