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Table of Contents

June 15, 2010; Volume 76,Issue 12

Environmental Microbiology

  • Environmental Microbiology
    TaqMan Real-Time PCR Assays To Assess Arbuscular Mycorrhizal Responses to Field Manipulation of Grassland Biodiversity: Effects of Soil Characteristics, Plant Species Richness, and Functional Traits
    Stephan König, Tesfaye Wubet, Carsten F. Dormann, Stefan Hempel, Carsten Renker, François Buscot
  • Environmental Microbiology
    Analysis of the Fine-Scale Population Structure of “Candidatus Accumulibacter phosphatis” in Enhanced Biological Phosphorus Removal Sludge, Using Fluorescence In Situ Hybridization and Flow Cytometric Sorting
    Jeong Myeong Kim, Hyo Jung Lee, Sun Young Kim, Jae Jun Song, Woojun Park, Che Ok Jeon

Microbial Ecology

  • Microbial Ecology
    Characterization of Variation in Rumen Methanogenic Communities under Different Dietary and Host Feed Efficiency Conditions, as Determined by PCR-Denaturing Gradient Gel Electrophoresis Analysis
    Mi Zhou, Emma Hernandez-Sanabria, Le Luo Guan
  • Microbial Ecology
    Diversity of 16S rRNA Genes within Individual Prokaryotic Genomes
    Anna Y. Pei, William E. Oberdorf, Carlos W. Nossa, Ankush Agarwal, Pooja Chokshi, Erika A. Gerz, Zhida Jin, Peng Lee, Liying Yang, Michael Poles, Stuart M. Brown, Steven Sotero, Todd DeSantis, Eoin Brodie, Karen Nelson, Zhiheng Pei
  • Microbial Ecology
    Diversity of Oligotrichia and Choreotrichia Ciliates in Coastal Marine Sediments and in Overlying Plankton
    Mary Doherty, Maiko Tamura, Jan A. C. Vriezen, George B. McManus, Laura A. Katz
  • Microbial Ecology
    Low Pore Connectivity Increases Bacterial Diversity in Soil
    Jennifer K. Carson, Vanesa Gonzalez-Quiñones, Daniel V. Murphy, Christoph Hinz, Jeremy A. Shaw, Deirdre B. Gleeson

Enzymology and Protein Engineering

  • Enzymology and Protein Engineering
    Contribution of a Xylan-Binding Module to the Degradation of a Complex Cellulosic Substrate by Designer Cellulosomes
    Sarah Moraïs, Yoav Barak, Jonathan Caspi, Yitzhak Hadar, Raphael Lamed, Yuval Shoham, David B. Wilson, Edward A. Bayer
  • Enzymology and Protein Engineering
    Purification and Characterization of OmcZ, an Outer-Surface, Octaheme c-Type Cytochrome Essential for Optimal Current Production by Geobacter sulfurreducens
    Kengo Inoue, Xinlei Qian, Leonor Morgado, Byoung-Chan Kim, Tünde Mester, Mounir Izallalen, Carlos A. Salgueiro, Derek R. Lovley
  • Enzymology and Protein Engineering
    The Aminolysis Reaction of Streptomyces S9 Aminopeptidase Promotes the Synthesis of Diverse Prolyl Dipeptides
    Jiro Arima, Masazumi Morimoto, Hirokazu Usuki, Nobuhiro Mori, Tadashi Hatanaka

Methods

  • Methods
    Development of a Chip Assay and Quantitative PCR for Detecting Microcystin Synthetase E Gene Expression
    Hanna Sipari, Anne Rantala-Ylinen, Jouni Jokela, Ilona Oksanen, Kaarina Sivonen
  • Methods
    Comparison of Normalization Methods for Construction of Large, Multiplex Amplicon Pools for Next-Generation Sequencing
    J. Kirk Harris, Jason W. Sahl, Todd A. Castoe, Brandie D. Wagner, David D. Pollock, John R. Spear
  • Methods
    Multiplex Identification of Microbes
    Richard W. Hyman, Robert P. St.Onge, Edward A. Allen, Molly Miranda, Ana Maria Aparicio, Marilyn Fukushima, Ronald W. Davis
  • Methods
    Bioluminescence Imaging of Clavibacter michiganensis subsp. michiganensis Infection of Tomato Seeds and Plants
    Xiulan Xu, Sally A. Miller, Fulya Baysal-Gurel, Karl-Heinz Gartemann, Rudolf Eichenlaub, Gireesh Rajashekara
  • Methods
    Application of Paramagnetically Tagged Molecules for Magnetic Resonance Imaging of Biofilm Mass Transport Processes
    B. Ramanan, W. M. Holmes, W. T. Sloan, V. R. Phoenix
  • Methods
    Identification and Typing of Lactococcus lactis by Matrix-Assisted Laser Desorption Ionization-Time of Flight Mass Spectrometry
    Kana Tanigawa, Hiroaki Kawabata, Koichi Watanabe

