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Table of Contents

September 15, 2013; Volume 79,Issue 18

Spotlight

  • Free
    Spotlight
    Articles of Significant Interest Selected from This Issue by the Editors

Biodegradation

  • Biodegradation
    ipso-Hydroxylation and Subsequent Fragmentation: a Novel Microbial Strategy To Eliminate Sulfonamide Antibiotics
    Benjamin Ricken, Philippe F. X. Corvini, Danuta Cichocka, Martina Parisi, Markus Lenz, Dominik Wyss, Paula M. Martínez-Lavanchy, Jochen A. Müller, Patrick Shahgaldian, Ludovico G. Tulli, Hans-Peter E. Kohler, Boris A. Kolvenbach

Biotechnology

  • Biotechnology
    Deletion of creB in Aspergillus oryzae Increases Secreted Hydrolytic Enzyme Activity
    A. J. Hunter, T. A. Morris, B. Jin, C. P. Saint, J. M. Kelly
  • Biotechnology
    Screening for Glycosylphosphatidylinositol-Modified Cell Wall Proteins in Pichia pastoris and Their Recombinant Expression on the Cell Surface
    Li Zhang, Shuli Liang, Xinying Zhou, Zi Jin, Fengchun Jiang, Shuangyan Han, Suiping Zheng, Ying Lin
  • Biotechnology
    Bacillus subtilis Strain Engineered for Treatment of Soil-Transmitted Helminth Diseases
    Yan Hu, Melanie M. Miller, Alan I. Derman, Brian L. Ellis, Rose Gomes Monnerat, Joe Pogliano, Raffi V. Aroian
  • Biotechnology
    Platform Engineering of Corynebacterium glutamicum with Reduced Pyruvate Dehydrogenase Complex Activity for Improved Production of l-Lysine, l-Valine, and 2-Ketoisovalerate
    Jens Buchholz, Andreas Schwentner, Britta Brunnenkan, Christina Gabris, Simon Grimm, Robert Gerstmeir, Ralf Takors, Bernhard J. Eikmanns, Bastian Blombach
  • Biotechnology
    Generation of Affinity-Tagged Fluoromycobacteriophages by Mixed Assembly of Phage Capsids
    Mariana Piuri, Liliana Rondón, Estefanía Urdániz, Graham F. Hatfull

Environmental Microbiology

  • Environmental Microbiology
    Relationship between Presence of Cows with Milk Positive for Mycobacterium avium subsp. paratuberculosis-Specific Antibody by Enzyme-Linked Immunosorbent Assay and Viable M. avium subsp. paratuberculosis in Dust in Cattle Barns
    Susanne W. F. Eisenberg, Ruj Chuchaisangrat, Mirjam Nielen, Ad P. Koets
  • Environmental Microbiology
    Diversity, Community Composition, and Dynamics of Nonpigmented and Late-Pigmenting Rapidly Growing Mycobacteria in an Urban Tap Water Production and Distribution System
    S. Dubrou, J. Konjek, E. Macheras, B. Welté, L. Guidicelli, E. Chignon, M. Joyeux, J. L. Gaillard, B. Heym, T. Tully, G. Sapriel
  • Environmental Microbiology
    Characterization of Maltocin P28, a Novel Phage Tail-Like Bacteriocin from Stenotrophomonas maltophilia
    Jian Liu, Peng Chen, Congyi Zheng, Yu-Ping Huang
  • Environmental Microbiology
    Differential Growth of and Nanoscale TiO2 Accumulation in Tetrahymena thermophila by Direct Feeding versus Trophic Transfer from Pseudomonas aeruginosa
    Randall E. Mielke, John H. Priester, Rebecca A. Werlin, Jeff Gelb, Allison M. Horst, Eduardo Orias, Patricia A. Holden
  • Environmental Microbiology
    Biofilm Formation by the Fish Pathogen Flavobacterium columnare: Development and Parameters Affecting Surface Attachment
    Wenlong Cai, Leonardo De La Fuente, Covadonga R. Arias
  • Environmental Microbiology
    Identification and Characterization of a NaCl-Responsive Genetic Locus Involved in Survival during Desiccation in Sinorhizobium meliloti
    Jan A. C. Vriezen, Frans J. de Bruijn, Klaus Nüsslein
  • Environmental Microbiology
    Utilization of Heme as an Iron Source by Marine Alphaproteobacteria in the Roseobacter Clade
    Kelly L. Roe, Shane L. Hogle, Katherine A. Barbeau
  • Environmental Microbiology
    Distribution of Virulence Genes in Clinical and Environmental Vibrio cholerae Strains in Bangladesh
    Nur A. Hasan, Daniela Ceccarelli, Christopher J. Grim, Elisa Taviani, Jinna Choi, Abdus Sadique, Munirul Alam, Abul K. Siddique, R. Bradley Sack, Anwar Huq, Rita R. Colwell

