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Table of Contents

November 1, 2013; Volume 79,Issue 21

Spotlight

  • Free
    Spotlight
    Articles of Significant Interest Selected from This Issue by the Editors

Minireview

  • Minireview
    Mapping of Heavy Metal Ion Sorption to Cell-Extracellular Polymeric Substance-Mineral Aggregates by Using Metal-Selective Fluorescent Probes and Confocal Laser Scanning Microscopy
    Likai Hao, Jianli Li, Andreas Kappler, Martin Obst

Biodegradation

  • Biodegradation
    Diversity and Ecophysiology of New Isolates of Extremely Acidophilic CS2-Converting Acidithiobacillus Strains
    Marjan J. Smeulders, Arjan Pol, Marcel H. Zandvoort, Mike S. M. Jetten, Huub J. M. Op den Camp

Biotechnology

  • Biotechnology
    Engineered Escherichia coli with Periplasmic Carbonic Anhydrase as a Biocatalyst for CO2 Sequestration
    Byung Hoon Jo, Im Gyu Kim, Jeong Hyun Seo, Dong Gyun Kang, Hyung Joon Cha
  • Biotechnology
    Dual Substrate Specificity of an N-Acetylglucosamine Phosphotransferase System in Clostridium beijerinckii
    Naief H. Al Makishah, Wilfrid J. Mitchell
  • Biotechnology
    Development of Fatty Acid-Producing Corynebacterium glutamicum Strains
    Seiki Takeno, Manami Takasaki, Akinobu Urabayashi, Akinori Mimura, Tetsuhiro Muramatsu, Satoshi Mitsuhashi, Masato Ikeda
  • Biotechnology
    Probing 3-Hydroxyflavone for In Vitro Glycorandomization of Flavonols by YjiC
    Ramesh Prasad Pandey, Prakash Parajuli, Niranjan Koirala, Je Won Park, Jae Kyung Sohng

Environmental Microbiology

  • Environmental Microbiology
    Use of Aliphatic n-Alkynes To Discriminate Soil Nitrification Activities of Ammonia-Oxidizing Thaumarchaea and Bacteria
    Anne E. Taylor, Neeraja Vajrala, Andrew T. Giguere, Alix I. Gitelman, Daniel J. Arp, David D. Myrold, Luis Sayavedra-Soto, Peter J. Bottomley
  • Environmental Microbiology
    Exoproteome Profiles of Clostridium cellulovorans Grown on Various Carbon Sources
    Kazuma Matsui, Jungu Bae, Kohei Esaka, Hironobu Morisaka, Kouichi Kuroda, Mitsuyoshi Ueda
  • Environmental Microbiology
    Lysobacter enzymogenes Uses Two Distinct Cell-Cell Signaling Systems for Differential Regulation of Secondary-Metabolite Biosynthesis and Colony Morphology
    Guoliang Qian, Yulan Wang, Yiru Liu, Feifei Xu, Ya-Wen He, Liangcheng Du, Vittorio Venturi, Jiaqin Fan, Baishi Hu, Fengquan Liu
  • Environmental Microbiology
    Streptomycin Application Has No Detectable Effect on Bacterial Community Structure in Apple Orchard Soil
    Ashley Shade, Amy K. Klimowicz, Russell N. Spear, Matthew Linske, Justin J. Donato, Clifford S. Hogan, Patricia S. McManus, Jo Handelsman
  • Environmental Microbiology
    Stationary Phase and Nutrient Levels Trigger Transcription of a Genomic Locus Containing a Novel Peptide (TM1316) in the Hyperthermophilic Bacterium Thermotoga maritima
    Andrew D. Frock, Clemente I. Montero, Sara E. Blumer-Schuette, Robert M. Kelly
  • Environmental Microbiology
    Occurrence and Genetic Diversity of Arcobacter butzleri in an Artisanal Dairy Plant in Italy
    Federica Giacometti, Alex Lucchi, Gerardo Manfreda, Daniela Florio, Renato Giulio Zanoni, Andrea Serraino
  • Environmental Microbiology
    New Approaches Indicate Constant Viral Diversity despite Shifts in Assemblage Structure in an Australian Hypersaline Lake
    Joanne B. Emerson, Brian C. Thomas, Karen Andrade, Karla B. Heidelberg, Jillian F. Banfield
  • Environmental Microbiology
    The Genome of the Alga-Associated Marine Flavobacterium Formosa agariphila KMM 3901T Reveals a Broad Potential for Degradation of Algal Polysaccharides
    Alexander J. Mann, Richard L. Hahnke, Sixing Huang, Johannes Werner, Peng Xing, Tristan Barbeyron, Bruno Huettel, Kurt Stüber, Richard Reinhardt, Jens Harder, Frank Oliver Glöckner, Rudolf I. Amann, Hanno Teeling

Enzymology and Protein Engineering

  • Enzymology and Protein Engineering
    Insertion of Endocellulase Catalytic Domains into Thermostable Consensus Ankyrin Scaffolds: Effects on Stability and Cellulolytic Activity
    Eva S. Cunha, Christine L. Hatem, Doug Barrick
  • Enzymology and Protein Engineering
    Arabinoxylan Oligosaccharide Hydrolysis by Family 43 and 51 Glycosidases from Lactobacillus brevis DSM 20054
    Herbert Michlmayr, Johannes Hell, Cindy Lorenz, Stefan Böhmdorfer, Thomas Rosenau, Wolfgang Kneifel

Evolutionary and Genomic Microbiology

  • Evolutionary and Genomic Microbiology
    From Green to Red: Horizontal Gene Transfer of the Phycoerythrin Gene Cluster between Planktothrix Strains
    Ave Tooming-Klunderud, Hanne Sogge, Trine Ballestad Rounge, Alexander J. Nederbragt, Karin Lagesen, Gernot Glöckner, Paul K. Hayes, Thomas Rohrlack, Kjetill S. Jakobsen

Food Microbiology

  • Food Microbiology
    Marked Synergistic Bactericidal Effects and Mode of Action of Medium-Chain Fatty Acids in Combination with Organic Acids against Escherichia coli O157:H7
    S. A. Kim, M. S. Rhee
  • Food Microbiology
    Simultaneous Near-Infrared Radiant Heating and UV Radiation for Inactivating Escherichia coli O157:H7 and Salmonella enterica Serovar Typhimurium in Powdered Red Pepper (Capsicum annuum L.)
    Jae-Won Ha, Dong-Hyun Kang
  • Food Microbiology
    Environmental Detection of Genogroup I, II, and IV Noroviruses by Using a Generic Real-Time Reverse Transcription-PCR Assay
    Takayuki Miura, Sylvain Parnaudeau, Marco Grodzki, Satoshi Okabe, Robert L. Atmar, Françoise S. Le Guyader
  • Food Microbiology
    Moderate Prevalence of Antimicrobial Resistance in Escherichia coli Isolates from Lettuce, Irrigation Water, and Soil
    Kevin Holvoet, Imca Sampers, Benedicte Callens, Jeroen Dewulf, Mieke Uyttendaele
  • Food Microbiology
    Modeling of Fungal and Bacterial Spore Germination under Static and Dynamic Conditions
    Micha Peleg, Mark D. Normand

Genetics and Molecular Biology

  • Genetics and Molecular Biology
    Molecular Analysis of the Acinetobacter baumannii Biofilm-Associated Protein
    H. M. Sharon Goh, Scott A. Beatson, Makrina Totsika, Danilo G. Moriel, Minh-Duy Phan, Jan Szubert, Naomi Runnegar, Hanna E. Sidjabat, David L. Paterson, