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Applied and Environmental Microbiology
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Table of Contents

August 15, 2013; Volume 79,Issue 16

Spotlight

  • Free
    Spotlight
    Articles of Significant Interest Selected from This Issue by the Editors

Biotechnology

  • Biotechnology
    Activating Phosphoenolpyruvate Carboxylase and Phosphoenolpyruvate Carboxykinase in Combination for Improvement of Succinate Production
    Zaigao Tan, Xinna Zhu, Jing Chen, Qingyan Li, Xueli Zhang
  • Biotechnology
    Roles of the Yap1 Transcription Factor and Antioxidants in Saccharomyces cerevisiae's Tolerance to Furfural and 5-Hydroxymethylfurfural, Which Function as Thiol-Reactive Electrophiles Generating Oxidative Stress
    Daehee Kim, Ji-Sook Hahn

Environmental Microbiology

  • Environmental Microbiology
    Transcriptome Sequencing (RNA-seq) Analysis of the Effects of Metal Nanoparticle Exposure on the Transcriptome of Chlamydomonas reinhardtii
    Dana F. Simon, Rute F. Domingos, Charles Hauser, Colin M. Hutchins, William Zerges, Kevin J. Wilkinson
  • Environmental Microbiology
    Lytic Infection of Lactococcus lactis by Bacteriophages Tuc2009 and c2 Triggers Alternative Transcriptional Host Responses
    Stuart Ainsworth, Aldert Zomer, Jennifer Mahony, Douwe van Sinderen
  • Environmental Microbiology
    Dispersal and Survival of Flavobacterium psychrophilum Phages In Vivo in Rainbow Trout and In Vitro under Laboratory Conditions: Implications for Their Use in Phage Therapy
    Lone Madsen, Sif K. Bertelsen, Inger Dalsgaard, Mathias Middelboe
  • Environmental Microbiology
    Molecular Characterization of “Candidatus Similichlamydia latridicola” gen. nov., sp. nov. (Chlamydiales: “Candidatus Parilichlamydiaceae”), a Novel Chlamydia-Like Epitheliocystis Agent in the Striped Trumpeter, Latris lineata (Forster)
    M. C. Stride, A. Polkinghorne, T. L. Miller, B. F. Nowak
  • Environmental Microbiology
    Oxygen Consumption Rates of Bacteria under Nutrient-Limited Conditions
    Timothy E. Riedel, William M. Berelson, Kenneth H. Nealson, Steven E. Finkel
  • Environmental Microbiology
    Litter Supply as a Driver of Microbial Activity and Community Structure on Decomposing Leaves: a Test in Experimental Streams
    Aline Frossard, Linda Gerull, Michael Mutz, Mark O. Gessner
  • Environmental Microbiology
    Molecular Epidemiology of Newcastle Disease in Mexico and the Potential Spillover of Viruses from Poultry into Wild Bird Species
    Stivalis Cardenas Garcia, Roberto Navarro Lopez, Romeo Morales, Miguel A. Olvera, Miguel A. Marquez, Ruben Merino, Patti J. Miller, Claudio L. Afonso
  • Environmental Microbiology
    Real-Time PCR for Quantitative Analysis of Human Commensal Escherichia coli Populations Reveals a High Frequency of Subdominant Phylogroups
    Mounira Smati, Olivier Clermont, Frédéric Le Gal, Olivier Schichmanoff, Françoise Jauréguy, Alain Eddi, Erick Denamur, Bertrand Picard, for the Coliville Group
  • Environmental Microbiology
    Acetate Production from Oil under Sulfate-Reducing Conditions in Bioreactors Injected with Sulfate and Nitrate
    Cameron M. Callbeck, Akhil Agrawal, Gerrit Voordouw
  • Environmental Microbiology
    PCR Characterization Suggests that an Unusual Range of Bartonella Species Infect the Striped Field Mouse (Apodemus agrarius) in Central Europe
    Joanna Hildebrand, Anna Paziewska-Harris, Grzegorz Zaleśny, Philip D. Harris
  • Open Access
    Environmental Microbiology
    Clostridium perfringens Is Not Suitable for the Indication of Fecal Pollution from Ruminant Wildlife but Is Associated with Excreta from Nonherbivorous Animals and Human Sewage
    J. Vierheilig, C. Frick, R. E. Mayer, A. K. T. Kirschner, G. H. Reischer, J. Derx, R. L. Mach, R. Sommer, A. H. Farnleitner