Enzymology and Protein Engineering

  • Enzymology and Protein Engineering
    Structure-Function Relationships in Hydrophobins: Probing the Role of Charged Side Chains
    Michael Lienemann, Julie-Anne Gandier, Jussi J. Joensuu, Atsushi Iwanaga, Yoshiyuki Takatsuji, Tetsuya Haruyama, Emma Master, Maija Tenkanen, Markus B. Linder
  • Enzymology and Protein Engineering
    Proteolysin, a Novel Highly Thermostable and Cosolvent-Compatible Protease from the Thermophilic Bacterium Coprothermobacter proteolyticus
    Ana Toplak, Bian Wu, Fabrizia Fusetti, Peter J. L. M. Quaedflieg, Dick B. Janssen

Food Microbiology

  • Food Microbiology
    Evidence of Metabolic Switching and Implications for Food Safety from the Phenome(s) of Salmonella enterica Serovar Typhimurium DT104 Cultured at Selected Points across the Pork Production Food Chain
    Marta Martins, Matthew P. McCusker, Evonne M. McCabe, Denis O'Leary, Geraldine Duffy, Séamus Fanning
  • Food Microbiology
    prfA-Like Transcription Factor Gene lmo0753 Contributes to l-Rhamnose Utilization in Listeria monocytogenes Strains Associated with Human Food-Borne Infections
    Joelle K. Salazar, Zhuchun Wu, P. David McMullen, Qin Luo, Nancy E. Freitag, Mary Lou Tortorello, Shencai Hu, Wei Zhang
  • Food Microbiology
    Abiotic and Microbiotic Factors Controlling Biofilm Formation by Thermophilic Sporeformers
    Yu Zhao, Martien P. M. Caspers, Karin I. Metselaar, Paulo de Boer, Guus Roeselers, Roy Moezelaar, Masja Nierop Groot, Roy C. Montijn, Tjakko Abee, Remco Kort
  • Food Microbiology
    Core Fluxome and Metafluxome of Lactic Acid Bacteria under Simulated Cocoa Pulp Fermentation Conditions
    Philipp Adler, Christoph Josef Bolten, Katrin Dohnt, Carl Erik Hansen, Christoph Wittmann
  • Food Microbiology
    Nisin Resistance of Listeria monocytogenes Is Increased by Exposure to Salt Stress and Is Mediated via LiaR
    Teresa M. Bergholz, Silin Tang, Martin Wiedmann, Kathryn J. Boor
  • Food Microbiology
    Impact of Manure Fertilization on the Abundance of Antibiotic-Resistant Bacteria and Frequency of Detection of Antibiotic Resistance Genes in Soil and on Vegetables at Harvest
    Romain Marti, Andrew Scott, Yuan-Ching Tien, Roger Murray, Lyne Sabourin, Yun Zhang, Edward Topp

Genetics and Molecular Biology

  • Genetics and Molecular Biology
    Augmenting the Genetic Toolbox for Sulfolobus islandicus with a Stringent Positive Selectable Marker for Agmatine Prototrophy
    Changyi Zhang, Tara E. Cooper, David J. Krause, Rachel J. Whitaker
  • Genetics and Molecular Biology
    The Evolutionary Divergence of Shiga Toxin-Producing Escherichia coli Is Reflected in Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Spacer Composition
    Shuang Yin, Mark A. Jensen, Jiawei Bai, Chitrita DebRoy, Rodolphe Barrangou, Edward G. Dudley
  • Genetics and Molecular Biology
    Interaction of Lactobacillus fermentum BGHI14 with Rat Colonic Mucosa: Implications for Colitis Induction
    Jovanka Lukic, Ivana Strahinic, Marina Milenkovic, Natasa Golic, Milan Kojic, Ljubisa Topisirovic, Jelena Begovic
  • Genetics and Molecular Biology
    A Novel Bacillus thuringiensis Cry-Like Protein from a Rare Filamentous Strain Promotes Crystal Localization within the Exosporium
    David R. Ammons, Antonio Reyna, Jose C. Granados, Antonio Ventura-Suárez, Luz I. Rojas-Avelizapa, John D. Short, Joanne N. Rampersad

Invertebrate Microbiology

  • Invertebrate Microbiology
    A Spodoptera exigua Cadherin Serves as a Putative Receptor for Bacillus thuringiensis Cry1Ca Toxin and Shows Differential Enhancement of Cry1Ca and Cry1Ac Toxicity
    Xiang-Liang Ren, Rui-Rui Chen, Ying Zhang, Yan Ma, Jin-Jie Cui, Zhao-Jun Han, Li-Li Mu, Guo-Qing Li

Methods

  • Methods
    Direct Assessment of Viral Diversity in Soils by Random PCR Amplification of Polymorphic DNA
    Sharath Srinivasiah, Jacqueline Lovett, Shawn Polson, Jaysheel Bhavsar, Dhritiman Ghosh, Krishnakali Roy, Jeffry J. Fuhrmann, Mark Radosevich, K. Eric Wommack
  • Methods
    Live-Cell Imaging Tool Optimization To Study Gene Expression Levels and Dynamics in Single Cells of Bacillus cereus
    Robyn T. Eijlander, Oscar P. Kuipers

