Applied and Environmental Microbiology: 77 (13)

July 1, 2011; Volume 77,Issue 13

Minireview

Minireview
Population Dynamics of Salmonella enterica Serotypes in Commercial Egg and Poultry Production
Steven L. Foley, Rajesh Nayak, Irene B. Hanning, Timothy J. Johnson, Jing Han, Steven C. Ricke

Food Microbiology

Food Microbiology
Diversity of Culturable Psychrophilic and Psychrotrophic Anaerobic Bacteria Isolated from Beef Abattoirs and Their Environments
G. Moschonas, D. J. Bolton, D. A. McDowell, J. J. Sheridan
Food Microbiology
Genome Sequence of a Food Spoilage Lactic Acid Bacterium, Leuconostoc gasicomitatum LMG 18811^T, in Association with Specific Spoilage Reactions
Per Johansson, Lars Paulin, Elina Säde, Noora Salovuori, Edward R. Alatalo, K. Johanna Björkroth, Petri Auvinen
Food Microbiology
Impact of Medicated Feed on the Development of Antimicrobial Resistance in Bacteria at Integrated Pig-Fish Farms in Vietnam
Son Thi Thanh Dang, Andreas Petersen, Dung Van Truong, Huong Thi Thanh Chu, Anders Dalsgaard
Food Microbiology
Goose-Type Lysozyme Inhibitor (PliG) Enhances Survival of Escherichia coli in Goose Egg Albumen
Lise Vanderkelen, Joris M. Van Herreweghe, Lien Callewaert, Chris W. Michiels

Public Health Microbiology

Public Health Microbiology
Application of a Broad-Range Resequencing Array for Detection of Pathogens in Desert Dust Samples from Kuwait and Iraq
Tomasz A. Leski, Anthony P. Malanoski, Michael J. Gregory, Baochuan Lin, David A. Stenger
Public Health Microbiology
Selective Quantification of Viable Escherichia coli Bacteria in Biosolids by Quantitative PCR with Propidium Monoazide Modification
Bilgin Taskin, Ayse Gul Gozen, Metin Duran
Public Health Microbiology
Selection Pressure Required for Long-Term Persistence of bla _CMY-2-Positive IncA/C Plasmids
Murugan Subbiah, Eva M. Top, Devendra H. Shah, Douglas R. Call

Physiology

Physiology
Regulation of the Edwardsiella ictaluri Type III Secretion System by pH and Phosphate Concentration through EsrA, EsrB, and EsrC
Matthew L. Rogge, Ronald L. Thune
Physiology
Small-Molecule Inhibition of Choline Catabolism in Pseudomonas aeruginosa and Other Aerobic Choline-Catabolizing Bacteria
Liam F. Fitzsimmons, Stevenson Flemer, A. Sandy Wurthmann, P. Bruce Deker, Indra Neil Sarkar, Matthew J. Wargo
Physiology
Monitoring the Metabolic Status of Geobacter Species in Contaminated Groundwater by Quantifying Key Metabolic Proteins with Geobacter-Specific Antibodies
Jiae Yun, Toshiyuki Ueki, Marzia Miletto, Derek R. Lovley
Physiology
Aeration Controls the Reduction and Methylation of Tellurium by the Aerobic, Tellurite-Resistant Marine Yeast Rhodotorula mucilaginosa
Patrick R. L. Ollivier, Andrew S. Bahrou, Thomas M. Church, Thomas E. Hanson
Physiology
Responses of Escherichia coli, Listeria monocytogenes, and Staphylococcus aureus to Simulated Food Processing Treatments, Determined Using Fluorescence-Activated Cell Sorting and Plate Counting
Deirdre Kennedy, Ultan P. Cronin, Martin G. Wilkinson

Invertebrate Microbiology

Invertebrate Microbiology
Disruption of the Termite Gut Microbiota and Its Prolonged Consequences for Fitness
Rebeca B. Rosengaus, Courtney N. Zecher, Kelley F. Schultheis, Robert M. Brucker, Seth R. Bordenstein
Invertebrate Microbiology
Secretion of Anti-Plasmodium Effector Proteins from a Natural Pantoea agglomerans Isolate by Using PelB and HlyA Secretion Signals
Dawn C. Bisi, David J. Lampe

