Skip to main content
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems
  • Log in
  • My alerts
  • My Cart

Main menu

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About AEM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions
  • ASM
    • Antimicrobial Agents and Chemotherapy
    • Applied and Environmental Microbiology
    • Clinical Microbiology Reviews
    • Clinical and Vaccine Immunology
    • EcoSal Plus
    • Eukaryotic Cell
    • Infection and Immunity
    • Journal of Bacteriology
    • Journal of Clinical Microbiology
    • Journal of Microbiology & Biology Education
    • Journal of Virology
    • mBio
    • Microbiology and Molecular Biology Reviews
    • Microbiology Resource Announcements
    • Microbiology Spectrum
    • Molecular and Cellular Biology
    • mSphere
    • mSystems

User menu

  • Log in
  • My alerts
  • My Cart

Search

  • Advanced search
Applied and Environmental Microbiology
publisher-logosite-logo

Advanced Search

  • Home
  • Articles
    • Current Issue
    • Accepted Manuscripts
    • COVID-19 Special Collection
    • Archive
    • Minireviews
  • For Authors
    • Submit a Manuscript
    • Scope
    • Editorial Policy
    • Submission, Review, & Publication Processes
    • Organization and Format
    • Errata, Author Corrections, Retractions
    • Illustrations and Tables
    • Nomenclature
    • Abbreviations and Conventions
    • Publication Fees
    • Ethics Resources and Policies
  • About the Journal
    • About AEM
    • Editor in Chief
    • Editorial Board
    • For Reviewers
    • For the Media
    • For Librarians
    • For Advertisers
    • Alerts
    • RSS
    • FAQ
  • Subscribe
    • Members
    • Institutions
Methods

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

James J. Kozich, Sarah L. Westcott, Nielson T. Baxter, Sarah K. Highlander, Patrick D. Schloss
James J. Kozich
aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sarah L. Westcott
aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Nielson T. Baxter
aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Sarah K. Highlander
bDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
Patrick D. Schloss
aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
  • Find this author on Google Scholar
  • Find this author on PubMed
  • Search for this author on this site
DOI: 10.1128/AEM.01043-13
  • Article
  • Figures & Data
  • Info & Metrics
  • PDF
Loading

Article Information

DOI 
https://doi.org/10.1128/AEM.01043-13
PubMed 
23793624

Published By 
American Society for Microbiology Journals
History 
  • Received April 1, 2013
  • Accepted June 13, 2013
  • Published online August 7, 2013.

Copyright & Usage 
Copyright © 2013, American Society for Microbiology. All Rights Reserved.

Article Versions

  • Accepted Manuscript version (June 21, 2013).
  • You are viewing the most recent version of this article.

Author Information

  1. James J. Kozicha,
  2. Sarah L. Westcotta,
  3. Nielson T. Baxtera,
  4. Sarah K. Highlanderb and
  5. Patrick D. Schlossa
  1. aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
  2. bDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas, USA
  • Address correspondence to Patrick D. Schloss, pschloss{at}umich.edu.

