ABSTRACT
The microbial ecology of “soppressata of Vallo di Diano,” a traditional dry fermented sausage from southern Italy, was studied by using both culture-dependent and culture-independent approaches. The ripened fermented sausages were characterized by high microbial loads of both staphylococci and lactobacilli. Using PCR-denaturing gradient gel electrophoresis (PCR-DGGE) targeting the variable V3 and V1 regions of the 16S rRNA gene and direct DNA sequencing, it was possible to identify Staphylococcus xylosus, S. succinus, and S. equorum among the staphylococci and Lactobacillus sakei and L. curvatus within the lactobacilli. Moreover, Debaryomyces hansenii was the main yeast species found by targeting the yeast 26S rRNA gene by PCR-DGGE. Selected strains of S. xylosus, L. sakei, and L. curvatus were characterized for their technological properties in the ripening conditions of the fermented sausages so as to select an autochthonous starter formulation. The selection included the determination of nitrate reductase, lipolytic, and antioxidant activity and proteolysis with myofibrillar and sarcoplasmic protein fractions. Such properties were evaluated in both in vitro and in situ assays; the latter were performed by using each strain as a starter in the laboratory-scale manufacture of soppressata of Vallo di Diano and by monitoring the microbiological and chemical changes at the end of ripening. The results show differences between the in vitro and in situ selection results and indicate that in situ evaluation of the technological performance of specific strains is better suited to selecting autochthonous starter cultures for fermented-meat products than in vitro evaluation.
Italy has a long history in the production of traditional fermented sausages (59), and almost every Italian region offers one or more of these much-appreciated products, some of which have been awarded Protected Designation of Origin and Protected Geographical Indication labels (http://europa.eu.int/comm/agriculture/qual/en/pgi_03en.htm ). In the Campania region (southern Italy), there are many small producers making dry fermented-meat products called “soppressata” which, like most fermented meats, are the result of biochemical, microbiological, physical, and sensorial changes occurring in a meat mixture during ripening in defined conditions of temperature and relative humidity (RH). These products, which are prepared without using selected starter cultures to ensure their characteristic organoleptic properties, are not usually produced on a large-scale basis but, rather, are sold on local markets as “traditional products” (8).
According to conventional and molecular microbiological studies, the ripening process of fermented sausages is dominated by lactic acid bacteria (LAB), represented mainly by Lactobacillus sakei, L. curvatus, and L. plantarum and by coagulase-negative cocci (CNC) represented by the Staphylococcus and Kocuria genera (14, 18, 19, 26, 34, 44). In addition, depending on the product, other groups, such as molds, enterococci, and yeasts, may play a role. LAB and CNC are actively involved in the development of texture, color, and flavor and exert a positive effect on the hygienic properties of the product, inhibiting pathogenic or spoilage flora by acidification or by production of antimicrobials (2, 51, 55, 56).
The diversity of LAB and staphylococcal populations occurring in Italian fermented sausages was recently studied (6, 8, 29, 41, 53). The profiling of bacterial populations present in fermented meat can be useful to identify the species involved in the fermentative process and, eventually, to select specific strains to be employed in an autochthonous starter culture. The use of starter cultures is being increasingly required to guarantee safety and standardization of product properties, including consistent flavor and color and shorter ripening time (14).
The physiological and technological properties of the main groups of bacteria involved in the fermentation of dry cured-meat products (i.e., bacteriocin production, proteolysis, lipolysis, and nitrite and nitrate reductase and probiotic properties) have often been studied (2, 8, 9, 23, 24, 30, 31, 35, 36, 42, 43, 50, 51, 52, 55, 58). However, in most cases the selection and technological characterization of the cultures are based on assays performed in vitro, while more information could be gathered if the same properties were tested in a real meat fermentation system. The use of starter cultures that include strains isolated from local products is essential in the artisanal manufacture of traditional fermented products, since such strains are well adapted to the particular environment and specific manufacturing technology (26, 39). Therefore, appropriate starter cultures have to be selected according to the specific formulation of the batter and technology of fermentation since environmental factors interact to select a limited number of strains that are competitive enough to dominate the process (48). Environmental factors possibly affecting strain selection are wild microbial populations, ripening conditions, temperature, RH, pH, presence of NaCl, raw materials, and ingredients. In order to make the ideal starter culture for any particular technology and recipe, it is necessary to understand the function we seek and to have tools to monitor the efficacy of the culture (27).
The aims of this study were (i) to study, by culture-dependent and -independent molecular methods, the microbial ecology of the traditional soppressata of Vallo di Diano in order to understand the microbial species occurring in this kind of fermentation and (ii) to isolate and select suitable strains of LAB and staphylococci, by in vitro and in situ technological characterization, that could be used in autochthonous starter cultures in manufacturing the same sausages.