Environmental Microbiology

Environmental Microbiology
An Enzymatic Treatment of Soil-Bound Prions Effectively Inhibits Replication
Samuel E. Saunders, Jason C. Bartz, Kurt C. Vercauteren, Shannon L. Bartelt-Hunt
Environmental Microbiology
Composition and Variability of Biofouling Organisms in Seawater Reverse Osmosis Desalination Plants
Minglu Zhang, Sunny Jiang, Dian Tanuwidjaja, Nikolay Voutchkov, Eric M. V. Hoek, Baoli Cai
Environmental Microbiology
Role of “Dehalococcoides” spp. in the Anaerobic Transformation of Hexachlorobenzene in European Rivers
Neslihan Taş, Miriam H. A. van Eekert, Anke Wagner, Gosse Schraa, Willem M. de Vos, Hauke Smidt
Environmental Microbiology
Culture-Independent Analysis of Bacterial Fuel Contamination Provides Insight into the Level of Concordance with the Standard Industry Practice of Aerobic Cultivation
Judith White, Jack Gilbert, Graham Hill, Edward Hill, Susan M. Huse, Andrew J. Weightman, Eshwar Mahenthiralingam

Genetics and Molecular Biology

Genetics and Molecular Biology
Environmental Influences on Competitive Hydrogen Peroxide Production in Streptococcus gordonii
Lanyan Zheng, Andreas Itzek, Zhiyun Chen, Jens Kreth
Genetics and Molecular Biology
The Histone-Like Protein Hlp Is Essential for Growth of Streptococcus pyogenes: Comparison of Genetic Approaches To Study Essential Genes
Julia V. Bugrysheva, Barbara J. Froehlich, Jeffrey A. Freiberg, June R. Scott
Genetics and Molecular Biology
FadD19 of Rhodococcus rhodochrous DSM43269, a Steroid-Coenzyme A Ligase Essential for Degradation of C-24 Branched Sterol Side Chains
M. H. Wilbrink, M. Petrusma, L. Dijkhuizen, R. van der Geize
Genetics and Molecular Biology
Functional Characterization of a Mucus-Specific LPXTG Surface Adhesin from Probiotic Lactobacillus rhamnosus GG
Ingemar von Ossowski, Reetta Satokari, Justus Reunanen, Sarah Lebeer, Sigrid C. J. De Keersmaecker, Jos Vanderleyden, Willem M. de Vos, Airi Palva
Open Access

Genetics and Molecular Biology
Dehydrogenase GRD1 Represents a Novel Component of the Cellulase Regulon in Trichoderma reesei (Hypocrea jecorina)
André Schuster, Christian P. Kubicek, Monika Schmoll
Genetics and Molecular Biology
Shewanella oneidensis MR-1 Sensory Box Protein Involved in Aerobic and Anoxic Growth
A. Sundararajan, J. Kurowski, T. Yan, D. M. Klingeman, M. P. Joachimiak, J. Zhou, B. Naranjo, J. A. Gralnick, M. W. Fields

Methods

Methods
Validation of Internal Controls for Extraction and Amplification of Nucleic Acids from Enteric Viruses in Water Samples
Akihiko Hata, Hiroyuki Katayama, Masaaki Kitajima, Chettiyappan Visvanathan, Chea Nol, Hiroaki Furumai
Methods
Subtyping Salmonella enterica Serovar Enteritidis Isolates from Different Sources by Using Sequence Typing Based on Virulence Genes and Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs)
Fenyun Liu, Subhashinie Kariyawasam, Bhushan M. Jayarao, Rodolphe Barrangou, Peter Gerner-Smidt, Efrain M. Ribot, Stephen J. Knabel, Edward G. Dudley
Methods
Lectin Microarray Reveals Binding Profiles of Lactobacillus casei Strains in a Comprehensive Analysis of Bacterial Cell Wall Polysaccharides
Emi Yasuda, Hiroaki Tateno, Jun Hirabarashi, Tohru Iino, Tomoyuki Sako
Methods
Disruption of a Type II Endonuclease (TDE0911) Enables Treponema denticola ATCC 35405 To Accept an Unmethylated Shuttle Vector
Jiang Bian, Chunhao Li
Methods
Development of a Real-Time PCR Assay for Detection and Quantification of Rhizobium leguminosarum Bacteria and Discrimination between Different Biovars in Zinc-Contaminated Soil
Catriona A. Macdonald, Ian M. Clark, Penny R. Hirsch, Fang-Jie Zhao, Steve P. McGrath