Enzymology and Protein Engineering

  • Enzymology and Protein Engineering
    l-Amino Acid Ligase from Pseudomonas syringae Producing Tabtoxin Can Be Used for Enzymatic Synthesis of Various Functional Peptides
    Toshinobu Arai, Yasuhiro Arimura, Shun Ishikura, Kuniki Kino
  • Enzymology and Protein Engineering
    Engineering the meso-Diaminopimelate Dehydrogenase from Symbiobacterium thermophilum by Site Saturation Mutagenesis for d-Phenylalanine Synthesis
    Xiuzhen Gao, Fang Huang, Jinhui Feng, Xi Chen, Hailing Zhang, Zhixiang Wang, Qiaqing Wu, Dunming Zhu

Evolutionary and Genomic Microbiology

  • Evolutionary and Genomic Microbiology
    Proposed Model for the High Rate of Rearrangement and Rapid Migration Observed in Some IncA/C Plasmid Lineages
    R. J. Meinersmann, R. L. Lindsey, J. L. Bono, T. P. Smith, B. B. Oakley
  • Evolutionary and Genomic Microbiology
    Sequence Variability of P2-Like Prophage Genomes Carrying the Cytolethal Distending Toxin V Operon in Escherichia coli O157
    Domonkos Sváb, Balázs Horváth, Gergely Maróti, Ulrich Dobrindt, István Tóth
  • Evolutionary and Genomic Microbiology
    Biosynthesis of the Osmoprotectant Ectoine, but Not Glycine Betaine, Is Critical for Survival of Osmotically Stressed Vibrio parahaemolyticus Cells
    Serge Y. Ongagna-Yhombi, E. Fidelma Boyd

Food Microbiology

  • Food Microbiology
    Identification and Characterization of a Novel Flagellum-Dependent Salmonella-Infecting Bacteriophage, iEPS5
    Younho Choi, Hakdong Shin, Ju-Hoon Lee, Sangryeol Ryu
  • Food Microbiology
    Shiga Toxin 2-Encoding Bacteriophages in Human Fecal Samples from Healthy Individuals
    Alexandre Martinez-Castillo, Pablo Quirós, Ferran Navarro, Elisenda Miró, Maite Muniesa
  • Food Microbiology
    Whole-Genome Transcriptional Analysis of Escherichia coli during Heat Inactivation Processes Related to Industrial Cooking
    A. Guernec, P. Robichaud-Rincon, L. Saucier
  • Food Microbiology
    Oral Administration of Live Exopolysaccharide-Producing Pediococcus parvulus, but Not Purified Exopolysaccharide, Suppressed Enterobacteriaceae without Affecting Bacterial Diversity in Ceca of Mice
    Cecilia Lindström, Jie Xu, Rickard Öste, Olle Holst, Göran Molin

Genetics and Molecular Biology

  • Genetics and Molecular Biology
    Development of a New Method for Detection and Identification of Oenococcus oeni Bacteriophages Based on Endolysin Gene Sequence and Randomly Amplified Polymorphic DNA
    Francesca Doria, Chiara Napoli, Antonella Costantini, Graziella Berta, Juan-Carlos Saiz, Emilia Garcia-Moruno
  • Genetics and Molecular Biology
    Multilocus Genotype Analysis of Escherichia coli O157 Isolates from Australia and the United States Provides Evidence of Geographic Divergence
    Glen E. Mellor, Thomas E. Besser, Margaret A. Davis, Brittany Beavis, WooKyung Jung, Helen V. Smith, Amy V. Jennison, Christine J. Doyle, P. Scott Chandry, Kari S. Gobius, Narelle Fegan

Invertebrate Microbiology

  • Invertebrate Microbiology
    Bacterial Cell Wall Synthesis Gene uppP Is Required for Burkholderia Colonization of the Stinkbug Gut
    Jiyeun Kate Kim, Ho Jin Lee, Yoshitomo Kikuchi, Wataru Kitagawa, Naruo Nikoh, Takema Fukatsu, Bok Luel Lee
  • Invertebrate Microbiology
    Diversity of Bacterial Endosymbionts Associated with Macrosteles Leafhoppers Vectoring Phytopathogenic Phytoplasmas
    Yoshiko Ishii, Yu Matsuura, Shigeyuki Kakizawa, Naruo Nikoh, Takema Fukatsu