MATERIALS AND METHODS
Enumeration and isolation of bacteria.Ten samples of dry fermented sausages, labeled A to L (Table 1), were purchased from different local factories in Campania (southern Italy). The pH and water activity (aw) values for all of the samples were determined. Standard enumeration methods were used to determine the microbial populations at the end of ripening. Ten grams of each sample was transferred into a sterile Stomacher bag, diluted with 90 ml of Ringer solution (Oxoid), and treated with a Stomacher machine for 2 min. Serial decimal dilutions were made, and several microbial populations were targeted in duplicate as follows: (i) LAB on De Man, Rogosa, Sharpe (MRS) agar (Oxoid) incubated in anaerobic conditions at 30°C for 48 h, (ii) gram-positive CNC on mannitol salt agar (MSA; Oxoid) incubated at 30°C for 48 h, (iii) enterococci on Slanetz and Bartley medium (Oxoid) incubated at 37°C for 48 h, (iv) yeasts and molds on dichloran rose Bengal chloramphenicol (DRBC) agar base (Oxoid) supplemented with chloramphenicol selective supplement (Oxoid) incubated at 30°C for 72 h, (v) total enterobacteria on violet red bile glucose agar (Oxoid) incubated with a double layer at 30°C for 24 to 48 h, (vi) clostridia on tryptone-sulfite-neomycin agar (Sanofi Diagnostics Pasteur, Marnes, La Coquette, France) incubated in anaerobic conditions at 37°C for 72 h. Three to five colonies of LAB and staphylococci were randomly isolated from countable MRS and MSA plates, purified, and stored at −20°C in MRS and tryptone soy broth with 25% glycerol. Species-specific PCR assays performed by using two set of primers targeting xylulokinase (xylB) and 60-kDa heat shock protein genes (hsp60) of S. xylosus were used as previously reported (5) to identify the staphylococcal isolates belonging to the species S. xylosus. The isolated lactobacilli were selected for the absence of plasmid-mediated (tetracycline, erythromycin, oleandomycin, lincomycin, and clindamycin) antibiotic resistance according to the method of Charteris et al. (11) and for their capability to survive at low pH as previously described (42). Selected strains were identified by 16S rRNA gene sequencing as previously reported (4) (see Table 8). Both staphylococci and lactobacilli were also selected for their growth ability at pH 5.5 and at 14°C determined according to Casaburi et al. (9).
Fermented sausages analyzed in this study: microbial loads and pH and aw valuesa
Collection of bulk cells.In order to investigate the cultivable microbiota of the sausages, bulk cells (22) were collected from LAB, gram-positive CNC, enterococci, and yeast cells by using the whole content of the countable dilution plates used for the enumeration of these microbial groups. In particular, for each microbial group, all colonies present on the specific growth medium were resuspended in 5 ml of tryptone soy broth (Oxoid), added to 20% glycerol, and stored at −20°C prior to further analysis.
DNA extraction.Ten grams of each soppressata sample was diluted with 90 ml of Ringer solution (Oxoid) and treated with a Stomacher machine for 2 min. Two milliliters of the solution obtained was centrifuged at 17,000 × g for 10 min at room temperature and washed once with 200 μl of TE (10 mM Tris-HCl, 1 mM EDTA, pH 8.0). After washing, the solution was again centrifuged at 17,000 × g for 10 min at room temperature. The pellet was suspended in 100 μl of TE and used for DNA extraction with a Wizard DNA purification kit (Promega, Madison, WI) as previously described (22). After DNA precipitation with isopropanol (0.7 volume), the resulting pellet was washed with 70% ethanol. It was then dried and resuspended in 50 μl of DNA rehydration solution by incubation at 60°C for 45 min. Finally, 5 μl of RNase (10 mg/ml) was added and the solution was incubated at 37°C for 30 min. The DNA extracted was stored at −20°C. For DNA extraction from bulk cells, 500 μl of the bulk mixture was centrifuged at 17,000 × g for 10 min at room temperature. The pellet was suspended in 100 μl of TE and used for DNA extraction as described above. Finally, 500 μl of yeast bulk cells was centrifuged at 17,000 × g for 10 min at room temperature. The pellet was used for DNA extraction with InstaGene matrix (Bio-Rad Laboratories, Hercules, CA) by following the conditions described by the supplier.