Genetics and Molecular Biology

  • Genetics and Molecular Biology
    Iron-Dependent Remodeling of Fungal Metabolic Pathways Associated with Ferrichrome Biosynthesis
    Alexandre Mercier, Simon Labbé
  • Genetics and Molecular Biology
    Abolition of Biofilm Formation in Urinary Tract Escherichia coli and Klebsiella Isolates by Metal Interference through Competition for Fur
    Viktoria Hancock, Malin Dahl, Per Klemm
  • Genetics and Molecular Biology
    Plasmid Transduction Using Bacteriophage Φadh for Expression of CC Chemokines by Lactobacillus gasseri ADH
    Leonard H. Damelin, Demetra Mavri-Damelin, Todd R. Klaenhammer, Caroline T. Tiemessen
  • Genetics and Molecular Biology
    Heptahelical Receptors GprC and GprD of Aspergillus fumigatus Are Essential Regulators of Colony Growth, Hyphal Morphogenesis, and Virulence
    Alexander Gehrke, Thorsten Heinekamp, Ilse D. Jacobsen, Axel A. Brakhage
  • Genetics and Molecular Biology
    Formation and Attachment of the Deoxysugar Moiety and Assembly of the Gene Cluster for Caprazamycin Biosynthesis
    Leonard Kaysser, Emmanuel Wemakor, Stefanie Siebenberg, Jose A. Salas, Jae Kyung Sohng, Bernd Kammerer, Bertolt Gust
  • Genetics and Molecular Biology
    High-Yield Intra- and Extracellular Protein Production Using Bacillus megaterium
    Simon Stammen, Britta Katrin Müller, Claudia Korneli, Rebekka Biedendieck, Martin Gamer, Ezequiel Franco-Lara, Dieter Jahn
  • Genetics and Molecular Biology
    Species-Specific Type II Restriction-Modification System of Xylella fastidiosa Temecula1
    Ayumi Matsumoto, Michele M. Igo

Physiology

  • Physiology
    Cellulosilyticum ruminicola, a Newly Described Rumen Bacterium That Possesses Redundant Fibrolytic-Protein-Encoding Genes and Degrades Lignocellulose with Multiple Carbohydrate- Borne Fibrolytic Enzymes
    Shichun Cai, Jiabao Li, Fen Ze Hu, Kegui Zhang, Yuanming Luo, Benjamin Janto, Robert Boissy, Garth Ehrlich, Xiuzhu Dong
  • Physiology
    Ethanol-Independent Biofilm Formation by a Flor Wine Yeast Strain of Saccharomyces cerevisiae
    Severino Zara, Michael K. Gross, Giacomo Zara, Marilena Budroni, Alan T. Bakalinsky
  • Physiology
    Killing of Bacteria by Copper Surfaces Involves Dissolved Copper
    Cristina Molteni, Helge K. Abicht, Marc Solioz
  • Physiology
    Monomethylamine as a Nitrogen Source for a Nonmethylotrophic Bacterium, Agrobacterium tumefaciens
    Yin Chen, Kathryn L. McAleer, J. Colin Murrell

Biotechnology

  • Biotechnology
    Structure, Function, and Insights into the Biosynthesis of a Head-to-Head Hydrocarbon in Shewanella oneidensis Strain MR-1
    David J. Sukovich, Jennifer L. Seffernick, Jack E. Richman, Kristopher A. Hunt, Jeffrey A. Gralnick, Lawrence P. Wackett
  • Biotechnology
    Widespread Head-to-Head Hydrocarbon Biosynthesis in Bacteria and Role of OleA
    David J. Sukovich, Jennifer L. Seffernick, Jack E. Richman, Jeffrey A. Gralnick, Lawrence P. Wackett
  • Biotechnology
    TDP-l-Megosamine Biosynthesis Pathway Elucidation and Megalomicin A Production in Escherichia coli
    Mariana Useglio, Salvador Peirú, Eduardo Rodríguez, Guillermo R. Labadie, John R. Carney, Hugo Gramajo
  • Biotechnology
    Comparative Transcriptomic and Proteomic Profiling of Industrial Wine Yeast Strains
    Debra Rossouw, Adri H. van den Dool, Dan Jacobson, Florian F. Bauer
  • Biotechnology
    Lactococcus lactis fabH, Encoding β-Ketoacyl-Acyl Carrier Protein Synthase, Can Be Functionally Replaced by the Plasmodium falciparum Congener
    Yu Du, Jolyn E. Gisselberg, Jacob D. Johnson, Patricia J. Lee, Sean T. Prigge, Brian O. Bachmann
  • Biotechnology
    Genetic Tool Development for a New Host for Biotechnology, the Thermotolerant Bacterium Bacillus coagulans
    Ákos T. Kovács, Mariska van Hartskamp, Oscar P. Kuipers, Richard van Kranenburg
  • Biotechnology
    Characterization of a Thermostable Short-Chain Alcohol Dehydrogenase from the Hyperthermophilic Archaeon Thermococcus sibiricus
    Tatiana N. Stekhanova, Andrey V. Mardanov, Ekaterina Y. Bezsudnova, Vadim M. Gumerov, Nikolai V. Ravin, Konstantin G. Skryabin, Vladimir O. Popov