Article usage

Article usage: June 2013 to March 2021

Rendering graph...
AbstractFullPdf
Jun 20133959448
Jul 20135272364
Aug 20131299135415
Sep 2013709113246
Oct 2013655153303
Nov 2013608103250
Dec 201339371178
Jan 2014469121335
Feb 2014538148313
Mar 2014516193328
Apr 2014520235446
May 2014463280309
Jun 2014473204267
Jul 2014438201296
Aug 2014337237264
Sep 2014494277339
Oct 2014519241294
Nov 2014539264263
Dec 2014363193327
Jan 2015591358326
Feb 2015708257297
Mar 2015777286669
Apr 2015711284984
May 2015668262886
Jun 2015634288810
Jul 2015514284843
Aug 2015524279870
Sep 2015437271798
Oct 2015360226237
Nov 2015407243282
Dec 2015415201228
Jan 2016412482304
Feb 2016447272310
Mar 2016527233360
Apr 2016427235303
May 2016374236286
Jun 2016370235249
Jul 2016351216199
Aug 2016348277213
Sep 2016307188193
Oct 2016433352310
Nov 2016407217290
Dec 2016645189203
Jan 2017512195235
Feb 2017542221553
Mar 2017599233270
Apr 2017441154196
May 2017463188239
Jun 2017505221238
Jul 2017408188241
Aug 2017497220215
Sep 2017403193192
Oct 2017438236220
Nov 2017421211243
Dec 2017392156177
Jan 2018474226242
Feb 2018383192191
Mar 2018475234228
Apr 2018487194240
May 2018527279283
Jun 2018495234232
Jul 2018469200276
Aug 2018301233235
Sep 2018179352255
Oct 2018245484297
Nov 2018242540335
Dec 2018128388195
Jan 2019178539301
Feb 2019122405185
Mar 2019214878322
Apr 2019207668262
May 2019170819267
Jun 2019161731233
Jul 2019156693262
Aug 2019141713294
Sep 2019124784214
Oct 2019119892236
Nov 2019107641205
Dec 2019104734160
Jan 2020121801219
Feb 2020108587212
Mar 2020101920242
Apr 20201392892340
May 20201432998328
Jun 20201141315263
Jul 2020841745228
Aug 2020893400224
Sep 20201231205296
Oct 20201151261340
Nov 20201452593268
Dec 20201192373232
Jan 2021144702304
Feb 2021114609218
Mar 20212816651
PreviousNext
Back to top
Download PDF
Citation Tools
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich, Sarah L. Westcott, Nielson T. Baxter, Sarah K. Highlander, Patrick D. Schloss
Applied and Environmental Microbiology Aug 2013, 79 (17) 5112-5120; DOI: 10.1128/AEM.01043-13

Citation Manager Formats

  • BibTeX
  • Bookends
  • EasyBib
  • EndNote (tagged)
  • EndNote 8 (xml)
  • Medlars
  • Mendeley
  • Papers
  • RefWorks Tagged
  • Ref Manager
  • RIS
  • Zotero
Print

Alerts
Sign In to Email Alerts with your Email Address
Email

Thank you for sharing this Applied and Environmental Microbiology article.

NOTE: We request your email address only to inform the recipient that it was you who recommended this article, and that it is not junk mail. We do not retain these email addresses.

Enter multiple addresses on separate lines or separate them with commas.
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
(Your Name) has forwarded a page to you from Applied and Environmental Microbiology
(Your Name) thought you would be interested in this article in Applied and Environmental Microbiology.
CAPTCHA
This question is for testing whether or not you are a human visitor and to prevent automated spam submissions.
Share
Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform
James J. Kozich, Sarah L. Westcott, Nielson T. Baxter, Sarah K. Highlander, Patrick D. Schloss
Applied and Environmental Microbiology Aug 2013, 79 (17) 5112-5120; DOI: 10.1128/AEM.01043-13
del.icio.us logo Digg logo Reddit logo Twitter logo CiteULike logo Facebook logo Google logo Mendeley logo
  • Top
  • Article
    • ABSTRACT
    • INTRODUCTION
    • MATERIALS AND METHODS
    • RESULTS AND DISCUSSION
    • ACKNOWLEDGMENTS
    • FOOTNOTES
    • REFERENCES
  • Figures & Data
  • Info & Metrics
  • PDF

Related Articles

Cited By...

About

  • About AEM
  • Editor in Chief
  • Editorial Board
  • Policies
  • For Reviewers
  • For the Media
  • For Librarians
  • For Advertisers
  • Alerts
  • RSS
  • FAQ
  • Permissions
  • Journal Announcements

Authors

  • ASM Author Center
  • Submit a Manuscript
  • Article Types
  • Ethics
  • Contact Us

Follow #AppEnvMicro

@ASMicrobiology

       

ASM Journals

ASM journals are the most prominent publications in the field, delivering up-to-date and authoritative coverage of both basic and clinical microbiology.

About ASM | Contact Us | Press Room

 

ASM is a member of

Scientific Society Publisher Alliance

 

American Society for Microbiology
1752 N St. NW
Washington, DC 20036
Phone: (202) 737-3600

Copyright © 2021 American Society for Microbiology | Privacy Policy | Website feedback

 

Print ISSN: 0099-2240; Online ISSN: 1098-5336