PCR-denaturing gradient gel electrophoresis (DGGE) analysis.The primers V3f and V3r spanning the V3 region (positions 340 to 356 and 533 to 517, respectively) of the 16S rRNA gene (38) were used. A GC clamp was added to the forward primer according to the method of Muyzer et al. (38). Amplification was performed in a programmable heating incubator (MJ Research Inc., Madison, WI). Each mixture (final volume, 50 μl) contained 1 μl of template DNA (about 25 ng), each primer at a concentration of 0.2 μM, each deoxynucleoside triphosphate at a concentration of 0.25 mM, 2.5 mM MgCl2, 5 μl of 10× PCR buffer (Invitrogen), and 2.5 U of Taq polymerase (Invitrogen). Template DNA was denatured at 94°C for 5 min, and a touchdown PCR was performed (38). The primers NL1 and LS2 (12) spanning the 5′-end region (positions 266 to 285 on the S. cerevisiae 26S rRNA gene (GenBank accession number M19229) were used to amplify DNA extracted from the yeast bulks. A GC clamp was added to primer NL1 (38). For the amplification a mixture (final volume, 50 μl) was prepared as described above. Reactions were run for 30 cycles: denaturation was at 95°C for 60 s, annealing was at 52°C for 45 s, and extension was at 72°C for 60 s. An initial denaturation at 95°C for 5 min and a final extension at 72°C for 7 min were used. The primers P1f and P2r spanning the V1 region (positions 41 to 60 and 130 to 111, respectively) of the 16S rRNA gene (32) were used to amplify DNA extracted from bulk cells collected from MRS agar. A GC clamp was added to the forward primer according to the method of Muyzer et al. (38). Each mixture (final volume, 50 μl) was prepared as described above. Template DNA was denatured at 94°C for 5 min, and a touchdown PCR was performed (38). Aliquots (3 μl) of all the PCR products were routinely checked on 2% (wt/vol) agarose gels.
PCR products were analyzed by DGGE by using a Dcode apparatus (Bio-Rad). Samples were applied to 8% (wt/vol) polyacrylamide gels in 1× Tris-acetate-EDTA buffer. Parallel electrophoresis experiments were performed at 60°C by using gels containing a 20%:50% and a 30%:50% urea-formamide denaturing gradient (100% corresponded to 7 M urea and 40% [wt/vol] formamide) for the separation of V3 (or D1) and V1 amplicons, respectively. The gels were analyzed by electrophoresis for 4 h at 200 V, stained with ethidium bromide for 5 min, and rinsed for 10 min in distilled water.
Sequencing of DGGE bands.Small pieces of selected DGGE fragments were punched from the gel with sterile pipette tips. The pieces were transferred into 20 μl of sterile water and incubated overnight at 4°C. Two milliliters of the eluted DNA was used for reamplification, and the PCR products were checked by DGGE; DNA amplified from the respective DGGE profile was used as a control. Only products that migrated as a single band and at the same position as the control were purified by using a QIAquick PCR purification kit (QIAGEN, Milan, Italy) and sequenced by use of primer V3r, P2r, or NL1. The DNA sequences were determined by the dideoxy chain termination method by using a DNA sequencing kit (Perkin-Elmer Cetus, Emeryville, CA) according to the manufacturer's instructions. Research to identify DNA similarity was performed using the GenBank and EMBL databases with the BLAST program to determine the closest known relatives of the partial 16S rRNA gene sequences obtained (1).
In vitro technological characterization of Staphylococcus and Lactobacillus strains.The strains belonging to the S. xylosus species were studied to evaluate catalase, nitrate reductase, proteolytic, lipolytic, and antioxidant activities as described in a previous work (9) in order to determine their potential for use as a starter for fermented sausage production.
Briefly, the nitrate reductase activity was evaluated spectrophotometrically according to Casaburi et al. (9) and lipolytic activity was assayed on pork fat (using concentrations of 108 CFU ml−1 of each culture and incubation at 14°C for 14 days) by titration and expressed as a percentage of oleic acid as previously described (36). In order to determine the proteolytic activity, 1 ml of cell suspension (108 CFU ml−1) in phosphate-buffered saline (Oxoid) was inoculated in 10 ml of sterile-meat sarcoplasmic (1.77 mg ml−1) or myofibrillar (0.12 mg ml−1) extracts and incubated at 14°C for 14 days. At time zero and after 14 days the cultures were analyzed by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) as described by Laemmli (33) on 12% polyacrylamide gels by use of a Mini-PROTEAN III cell (Bio-Rad) as electrophoresis equipment. The electrophoretograms were run with Precision Plus Protein standards (Bio-Rad) of known molecular weight, and the gels were subsequently stained for 1 h in a 0.1% (wt/vol) solution of brilliant blue R in methanol:acetic acid:water (40:10:50) and then destained for 2 h in the staining solution without brilliant blue. Sarcoplasmic and myofibrillar extracts were run as a control in the gel. Prior to loading, the myofibrillar extracts were first dialyzed (3500 MWCO unit with Spectra/Por 3 tubing; Spectrum Medical Industries Inc., Los Angeles, CA) in distilled water overnight, lyophilized, and then loaded at a concentration of 1.77 mg ml−1 in sample buffer. The antioxidant properties of the strains were evaluated by determining the amount of malondialdehyde (MDA) produced in 10 ml of broth containing 1% tryptone, 0.5% yeast extract, 3% NaCl, and 4% (g/vol) of pork fat at pH 7.0 inoculated with each strain at a concentration of 108 CFU ml−1 after incubation for 14 days at 14°C with shaking. The MDA concentration was determined by using the thiobarbituric acid test described by Bolumar et al. (7). Briefly, 10 ml of broth was mixed with 10 mg of butyl hydroxide toluene and 20 ml of 5% trichloroacetic acid. The mixture was homogenized for 20 s and centrifuged at 9,000 × g for 10 min at 4°C, and the supernatant was filtered through Whatman paper. Four milliliters of thiobarbituric acid (0.02 M) was added to 4 ml of filtrate and incubated at 100°C for 1 h, and the mixture was then centrifuged at 9,000 × g for 5 min at 4°C. The supernatants obtained were spectrophotometrically read at 532 nm (7); the results as expressed as milligrams of MDA per gram of pork fat. The acidifying activity of the Lactobacillus strains was evaluated by measuring growth (according to the optical density at 600 nm) and pH every 24 h during growth in meat broth (0.1% glucose, 3% NaCl, 0.3% meat extract, 0.5% peptone, 250 ppm KNO3, pH = 7.0) at 14°C for 14 days.