Methods

  • Methods
    An Improved Method for oriT-Directed Cloning and Functionalization of Large Bacterial Genomic Regions
    Brian H. Kvitko, Ian A. McMillan, Herbert P. Schweizer
  • Methods
    Isolation of Optically Targeted Single Bacteria by Application of Fluidic Force Microscopy to Aerobic Anoxygenic Phototrophs from the Phyllosphere
    Philipp Stiefel, Tomaso Zambelli, Julia A. Vorholt
  • Methods
    Strain/Species-Specific Probe Design for Microbial Identification Microarrays
    Qichao Tu, Zhili He, Ye Deng, Jizhong Zhou

Microbial Ecology

  • Microbial Ecology
    The Microcosm Mediates the Persistence of Shiga Toxin-Producing Escherichia coli in Freshwater Ecosystems
    Steven A. Mauro, Hannah Opalko, Kyle Lindsay, Michael P. Colon, Gerald B. Koudelka
  • Microbial Ecology
    Induction of Biofilm Formation in the Betaproteobacterium Burkholderia unamae CK43B Exposed to Exogenous Indole and Gallic Acid
    Dongyeop Kim, Irnayuli R. Sitepu, Yasuyuki Hashidoko
  • Microbial Ecology
    Dry/Wet Cycles Change the Activity and Population Dynamics of Methanotrophs in Rice Field Soil
    Ke Ma, Ralf Conrad, Yahai Lu
  • Microbial Ecology
    Aquacultured Rainbow Trout (Oncorhynchus mykiss) Possess a Large Core Intestinal Microbiota That Is Resistant to Variation in Diet and Rearing Density
    Sandi Wong, Thomas Waldrop, Steven Summerfelt, John Davidson, Frederic Barrows, P. Brett Kenney, Timothy Welch, Gregory D. Wiens, Kevin Snekvik, John F. Rawls, Christopher Good
  • Open Access
    Microbial Ecology
    Proteome of the Nematode-Trapping Cells of the Fungus Monacrosporium haptotylum
    Karl-Magnus Andersson, Tejashwari Meerupati, Fredrik Levander, Eva Friman, Dag Ahrén, Anders Tunlid

Mycology

  • Mycology
    Inhibition of Aspergillus niger Phosphate Solubilization by Fluoride Released from Rock Phosphate
    Gilberto de Oliveira Mendes, Nikolay Bojkov Vassilev, Victor Hugo Araújo Bonduki, Ivo Ribeiro da Silva, José Ivo Ribeiro, Maurício Dutra Costa

Public Health Microbiology

  • Public Health Microbiology
    Longitudinal Monitoring of Extended-Spectrum-Beta-Lactamase/AmpC-Producing Escherichia coli at German Broiler Chicken Fattening Farms
    H. Laube, A. Friese, C. von Salviati, B. Guerra, A. Käsbohrer, L. Kreienbrock, U. Roesler
  • Public Health Microbiology
    Strain-Dependent Augmentation of Tight-Junction Barrier Function in Human Primary Epidermal Keratinocytes by Lactobacillus and Bifidobacterium Lysates
    Reshma Sultana, Andrew J. McBain, Catherine A. O'Neill
  • Public Health Microbiology
    Adherence to and Invasion of Human Intestinal Cells by Arcobacter Species and Their Virulence Genotypes
    Arturo Levican, Aldukali Alkeskas, Claudia Günter, Stephen J. Forsythe, María José Figueras

Masthead

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    Masthead
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Applied and Environmental Microbiology: 79 (16)

In This Issue

volume 79, issue 16
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  • Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy
  • Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation
  • Following Coffee Production from Cherries to Cup: Microbiological and Metabolomic Analysis of Wet Processing of Coffea arabica
  • Airborne Disinfection by Dry Fogging Efficiently Inactivates Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Mycobacteria, and Bacterial Spores and Shows Limitations of Commercial Spore Carriers
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