Applied and Environmental Microbiology: 73 (16)

August 15, 2007; Volume 73,Issue 16

Plant Microbiology

Plant Microbiology
Putative Porin of Bradyrhizobium sp. (Lupinus) Bacteroids Induced by Glyphosate
Nuria de María, Ángeles Guevara, M. Teresa Serra, Isabel García-Luque, Alfonso González-Sama, Mario García de Lacoba, M. Rosario de Felipe, Mercedes Fernández-Pascual
Plant Microbiology
The Tomato Rhizosphere, an Environment Rich in Nitrogen-Fixing Burkholderia Species with Capabilities of Interest for Agriculture and Bioremediation
Jesús Caballero-Mellado, Janette Onofre-Lemus, Paulina Estrada-de los Santos, Lourdes Martínez-Aguilar

Food Microbiology

Food Microbiology
Effectiveness of Standard UV Depuration at Inactivating Cryptosporidium parvum Recovered from Spiked Pacific Oysters (Crassostrea gigas)
O. Sunnotel, W. J. Snelling, N. McDonough, L. Browne, J. E. Moore, J. S. G. Dooley, C. J. Lowery
Food Microbiology
Use of Multilocus Sequence Typing To Investigate the Association between the Presence of Campylobacter spp. in Broiler Drinking Water and Campylobacter Colonization in Broilers
I. D. Ogden, M. MacRae, M. Johnston, N. J. C. Strachan, A. J. Cody, K. E. Dingle, D. G. Newell
Food Microbiology
Microplate Fluorescence Assay for Measurement of the Ability of Strains of Listeria monocytogenes from Meat and Meat-Processing Plants To Adhere to Abiotic Surfaces
Rachel Gamble, Peter M. Muriana

Physiology and Biotechnology

PHYSIOLOGY AND BIOTECHNOLOGY
Acetamide Selection of Kluyveromyces lactis Cells Transformed with an Integrative Vector Leads to High-Frequency Formation of Multicopy Strains
Jeremiah D. Read, Paul A. Colussi, Mehul B. Ganatra, Christopher H. Taron
PHYSIOLOGY AND BIOTECHNOLOGY
Essential Role of Cytochrome bd-Related Oxidase in Cyanide Resistance of Pseudomonas pseudoalcaligenes CECT5344
Alberto Quesada, M. Isabel Guijo, Faustino Merchán, Blas Blázquez, M. Isabel Igeño, Rafael Blasco
PHYSIOLOGY AND BIOTECHNOLOGY
Metabolic Engineering of Bacillus subtilis for Ethanol Production: Lactate Dehydrogenase Plays a Key Role in Fermentative Metabolism
Susana Romero, Enrique Merino, Francisco Bolívar, Guillermo Gosset, Alfredo Martinez
PHYSIOLOGY AND BIOTECHNOLOGY
Glutathione Protects Lactococcus lactis against Acid Stress
Juan Zhang, Rui-Yan Fu, Jeroen Hugenholtz, Yin Li, Jian Chen
PHYSIOLOGY AND BIOTECHNOLOGY
Effects of Intranasal Administration of a Leptin-Secreting Lactococcus lactis Recombinant on Food Intake, Body Weight, and Immune Response of Mice
Luis G. Bermúdez-Humarán, Sébastien Nouaille, Vladimir Zilberfarb, Gérard Corthier, Alexandra Gruss, Philippe Langella, Tarik Issad
PHYSIOLOGY AND BIOTECHNOLOGY
Lack of Electricity Production by Pelobacter carbinolicus Indicates that the Capacity for Fe(III) Oxide Reduction Does Not Necessarily Confer Electron Transfer Ability to Fuel Cell Anodes
Hanno Richter, Martin Lanthier, Kelly P. Nevin, Derek R. Lovley
PHYSIOLOGY AND BIOTECHNOLOGY
Saccharomyces cerevisiae Signature Genes for Predicting Nitrogen Deficiency during Alcoholic Fermentation
A. Mendes-Ferreira, M. del Olmo, J. García-Martínez, E. Jiménez-Martí, C. Leão, A. Mendes-Faia, J. E. Pérez-Ortín
PHYSIOLOGY AND BIOTECHNOLOGY
New Enzymatic Method of Chiral Amino Acid Synthesis by Dynamic Kinetic Resolution of Amino Acid Amides: Use of Stereoselective Amino Acid Amidases in the Presence of α-Amino-ε-Caprolactam Racemase
Shigenori Yamaguchi, Hidenobu Komeda, Yasuhisa Asano