In situ technological characterization of Staphylococcus and Lactobacillus strains.The in situ characterization of the technological properties of the selected strains was performed by simulating laboratory-scale manufacture of soppressata of Vallo di Diano. A pork meat dough was prepared by mixing for 5 min the following ingredients: lean pork (76%), pork fat (4%), NaCl (2.8%), black pepper in grains (0.6%), white wine, and potassium nitrate (250 ppm). Aliquots (200 g) of dough were inoculated with cell suspensions of each Lactobacillus or Staphylococcus strain at a final concentration of 107 CFU g−1; the sausages were prepared in natural casings, dried at 18°C for 4 h at 86% RH, and then ripened for 14 days at 14°C and 68% RH. Every strain was assayed in duplicate tests; noninoculated sausages were prepared and ripened as a control. At time zero and after 14 days of ripening, sausage samples were taken for microbiological and chemical analyses. Microbial counts were performed on MRS agar under anaerobic conditions after 48 h at 30°C and for staphylococci on MSA after 48 h at 30°C. pH measurement was performed by using a Mettler-Toledo GmbH pH meter (model MP-120-B; Novate Milanese).
The nitrate reductase activity was determined spectrophotometrically according to the method of Baldini et al. (3). Briefly, nitrates and nitrites were extracted from meat and treated with Carrez reagents, and the colorimetric determination was performed at 540 nm after reduction of residual nitrates to nitrites on a cadmium sponge. The nitrate and nitrite content was expressed in milligrams per kilogram of meat. For the proteolytic activity analyses the sarcoplasmic and myofibrillar proteins were extracted according to the method described by Mauriello et al. (35) and the protein concentrations were determined using a Bio-Rad protein assay with bovine serum albumin as the standard. The extracts were diluted to a final concentration of 1.77 mg ml−1, and SDS-PAGE was performed as described above. For the lipolytic activity, the total lipid content of the samples was determined after they had been thawed and minced. The extraction was performed using 5 g of minced meat according to the method of Folch et al. (25). The lipid phase was resuspended in ethanol:ethyl ether (1:2) and titrated with an alcoholic NaOH solution (0.02 N). The results are expressed as a percentage of oleic acid as previously described (36). A lipolysis index was also calculated as the percentage of oleic acid/percentage of total lipids according to the method of Cattaneo et al. (10). The determination of MDA as a marker of oxidation was performed as described above by use of 5 g of sausages.
Statistical analysis.Statistical analyses were performed using SPSS 11.5 software for Windows (SPSS, Chicago, IL). The analysis of variance (Duncan test) was applied to determine differences in means. All the values represent the mean values obtained from three independent assays for each trait.
RESULTS
Enumeration of microorganisms and pH and aw measurements.The results obtained by the enumeration of microorganisms and determination of the pH and aw values for the soppressata samples are shown in Table 1. All the samples had a pH far higher than 5.5 and had low aw values. The LAB load was extremely heterogeneous, ranging from 7.4 × 106 (sample F) to 3.2 × 109 (sample B) CFU g−1. Staphylococcal loads ranged from 2.4 × 104 (sample D) to 3.4 × 107 (sample A) CFU g−1. Enterococcal loads ranged from 2.0 × 103 (sample D) to 1.5 × 107 (sample C) CFU g−1. For samples E and G, enterococcal loads did not reach 103 CFU g−1. The numbers of yeasts and molds did not differ greatly among all samples, with values ranging from 2.0 × 103 (sample D) to 7.2 × 104 (sample A) CFU g−1. The number of Enterobacteriaceae was high only in sample C (Table 1). An absence of clostridia was observed for all the soppressata samples.