Biotechnology

Biotechnology
Coevolutionary Analysis Enabled Rational Deregulation of Allosteric Enzyme Inhibition in Corynebacterium glutamicum for Lysine Production
Zhen Chen, Weiqian Meyer, Sugima Rappert, Jibin Sun, An-Ping Zeng
Biotechnology
Meta-Analysis and Functional Validation of Nutritional Requirements of Solventogenic Clostridia Growing under Butanol Stress Conditions and Coutilization of d-Glucose and d-Xylose
Humberto Heluane, Matthew R. Evans, Sue F. Dagher, José M. Bruno-Bárcena
Biotechnology
Enhancing the Stress Tolerance and Virulence of an Entomopathogen by Metabolic Engineering of Dihydroxynaphthalene Melanin Biosynthesis Genes
Min N. Tseng, Pei C. Chung, Shean S. Tzean
Biotechnology
Effect of Chemical Chaperones in Improving the Solubility of Recombinant Proteins in Escherichia coli
Shivcharan Prasad, Prashant B. Khadatare, Ipsita Roy
Open Access

Biotechnology
Engineering Escherichia coli BL21(DE3) Derivative Strains To Minimize E. coli Protein Contamination after Purification by Immobilized Metal Affinity Chromatography
Carine Robichon, Jianying Luo, Thomas B. Causey, Jack S. Benner, James C. Samuelson

Mycology

Open Access

Mycology
Identification of Mycoparasitism-Related Genes in Trichoderma atroviride
Barbara Reithner, Enrique Ibarra-Laclette, Robert L. Mach, Alfredo Herrera-Estrella
Mycology
Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species
Amber Vanden Wymelenberg, Jill Gaskell, Michael Mozuch, Sandra Splinter BonDurant, Grzegorz Sabat, John Ralph, Oleksandr Skyba, Shawn D. Mansfield, Robert A. Blanchette, Igor V. Grigoriev, Philip J. Kersten, Dan Cullen
Mycology
Phylogenetic and Functional Analysis of Aspergillus fumigatus MGTC, a Fungal Protein Homologous to a Bacterial Virulence Factor
Amandine Gastebois, Anne-Beatrice Blanc Potard, Simonetta Gribaldo, Rémi Beau, Jean Paul Latgé, Isabelle Mouyna

Plant Microbiology

Plant Microbiology
Involvement of the Azorhizobial Chromosome Partition Gene (parA) in the Onset of Bacteroid Differentiation during Sesbania rostrata Stem Nodule Development
Chi-Te Liu, Kyung-Bum Lee, Yu-Sheng Wang, Min-Hua Peng, Kung-Ta Lee, Shino Suzuki, Tadahiro Suzuki, Hiroshi Oyaizu
Plant Microbiology
The Genotype of the Calcium/Calmodulin-Dependent Protein Kinase Gene (CCaMK) Determines Bacterial Community Diversity in Rice Roots under Paddy and Upland Field Conditions
Seishi Ikeda, Takashi Okubo, Naoya Takeda, Mari Banba, Kazuhiro Sasaki, Haruko Imaizumi-Anraku, Shinsuke Fujihara, Yoshinari Ohwaki, Kenshiro Ohshima, Yoshimichi Fukuta, Shima Eda, Hisayuki Mitsui, Masahira Hattori, Tadashi Sato, Takuro Shinano, Kiwamu Minamisawa
Plant Microbiology
Bacterial Subfamily of LuxR Regulators That Respond to Plant Compounds
Sujatha Subramoni, Juan F. Gonzalez, Aaron Johnson, Maria Péchy-Tarr, Laurène Rochat, Ian Paulsen, Joyce E. Loper, Christoph Keel, Vittorio Venturi