Mycology

Mycology
Identification and In Vivo Functional Analysis by Gene Disruption of ctnA, an Activator Gene Involved in Citrinin Biosynthesis in Monascus purpureus
Takeo Shimizu, Hiroshi Kinoshita, Takuya Nihira
Mycology
At Least Two Origins of Fungicide Resistance in Grapevine Downy Mildew Populations
Wei-Jen Chen, François Delmotte, Sylvie Richard Cervera, Lisette Douence, Charles Greif, Marie-France Corio-Costet
Mycology
Identification of Internal Transcribed Spacer Sequence Motifs in Truffles: a First Step toward Their DNA Bar Coding
Khalid El Karkouri, Claude Murat, Elisa Zampieri, Paola Bonfante

Public Health Microbiology

Public Health Microbiology
Attachment of Enteric Viruses to Bottles
S. Butot, T. Putallaz, C. Croquet, G. Lamothe, R. Meyer, H. Joosten, G. Sánchez
Public Health Microbiology
Development of a Swine-Specific Fecal Pollution Marker Based on Host Differences in Methanogen mcrA Genes
Jennifer A. Ufnar, David F. Ufnar, Shiao Y. Wang, R. D. Ellender
Public Health Microbiology
Effects of Different Animal Waste Treatment Technologies on Detection and Viability of Porcine Enteric Viruses
Verónica P. Costantini, Ana C. Azevedo, Xin Li, Mike C. Williams, Frederick C. Michel, Linda J. Saif
Public Health Microbiology
Legionella pneumophila in Cooling Towers: Fluctuations in Counts, Determination of Genetic Variability by Pulsed-Field Gel Electrophoresis (PFGE), and Persistence of PFGE Patterns
Sonia Ragull, Marian Garcia-Nuñez, Maria Luisa Pedro-Botet, Nieves Sopena, Maria Esteve, Rafael Montenegro, Miquel Sabrià

Microbial Ecology

Microbial Ecology
Use of Propidium Monoazide for Live/Dead Distinction in Microbial Ecology
Andreas Nocker, Priscilla Sossa-Fernandez, Mark D. Burr, Anne K. Camper
Microbial Ecology
Effect of Afforestation and Reforestation of Pastures on the Activity and Population Dynamics of Methanotrophic Bacteria
Brajesh K. Singh, Kevin R. Tate, Gokul Kolipaka, Carolyn B. Hedley, Catriona A. Macdonald, Peter Millard, J. Colin Murrell
Microbial Ecology
Molecular Detection and Ecological Significance of the Cyanobacterial Genera Geitlerinema and Leptolyngbya in Black Band Disease of Corals
Jamie L. Myers, Raju Sekar, Laurie L. Richardson
Microbial Ecology
High Rates of Sulfate Reduction in a Low-Sulfate Hot Spring Microbial Mat Are Driven by a Low Level of Diversity of Sulfate-Respiring Microorganisms
Jesse G. Dillon, Susan Fishbain, Scott R. Miller, Brad M. Bebout, Kirsten S. Habicht, Samuel M. Webb, David A. Stahl
Microbial Ecology
Virus Attachment to Transparent Exopolymeric Particles along Trophic Gradients in the Southwestern Lagoon of New Caledonia
Xavier Mari, Marie-Emmanuelle Kerros, Markus G. Weinbauer
Microbial Ecology
Diversity of Nitrite Reductase Genes in “Candidatus Accumulibacter phosphatis”-Dominated Cultures Enriched by Flow-Cytometric Sorting
Ryuki Miyauchi, Kazuma Oki, Yoshiteru Aoi, Satoshi Tsuneda

Geomicrobiology

Geomicrobiology
Effects of Imposed Salinity Gradients on Dissimilatory Arsenate Reduction, Sulfate Reduction, and Other Microbial Processes in Sediments from Two California Soda Lakes
T. R. Kulp, S. Han, C. W. Saltikov, B. D. Lanoil, K. Zargar, R. S. Oremland