DGGE profiles and species identification.The total DNA extracted from each soppressata sample (A to L) was employed in PCR assays using the primers V3f and V3r to obtain 200-bp fragments of the V3 region of the 16S rRNA gene, and the fragments were analyzed by DGGE. The results obtained by this analysis are shown in Fig. 1; multiple bands could be detected in most of the samples. All the bands were excised from the gel and reamplified prior to sequencing. The results of the identification are presented in Table 2. Members of the genus Lactobacillus and the genus Staphylococcus were predominant in the samples analyzed. In particular, Lactobacillus spp. were found in samples B, E, G, H, I, and L. The species group L. sakei/curvatus/graminis was found in samples B, E, I, and L, while L. plantarum occurred in samples G and H (Table 2). Members of the genus Staphylococcus were found in five samples (A, B, C, D, and H). S. succinus was found in samples C and D, while S. equorum was found in sample B (Table 2). Enterococcus spp. were detected in samples C and L and members of the genus Carnobacterium in samples E and F. Finally, Tetragenococcus halophilus was identified in sample I.
DGGE profiles of the V3 region of the 16S rRNA gene obtained by PCR amplification of DNA extracted directly from the 10 soppressata samples A, B, C, D, E, F, G, H, I, and L. Identification of each band is presented in Table 2.
Sequence information for the DGGE bands obtained by analyzing the V3 region of the 16S rRNA gene of DNA extracted directly from soppressata samples
PCR-DGGE was also applied to PCR products from bulk cells collected from MRS agar, MSA, Slanetz and Bartley medium, and DRBC agar. Bulk cells were not identified when the bacterial load for a certain group was low or below the detection limit. DGGE profiles obtained by the analysis of the V3 region of the 16 rRNA gene of staphylococci from MSA are shown in Fig. 2; the closest relatives of the sequenced fragments are reported in Table 3. The species mainly detected in the eight bulk cells analyzed were S. xylosus, S. equorum, and S. succinus. Each species was present in five samples, and sample L was the only one containing all the three staphylococcal species. In particular, S. xylosus was found in samples A, B, C, I, and L; S. equorum in samples B, E, H, I, and L; and S. succinus in samples C, E, G, H, and L. DGGE profiles obtained by the analysis of the V3 region of the 16S rRNA gene of LAB are shown in Fig. 3; the closest relatives of the sequenced fragments are reported in Table 4.
DGGE profiles of the V3 region of the 16S rRNA gene obtained by PCR amplification of DNA extracted from bulk cells collected from MSA for soppressata samples A, B, C, E, G, H, I, and L. Identification of each band is reported in Table 3.
DGGE profiles of the V3 region of the 16S rRNA gene obtained by PCR amplification of DNA extracted from bulk cells collected from MRS for soppressata samples A, B, C, D, E, F, G, H, I, and L. Identification of each band is reported in Table 4.
Sequence information for the DGGE bands obtained by analyzing the V3 region of the 16S rRNA gene of the microbial bulk cells collected from MSA
Sequence information for the DGGE bands obtained by analyzing the V3 region of the 16S rRNA gene of the microbial bulk cells collected from MRS medium
Several bands of samples A, B, C, and D were identified as representing non-Lactobacillus species after sequencing. Almost all the detected bands belonging to the genus Lactobacillus could not be identified at the species level but were identified in groups of multiple species (Table 4). Therefore, to improve the study of the LAB population, the V1 region of the 16 rRNA gene was chosen for PCR-DGGE analysis of bulk cells from MRS agar (Fig. 4). The closest relatives of the sequenced fragments are reported in Table 5. The primer set used was suitable for obtaining good differentiation among Lactobacillus spp. without band comigration as already reported by Cocolin et al. (14). With the sole exception of sample A, species of Lactobacillus were found in all bulk cells collected from MRS agar. L. sakei was found in samples D, F, and H and L. curvatus in samples C and E, whereas both species were detected in samples B, G, L, and I (Fig. 4; Table 5). Sequence information for the DGGE bands obtained by analyzing the V3 region of the 16S rRNA gene of the microbial bulk cells collected from Slanetz and Bartley medium is reported in Table 6. The bands displayed in Fig. 5 were identified as representing Enterococcus faecalis (samples A, B, C, and D) and E. hirae (samples A and L). However, some fragments were identified as harboring Staphylococcus spp. (samples A, B, and H) or Lactobacillus spp. (sample L). Sequence information for the DGGE bands obtained by analyzing the 26S rRNA gene of the yeast communities from DRBC agar is reported in Table 7, and the corresponding DGGE profiles are shown in Fig. 6. One band was detected in all the samples analyzed and was identified as representing Debaryomyces hansenii. Candida zeylanoides was detected in samples B, C, and E, while Pichia guillermondii was detected only in sample H.
DGGE profiles of the V1 region of the 16S rRNA gene obtained by PCR amplification of DNA extracted from bulk cells collected from MRS for soppressata samples A, B, C, D, E, F, G, H, I, and L. Identification of each band is reported in Table 5.