Microbial Ecology

Microbial Ecology
Effect of Lactobacillus fermentum on Beta2 Toxin Production by Clostridium perfringens
Janneke G. Allaart, Alphons J. A. M. van Asten, Johannes C. M. Vernooij, Andrea Gröne
Microbial Ecology
Thalassospira sp. Isolated from the Oligotrophic Eastern Mediterranean Sea Exhibits Chemotaxis toward Inorganic Phosphate during Starvation
Annemarie Hütz, Karin Schubert, Jörg Overmann
Microbial Ecology
Anaerobic Oxidation of Methane in Sediments of Lake Constance, an Oligotrophic Freshwater Lake
Jörg S. Deutzmann, Bernhard Schink
Microbial Ecology
Preferential Feeding by the Ciliates Chilodonella and Tetrahymena spp. and Effects of These Protozoa on Bacterial Biofilm Structure and Composition
Andrew Dopheide, Gavin Lear, Rebecca Stott, Gillian Lewis
Microbial Ecology
Validation of Heavy-Water Stable Isotope Probing for the Characterization of Rapidly Responding Soil Bacteria
Zachary T. Aanderud, Jay T. Lennon
Microbial Ecology
Links between Ammonia Oxidizer Community Structure, Abundance, and Nitrification Potential in Acidic Soils
Huaiying Yao, Yangmei Gao, Graeme W. Nicol, Colin D. Campbell, James I. Prosser, Limei Zhang, Wenyan Han, Brajesh K. Singh
Microbial Ecology
Inhibition of the NF-κB Pathway in Human Intestinal Epithelial Cells by Commensal Streptococcus salivarius
Ghalia Kaci, Omar Lakhdari, Joël Doré, S. Dusko Ehrlich, Pierre Renault, Hervé M. Blottière, Christine Delorme
Microbial Ecology
Unsuspected Diversity of Arsenite-Oxidizing Bacteria as Revealed by Widespread Distribution of the aoxB Gene in Prokaryotes
Audrey Heinrich-Salmeron, Audrey Cordi, Céline Brochier-Armanet, David Halter, Christophe Pagnout, Elham Abbaszadeh-fard, Didier Montaut, Fabienne Seby, Philippe N. Bertin, Pascale Bauda, Florence Arsène-Ploetze

Evolutionary and Genomic Microbiology

Evolutionary and Genomic Microbiology
New Clues about the Evolutionary History of Metabolic Losses in Bacterial Endosymbionts, Provided by the Genome of Buchnera aphidicola from the Aphid Cinara tujafilina
Araceli Lamelas, María José Gosalbes, Andrés Moya, Amparo Latorre

Biodegradation

Biodegradation
Patchwork Assembly of nag-Like Nitroarene Dioxygenase Genes and the 3-Chlorocatechol Degradation Cluster for Evolution of the 2-Chloronitrobenzene Catabolism Pathway in Pseudomonas stutzeri ZWLR2-1
Hong Liu, Shu-Jun Wang, Jun-Jie Zhang, Hui Dai, Huiru Tang, Ning-Yi Zhou

Geomicrobiology

Geomicrobiology
Shedding Light on Selenium Biomineralization: Proteins Associated with Bionanominerals
Markus Lenz, Boris Kolvenbach, Benjamin Gygax, Suzette Moes, Philippe F. X. Corvini
Geomicrobiology
Environmental and Taxonomic Bacterial Diversity of Anaerobic Uranium(IV) Bio-Oxidation
Karrie A. Weber, J. Cameron Thrash, J. Ian Van Trump, Laurie A. Achenbach, John D. Coates

Erratum

Erratum
Integrated Regulation of Acetoin Fermentation by Quorum Sensing and pH in Serratia plymuthica RVH1
Pieter Moons, Rob Van Houdt, Bram Vivijs, Chris W. Michiels, Abram Aertsen

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Table of Contents

Minireview

Food Microbiology

Public Health Microbiology

Physiology

Invertebrate Microbiology

Environmental Microbiology

Genetics and Molecular Biology

Methods

Biotechnology

Mycology

Plant Microbiology

Microbial Ecology

Evolutionary and Genomic Microbiology

Biodegradation

Geomicrobiology

Erratum

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