Genetics and Molecular Biology

Genetics and Molecular Biology
Use of a Dominant rpsL Allele Conferring Streptomycin Dependence for Positive and Negative Selection in Thermus thermophilus
Emilio Blas-Galindo, Felipe Cava, Eduardo López-Viñas, Jesús Mendieta, José Berenguer
Genetics and Molecular Biology
Development of Innovative Pediocin PA-1 by DNA Shuffling among Class IIa Bacteriocins
Tatsuya Tominaga, Yoshinori Hatakeyama
Genetics and Molecular Biology
Production and Secretion Stress Caused by Overexpression of Heterologous α-Amylase Leads to Inhibition of Sporulation and a Prolonged Motile Phase in Bacillus subtilis
Andrzej T. Lulko, Jan-Willem Veening, Girbe Buist, Wiep Klaas Smits, Evert Jan Blom, Aaron C. Beekman, Sierd Bron, Oscar P. Kuipers

Enzymology and Protein Engineering

Enzymology and Protein Engineering
Molecular and Biochemical Characterization of 3-Hydroxybenzoate 6-Hydroxylase from Polaromonas naphthalenivorans CJ2
Minjeong Park, Yeji Jeon, Ho Hee Jang, Hyun-Su Ro, Woojun Park, Eugene L. Madsen, Che Ok Jeon
Enzymology and Protein Engineering
Recombinant Expression and Characterization of a Reducing-End Xylose-Releasing Exo-Oligoxylanase from Bifidobacterium adolescentis
Stijn Lagaert, Steven Van Campenhout, Annick Pollet, Tine M. Bourgois, Jan A. Delcour, Christophe M. Courtin, Guido Volckaert
Enzymology and Protein Engineering
Newly Discovered Penicillin Acylase Activity of Aculeacin A Acylase from Actinoplanes utahensis
Jesús Torres-Bacete, Daniel Hormigo, Maribel Stuart, Miguel Arroyo, Pedro Torres, María P. Castillón, Carmen Acebal, José L. García, Isabel de la Mata

Environmental Microbiology

Environmental Microbiology
Real-Time Reverse Transcription-PCR for Transcriptional Expression Analysis of Virulence and Housekeeping Genes in Viable but Nonculturable Vibrio parahaemolyticus after Recovery of Culturability
François Coutard, Solen Lozach, Monique Pommepuy, Dominique Hervio-Heath
Environmental Microbiology
Impact of Alginate Conditioning Film on Deposition Kinetics of Motile and Nonmotile Pseudomonas aeruginosa Strains
Alexis J. de Kerchove, Menachem Elimelech

Invertebrate Microbiology

Invertebrate Microbiology
Differences between Bacterial Communities in the Gut of a Soil-Feeding Termite (Cubitermes niokoloensis) and Its Mounds
Saliou Fall, Jérôme Hamelin, Farma Ndiaye, Komi Assigbetse, Michel Aragno, Jean Luc Chotte, Alain Brauman
Invertebrate Microbiology
New Insights into the Colonization and Release Processes of Xenorhabdus nematophila and the Morphology and Ultrastructure of the Bacterial Receptacle of Its Nematode Host, Steinernema carpocapsae
Holly Snyder, S. Patricia Stock, Sam-Kyu Kim, Yolanda Flores-Lara, Steven Forst

Methods

Methods
Evaluation of Culture Methods To Identify Bovine Feces with High Concentrations of Escherichia coli O157
J. Trent Fox, David G. Renter, Michael W. Sanderson, Daniel U. Thomson, Kelly F. Lechtenberg, T. G. Nagaraja
Methods
Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Qiong Wang, George M. Garrity, James M. Tiedje, James R. Cole
Methods
Interpreting Ecological Diversity Indices Applied to Terminal Restriction Fragment Length Polymorphism Data: Insights from Simulated Microbial Communities
Christopher B. Blackwood, Deborah Hudleston, Donald R. Zak, Jeffrey S. Buyer

Errata

Errata
Diversity and Mechanisms of Alkali Tolerance in Lactobacilli
Yuki Sawatari, Atsushi Yokota
Errata
Faster, Simpler, More-Specific Methods for Improved Molecular Detection of Phytophthora ramorum in the Field
J. A. Tomlinson, I. Barker, N. Boonham
Errata
Salinity Constraints on Subsurface Archaeal Diversity and Methanogenesis in Sedimentary Rock Rich in Organic Matter
Patricia J. Waldron, Steven T. Petsch, Anna M. Martini, Klaus Nüsslein

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Table of Contents

Plant Microbiology

Food Microbiology

Physiology and Biotechnology

Mycology

Public Health Microbiology

Microbial Ecology

Geomicrobiology

Genetics and Molecular Biology

Enzymology and Protein Engineering

Environmental Microbiology

Invertebrate Microbiology

Methods

Errata

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