DGGE profiles of the V3 region of the 16S rRNA gene obtained by PCR amplification of DNA extracted from bulk cells collected from Slanetz and Bartley medium for soppressata samples A, B, C, D, H, and L. Identification of each band is reported in Table 6.
DGGE profiles of 26S 16S rRNA gene region obtained by PCR amplification of DNA extracted from bulk cells collected from DRBC agar base for soppressata samples A, B, C, E, G, and H. Identification of each band is reported in Table 7.
Sequence information for the DGGE bands obtained by analyzing the V1 region of the 16S rRNA gene of the microbial bulk cells collected from MRS medium
Sequence information for the DGGE bands obtained by analyzing the V3 region of the 16S rRNA gene of the microbial bulk cells collected from Slanetz and Bartley medium
Sequence information for the DGGE bands obtained by analyzing the 26S rRNA gene of the yeast communities present in soppressata samples
In vitro characterization of Staphylococcus and Lactobacillus strains.The results of the lipolytic activity analyses are shown in Table 8. Strong lipolytic activity was observed for the staphylococci, while weak lipolysis was observed for the lactobacilli. Indeed, the oleic acid values were between 7.05% and 31.02% for the S. xylosus strains whereas they ranged from 2.82% to 4.94% for the lactobacilli (Table 8). Moreover, no significant antioxidant activity was observed in the strains characterized; only L. sakei IVL42 was able to produce 4.23 mg MDA per g of fat, a concentration which was lower than the concentration of MDA found in the control (Table 8).
In situ and in vitro technological performance of selected Staphylococcus and Lactobacillus strains evaluated after 14 days of ripening and incubation at 14°Ca
All the strains of S. xylosus tested in this study showed nitrate reductase activity when assayed in vitro; strains AVS5, IVS38, and IVS39 showed better activity than the others (results not shown).
The results of the analyses of proteolysis on sarcoplasmic proteins are shown in Fig. 7. Weak proteolytic activity was found for the lactobacilli except for the strain of L. sakei FVL26 that did not exhibit any activity on the sarcoplasmic proteins. The electrophoretic profiles showed digestion of the 14-kDa band for all the lactobacilli (Fig. 7A). The strongest proteolytic activity was shown by L. sakei IVL42 (Fig. 7A), L. sakei BVL6, and L. curvatus BVL7 and CVL12 (Fig. 7B), which showed a reduction in the 22.7- and 11.5-kDa bands and an increase in the 13-kDa band. The S. xylosus IVS39, LVS48, and IVS37 strains were able to hydrolyze the sarcoplasmic proteins after 14 days of incubation (Fig. 7C), showing a reduction in the 22.7-kDa band and digestion of the doublet of about 20 kDa. None of the staphylococci and lactobacilli showed proteolytic activity on the myofibrillar proteins in vitro, since the corresponding SDS-PAGE profiles were identical to that of the control (data not shown).
SDS-PAGE of sarcoplasmic protein hydrolysis by different strains of Lactobacillus and S. xylosus. M, Precision Plus Protein standard; C0, uninoculated control at time zero; C14, uninoculated control after 14 days of incubation; a to p, samples containing different strains after 14 days of incubation. (A) a, L. sakei FVL26; b, L. sakei HVL36; c, L. curvatus IVL41; d, L. sakei IVL42. (B) e, L. sakei BVL6; f, L. curvatus BVL7; g, L. curvatus CVL12; h, L. sakei DVL17. (C) i, S. xylosus LVS49; l, S. xylosus AVS3; m, S. xylosus LVS48; n, S. xylosus IVS39; o, S. xylosus IVS38; p, S. xylosus IVS37.
In growth and acidification assays, all the lactobacilli showed slow growth at 14°C in meat broth; the highest effect on pH was shown by strains L. curvatus BVL7 and CVL12 and L. sakei DVL17 and HVL36, with a decrease in pH between 2.14 and 2.4 units compared to the control.
In situ characterization of Staphylococcus and Lactobacillus strains.After 14 days of ripening of meat at 14°C, viable counts showed an increase in the loads of lactobacilli ranging between 0.5 and 0.7 log cycles and an increase in 1 log cycle when strain L. sakei FVL26 was tested. The loads of staphylococci increased by about 1 log cycle in most cases (Table 9). The pH did not decrease during the first days of ripening, while it reached values of 5.53, 5.59, and 5.60 after 14 days when the meat had been inoculated with L. curvatus IVL41, DVL17, and FVL26, respectively (Table 9). Overall, the decrease in pH was registered after the first week of ripening.