Microbial Ecology

  • Microbial Ecology
    Psychrophilic and Psychrotolerant Fungi on Bats and the Presence of Geomyces spp. on Bat Wings Prior to the Arrival of White Nose Syndrome
    Lynnaun J. A. N. Johnson, Andrew N. Miller, Robert A. McCleery, Rod McClanahan, Joseph A. Kath, Shiloh Lueschow, Andrea Porras-Alfaro
  • Microbial Ecology
    Duodenal-Mucosal Bacteria Associated with Celiac Disease in Children
    Ester Sánchez, Ester Donat, Carmen Ribes-Koninckx, Maria Leonor Fernández-Murga, Yolanda Sanz
  • Microbial Ecology
    T4-Like Phage Bp7, a Potential Antimicrobial Agent for Controlling Drug-Resistant Escherichia coli in Chickens
    Can Zhang, Wenli Li, Wenhua Liu, Ling Zou, Chen Yan, Kai Lu, Huiying Ren
  • Microbial Ecology
    Whole-Transcriptome Shotgun Sequencing (RNA-seq) Screen Reveals Upregulation of Cellobiose and Motility Operons of Lactobacillus ruminis L5 during Growth on Tetrasaccharides Derived from Barley β-Glucan
    Blair Lawley, Ian M. Sims, Gerald W. Tannock
  • Microbial Ecology
    Diet Complexity and Estrogen Receptor β Status Affect the Composition of the Murine Intestinal Microbiota
    Rani Menon, Sara E. Watson, Laura N. Thomas, Clinton D. Allred, Alan Dabney, M. Andrea Azcarate-Peril, Joseph M. Sturino
  • Microbial Ecology
    Assimilation of Cellulose-Derived Carbon by Microeukaryotes in Oxic and Anoxic Slurries of an Aerated Soil
    Antonis Chatzinotas, Stefanie Schellenberger, Karin Glaser, Steffen Kolb

Physiology

  • Physiology
    Malic Enzyme and Malolactic Enzyme Pathways Are Functionally Linked but Independently Regulated in Lactobacillus casei BL23
    José María Landete, Sergi Ferrer, Vicente Monedero, Manuel Zúñiga

Plant Microbiology

  • Plant Microbiology
    Discovery of Plant Phenolic Compounds That Act as Type III Secretion System Inhibitors or Inducers of the Fire Blight Pathogen, Erwinia amylovora
    Devanshi Khokhani, Chengfang Zhang, Yan Li, Qi Wang, Quan Zeng, Akihiro Yamazaki, William Hutchins, Shan-Shan Zhou, Xin Chen, Ching-Hong Yang
  • Plant Microbiology
    New Type of Antimicrobial Protein Produced by the Plant Pathogen Clavibacter michiganensis subsp. michiganensis
    Zhanliang Liu, Ping Ma, Ingrid Holtsmark, Morten Skaugen, Vincent G. H. Eijsink, May B. Brurberg
  • Plant Microbiology
    LuxR- and LuxI-Type Quorum-Sensing Circuits Are Prevalent in Members of the Populus deltoides Microbiome
    Amy L. Schaefer, Colin R. Lappala, Ryan P. Morlen, Dale A. Pelletier, Tse-Yuan S. Lu, Patricia K. Lankford, Caroline S. Harwood, E. Peter Greenberg

Public Health Microbiology

  • Public Health Microbiology
    Widespread Occurrence of Bacterial Human Virulence Determinants in Soil and Freshwater Environments
    Ditte A. Søborg, Niels Bohse Hendriksen, Mogens Kilian, Niels Kroer
  • Public Health Microbiology
    Shared Mycobacterium avium Genotypes Observed among Unlinked Clinical and Environmental Isolates
    M. Ashworth Dirac, Kris M. Weigel, Mitchell A. Yakrus, Annie L. Becker, Hui-Ling Chen, Gina Fridley, Arthur Sikora, Cate Speake, Elizabeth D. Hilborn, Stacy Pfaller, Gerard A. Cangelosi
  • Public Health Microbiology
    Prevalence of Gastrointestinal Clostridium difficile Carriage in Australian Sheep and Lambs
    Daniel R. Knight, Thomas V. Riley
  • Public Health Microbiology
    Transfer Efficiency of Bacteria and Viruses from Porous and Nonporous Fomites to Fingers under Different Relative Humidity Conditions
    Gerardo U. Lopez, Charles P. Gerba, Akrum H. Tamimi, Masaaki Kitajima, Sheri L. Maxwell, Joan B. Rose

Masthead

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Applied and Environmental Microbiology: 79 (18)

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volume 79, issue 18
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  • Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy
  • Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation
  • Following Coffee Production from Cherries to Cup: Microbiological and Metabolomic Analysis of Wet Processing of Coffea arabica
  • Airborne Disinfection by Dry Fogging Efficiently Inactivates Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Mycobacteria, and Bacterial Spores and Shows Limitations of Commercial Spore Carriers
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