Skip to main content
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems
  • Log in
  • My alerts
  • My Cart

Main menu

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About AEM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems

User menu

  • Log in
  • My alerts
  • My Cart

Search

  • Advanced search
Applied and Environmental Microbiology
publisher-logosite-logo

Advanced Search

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About AEM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions
PHYSIOLOGY AND BIOTECHNOLOGY

Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp

Patrick K. H. Lee, David R. Johnson, Victor F. Holmes, Jianzhong He, Lisa Alvarez-Cohen
Patrick K. H. Lee
1Department of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1170
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
David R. Johnson
1Department of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1170
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Victor F. Holmes
1Department of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1170
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Jianzhong He
1Department of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1170
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Lisa Alvarez-Cohen
1Department of Civil and Environmental Engineering, University of California, Berkeley, California 94720-1170
2Earth Sciences Division, Lawrence Berkeley National Laboratory, 1 Cyclotron Rd., Berkeley, California 94720
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
  • For correspondence: alvarez@ce.berkeley.edu
DOI: 10.1128/AEM.01070-06
  • Article
  • Figures & Data
  • Info & Metrics
  • PDF
Loading

Article Figures & Data

Figures

  • Tables
  • FIG. 1.
    • Open in new tab
    • Download powerpoint
    FIG. 1.

    tceA gene expression profile of a pure culture of Dehalococcoides ethenogenes 195 in the presence and absence of TCE over 24 h. Measurements of tceA transcripts per tceA gene at each time point are normalized to the value at time zero to obtain the relative changes. Data are calculated from averages of triplicate qPCRs and RT-qPCRs, and error bars are smaller than the box symbol.

  • FIG. 2.
    • Open in new tab
    • Download powerpoint
    FIG. 2.

    Reductive dechlorination of chlorinated ethenes (solid lines) and expression profile of the tceA and vcrA genes (dashed lines) over a feeding cycle for ANAS. Expression measurements are calculated from averages of triplicate qPCRs and RT-qPCRs, and error bars represent 1 standard deviation.

  • FIG. 3.
    • Open in new tab
    • Download powerpoint
    FIG. 3.

    Decay profile of tceA transcripts when chlorinated ethenes were stripped from the culture after 24 h of active dechlorination.

  • FIG. 4.
    • Open in new tab
    • Download powerpoint
    FIG. 4.

    (A) tceA gene expression profile with and without the influence of chloramphenicol. (B) Initial dechlorination rate of TCE in the presence of chloramphenicol after the establishment of different transcript levels in five respective cultures. Rate measurements are normalized to the tceA gene copy number. The error bars for the rate measurement represent the 95% confidence interval of the slope of TCE dechlorination over 10 h. (C) Dechlorination activity of the ANAS enrichment culture over three consecutive days as represented by the rate of production of the TCE daughter products cDCE and VC every 24 h. Error bars represent the 95% confidence interval. The inset graph shows tceA gene expression during the 3 days of active dechlorination.

Tables

  • Figures
  • TABLE 1.

    Dechlorination activity

    No. of days without chlorinated ethenesMass amt (μmol) ofa:
    TCE dechlorinatedVC produced
    03.00.7
    42.10.3
    91.70.2
    151.50
    421.00
    • ↵ a Data represent mass amounts of TCE dechlorinated and VC produced in ANAS enrichment culture that had been starved of chlorinated ethenes for various durations. Data were measured after 14 h. cDCE was produced during each day of sampling but was not included in this table.

PreviousNext
Back to top
Download PDF
Citation Tools
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp
Patrick K. H. Lee, David R. Johnson, Victor F. Holmes, Jianzhong He, Lisa Alvarez-Cohen
Applied and Environmental Microbiology Sep 2006, 72 (9) 6161-6168; DOI: 10.1128/AEM.01070-06

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Print

Alerts
Sign In to Email Alerts with your Email Address
Email

Thank you for sharing this Applied and Environmental Microbiology article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp
(Your Name) has forwarded a page to you from Applied and Environmental Microbiology
(Your Name) thought you would be interested in this article in Applied and Environmental Microbiology.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp
Patrick K. H. Lee, David R. Johnson, Victor F. Holmes, Jianzhong He, Lisa Alvarez-Cohen
Applied and Environmental Microbiology Sep 2006, 72 (9) 6161-6168; DOI: 10.1128/AEM.01070-06
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
  • Top
  • Article
    • ABSTRACT
    • MATERIALS AND METHODS
    • RESULTS
    • DISCUSSION
    • ACKNOWLEDGMENTS
    • FOOTNOTES
    • REFERENCES
  • Figures & Data
  • Info & Metrics
  • PDF

KEYWORDS

Chloroflexi
Genes, Bacterial
Oxidoreductases

Related Articles

Cited By...

About

  • About AEM
  • Editor in Chief
  • Editorial Board
  • Policies
  • For Reviewers
  • For the Media
  • For Librarians
  • For Advertisers
  • Alerts
  • RSS
  • FAQ
  • Permissions
  • Journal Announcements

Authors

  • ASM Author Center
  • Submit a Manuscript
  • Article Types
  • Ethics
  • Contact Us

Follow #AppEnvMicro

@ASMicrobiology

       

ASM Journals

ASM journals are the most prominent publications in the field, delivering up-to-date and authoritative coverage of both basic and clinical microbiology.

About ASM | Contact Us | Press Room

 

ASM is a member of

Scientific Society Publisher Alliance

 

American Society for Microbiology
1752 N St. NW
Washington, DC 20036
Phone: (202) 737-3600

Copyright © 2021 American Society for Microbiology | Privacy Policy | Website feedback

 

Print ISSN: 0099-2240; Online ISSN: 1098-5336