Viable counts of staphylococci and LAB and pH evolution during ripening of soppressata of Vallo di Diano used for in vivo technological characterization of selected strains of Staphylococcus and Lactobacillus
The results of lipolytic activity analyses showed very weak lipolysis during meat ripening, with percent oleic acid values higher for lactobacilli than for staphylococci (Table 8). The lipolysis index confirmed the presence of better lipolytic activity by lactobacilli; the greatest rise in the lipolytic index was registered for the sausages inoculated with S. xylosus LVS49 and L. sakei FVL26, which showed increases of 1.42 and 1.38%, respectively, compared to the control strain results (data not shown).
After the 14 days of ripening the MDA concentrations were always higher than that seen with the control in the sausages inoculated with any of the Lactobacillus strains except for L. sakei DVL17 (Table 8). On the other hand, six of the nine sausages inoculated with S. xylosus showed MDA concentrations lower than the control results, with the lowest concentrations shown by strains IVS37 and IVS39. The results of the assessment of activities in vitro and in situ were found to be significantly different for both lipolytic activity (P < 0.01) and MDA determinations (P = 0.029) (Table 8).
After 14 days of ripening, the SDS-PAGE profiles of the sarcoplasmic proteins showed a reduction in the intensity of the 43.3- and 34.7-kDa bands in all the sausages, both inoculated and control (Fig. 8). The strains of S. xylosus assayed in situ did not exhibit proteolytic activity on the sarcoplasmic proteins, showing SDS-PAGE profiles identical to the control profiles (Fig. 8). The lactobacilli caused hydrolysis of the 14-kDa band; moreover, strains of L. sakei BVL6 and L. curvatus BVL7 caused a disappearance of the 34.7-kDa band and a reduction in the intensity of the 43.3-kDa band. As shown in Fig. 9, none of the staphylococci or lactobacilli was able to hydrolyze myofibrillar proteins during ripening of the fermented sausages.
SDS-PAGE of sarcoplasmic proteins extracted from different sausages. M, Precision Plus Protein standard; C0, uninoculated sausages (control) at time zero; C14, uninoculated sausages (control) after 14 days of ripening; a to e, sausages inoculated with different strains after 14 days of ripening (a, S. xylosus IVS39; b, S. xylosus LVS48; c, L. sakei FVL26; d, L. sakei BVL6; e, L. curvatus BVL7).
SDS-PAGE of myofibrillar proteins extracted from different sausages. M, Precision Plus Protein standard; C0, uninoculated sausages (control) at time zero; C14, uninoculated sausages (control) after 14 days of ripening; a to e, sausages inoculated with different strains after 14 days of ripening (a, L. curvatus BVL7; b, L. sakei BVL6; c, L. sakei FVL26; d, S. xylosus IVS39; e, S. xylosus LVS48; f, L. sakei HVL36).
The S. xylosus LVS48 strain showed the strongest nitrate reductase activity in situ, causing a reduction in the nitrate concentration, but did not exhibit nitrite reductase activity (Table 8). S. xylosus strains AVS3, AVS4, AVS5, IVS37, and IVS38 showed both nitrate and nitrite reductase activities, while strain IVS38 showed the best nitrite reductase activity, reducing the nitrite concentration by 53%.
DISCUSSION
In this study we first determined the microbial ecology of the traditional soppressata of Vallo di Diano by using combined molecular and traditional tools and then isolated LAB and staphylococci from the sausage ecosystem in order to select strains adapted to the specific fermentation for autochthonous starter formulation. The study considered only 10 premium quality sausages that were collected in the specific area of production.
The viable counts of the different bacterial groups in the soppressata samples showed the principal role played by lactobacilli and staphylococci during ripening as widely acknowledged in the literature (14, 26, 48). These two populations showed the highest viable counts, although enterococci also reached high loads in some samples.
In this work microbial diversity was assessed by a PCR-DGGE approach (21) to identify the main populations involved in the fermentative process of the soppressata of Vallo di Diano. The principal PCR-DGGE protocol used in this work was based on analysis of the variable V3 region of the 16S rRNA gene and allowed good differentiation to be obtained between the mixed populations analyzed after DNA extraction directly from food samples and from bulk cells of staphylococci, enterococci, and yeasts. Analysis of the V3 region did not allow identification at species level in the study of the bulk cells of lactobacilli from MRS, and study of the V1 region was necessary to achieve this purpose, as already reported by other authors (14, 26). Bacterial identification at the species level, in fact, is not possible for all genera, especially when only partial 16S rRNA gene sequences are analyzed (54).
A strong presence of lactobacilli was found in the traditional fermented sausages analyzed in this study; the main species were L. sakei and L. curvatus. These were probably responsible for the physical and organoleptic characteristics of the sausages tested. Of the staphylococci, besides S. xylosus the presence of S. equorum and S. succinus suggests that the latter two species may play a role in the ripening process of traditional fermented-meat products, as already reported (44). The frequent occurrence of L. sakei and L. curvatus among the LAB and of S. xylosus among the cocci is in agreement with the study of other traditionally fermented sausages, whose microbial ecology was determined by both culture-dependent and culture-independent methods (13, 14, 16, 45, 46, 47).