Mycology

  • Mycology
    An Old Yellow Enzyme Gene Controls the Branch Point between Aspergillus fumigatus and Claviceps purpurea Ergot Alkaloid Pathways
    Christine M. Coyle, Johnathan Z. Cheng, Sarah E. O'Connor, Daniel G. Panaccione
  • Mycology
    Diverse Bacteria Inhabit Living Hyphae of Phylogenetically Diverse Fungal Endophytes
    Michele T. Hoffman, A. Elizabeth Arnold

Public Health Microbiology

  • Free
    Public Health Microbiology
    Role of Absolute Humidity in the Inactivation of Influenza Viruses on Stainless Steel Surfaces at Elevated Temperatures
    James McDevitt, Stephen Rudnick, Melvin First, John Spengler
  • Public Health Microbiology
    Oral Bacteria as Potential Probiotics for the Pharyngeal Mucosa
    Simone Guglielmetti, Valentina Taverniti, Mario Minuzzo, Stefania Arioli, Milda Stuknyte, Matti Karp, Diego Mora
  • Public Health Microbiology
    “Candidatus Anadelfobacter veles” and “Candidatus Cyrtobacter comes,” Two New Rickettsiales Species Hosted by the Protist Ciliate Euplotes harpa (Ciliophora, Spirotrichea)
    Claudia Vannini, Filippo Ferrantini, Karl-Heinz Schleifer, Wolfgang Ludwig, Franco Verni, Giulio Petroni
  • Public Health Microbiology
    Caenorhabditis elegans as an Alternative Model Host for Legionella pneumophila, and Protective Effects of Bifidobacterium infantis
    Tomomi Komura, Chikako Yasui, Hiroshi Miyamoto, Yoshikazu Nishikawa
  • Public Health Microbiology
    Molecular Detection and Characterization of Aichi Viruses in Sewage-Polluted Waters of Venezuela
    Ana Alcalá, Esmeralda Vizzi, Jesús Rodríguez-Díaz, José L. Zambrano, Walter Betancourt, Ferdinando Liprandi
  • Public Health Microbiology
    Hollow-Fiber Ultrafiltration and PCR Detection of Human-Associated Genetic Markers from Various Types of Surface Water in Florida
    Stephaney D. Leskinen, Miriam Brownell, Daniel V. Lim, Valerie J. Harwood
  • Public Health Microbiology
    Genetic Detection of Extended-Spectrum β-Lactamase-Containing Escherichia coli Isolates from Birds of Prey from Serra da Estrela Natural Reserve in Portugal
    Luís Pinto, Hajer Radhouani, Céline Coelho, Paulo Martins da Costa, Roméo Simões, Ricardo M. L. Brandão, Carmen Torres, Gilberto Igrejas, Patrícia Poeta

Evolutionary and Genomic Microbiology

  • Evolutionary and Genomic Microbiology
    Application of Multilocus Sequence Typing To Study the Genetic Structure of Megaplasmids in Medicago-Nodulating Rhizobia
    Peter van Berkum, Patrick Elia, Bertrand D. Eardly
  • Evolutionary and Genomic Microbiology
    Chromosome Stability and Gene Loss in Cockroach Endosymbionts
    Zakee L. Sabree, Patrick H. Degnan, Nancy A. Moran

Plant Microbiology

  • Plant Microbiology
    Characterization of Strains unlike Mesorhizobium loti That Nodulate Lotus spp. in Saline Soils of Granada, Spain
    María J. Lorite, Socorro Muñoz, José Olivares, María J. Soto, Juan Sanjuán

Geomicrobiology

  • Geomicrobiology
    Alignment of the c-Type Cytochrome OmcS along Pili of Geobacter sulfurreducens
    Ching Leang, Xinlei Qian, Tünde Mester, Derek R. Lovley

Author's Correction

  • Author's Correction
    Type II Diacylglycerol Acyltransferase from Claviceps purpurea with Ricinoleic Acid, a Hydroxyl Fatty Acid of Industrial Importance, as Preferred Substrate
    Ioannis Mavraganis, Dauenpen Meesapyodsuk, Patricia Vrinten, Mark Smith, Xiao Qiu
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Applied and Environmental Microbiology: 76 (12)

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volume 76, issue 12
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  • Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation
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  • Airborne Disinfection by Dry Fogging Efficiently Inactivates Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Mycobacteria, and Bacterial Spores and Shows Limitations of Commercial Spore Carriers
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