The most frequently recurring yeast species found in bulk cells collected in this research was Debaryomyces hansenii. The dominance of this species during natural fermentation of Italian sausages was already highlighted in a recent research by Cocolin et al. (15). This microorganism has shown good potential for the hydrolysis of sarcoplasmic proteins and the generation of several polar and nonpolar peptides and free amino acids (49).
According to our results, it seems that the ripening process of artisanal “Soppressata del Vallo di Diano” is carried out by a limited number of species of lactobacilli and staphylococci that are able to better compete in the environmental conditions of production. As the microbial floras in many fermented sausages produced worldwide have been shown to be characterized by the same species, the differences between all the different products may be due to specific ingredients and manufacturing conditions as well as biotypes within each species that may differently contribute to ripening.
In the second part of this work the technological performance of selected staphylococci and lactobacilli was studied in vitro and in situ during ripening of fermented sausages of Vallo di Diano in order to investigate the suitability of autochthonous strains to act as starter for fermentation. Nitrate reductase activity is considered the principal technological feature for selecting staphylococci as a starter (57). Our in vitro results allowed nitrate reductase activity to be ascertained for all the staphylococci and showed agreement with the results of other studies (9, 17, 52). However, nitrate reductase activity performed in situ gave information that was more useful, allowing differentiation of the strains in their ability to reduce nitrates and/or nitrites during ripening of fermented sausages.
As pointed out above, none of the selected strains exhibited activity on myofibrillar proteins, in contrast with our previous results (35, 36), where several S. xylosus strains exhibited proteolytic activity on myofibrillar proteins even though the assays were then performed at 30°C and not at 14°C as in this case. Therefore, the absence of such proteolytic activity may have been the result of nonoptimal enzyme activity of our staphylococci at 14°C. In this study, several S. xylosus strains were able to hydrolyze sarcoplasmic proteins in a synthetic substrate, as already found in a previous study (35). However, the in situ assays did not confirm the results obtained in vitro: several S. xylosus strains exhibited no proteolytic activity on sarcoplasmic proteins during sausage fermentation, although such activity was shown in vitro. This could have been due to a lack of dominance of the staphylococci over the autochthonous microbial flora of the pork meat, as confirmed by the viable counts (Table 9). Our lactobacilli proved able to hydrolyze the sarcoplasmic proteins both in situ and in vitro, but the sarcoplasmic fractions digested were shown to be different in the two cases except for the degradation of the 14-kDa fraction (Fig. 7A; Fig. 8). In other studies, strains of L. curvatus and L. sakei were shown to be capable of hydrolyzing 97-, 45-, 37-, and 26-kDa sarcoplasmic fractions during incubation at 30°C in a sarcoplasmic extract (23, 24). This evidence points to the role of temperature for such enzymatic activity and corroborates the differences between proteolytic assays performed in situ and in vitro.
A discrepancy between the results of the in situ and in vitro assays was also noted in the determination of lipolytic activity. While the strains of S. xylosus showed strong lipolytic activity in vitro in agreement with other studies (28, 36, 37), they did not confirm their performance during ripening of the fermented sausages. This was also noted in a previous work in which S. xylosus strains selected for good lipolytic activity in vitro proved unable to release fatty acids when used as starters in the fermentation of sausages (8). Our lactobacilli showed no lipolytic activity either in situ or in vitro, although lipolytic strains of Lactobacillus were selected in other works (28, 40). However, the absence of lipolysis by lactobacilli in situ seen in this work is in agreement with other studies (20, 31) where LAB with lipolytic enzymes inactive in sausage-ripening conditions were described. When assays using synthetic media were performed, no antioxidant activity was shown by our strains. However, decreased MDA concentrations, indicating antioxidant activity, were detected after 14 days of ripening of the fermented sausages started with several staphylococci and L. sakei IVL42.
In conclusion, different results can be obtained when testing technological performance in vitro and in situ, suggesting that the most suitable conditions need to be determined in advance for better selection of a starter mixture. Our results obtained by inoculating the strains directly into Vallo di Diano sausages showed that the background microbial population and the food matrix (raw materials, endogenous enzymes, etc.) chosen could affect the technological activities of the selected strains. Therefore, the results indicate that the most reliable selection is achieved by testing the strains in the real meat system, where most of the ripening conditions are simulated. On the basis of their technological performance during the ripening of the fermented sausages, we consider S. xylosus AVS5 and L. sakei DVL17 to be the most suitable strains for use as the autochthonous starter in the manufacture of the specific product considered in this study. Real manufacture of Vallo di Diano fermented sausages is in progress using this combination of strains as the starter.
ACKNOWLEDGMENTS
This study was supported by the Ministry of University, Rome, Italy (action PRIN 2004).
FOOTNOTES
- Received 14 May 2007.
- Accepted 26 June 2007.
- Copyright © 2007 American Society for Microbiology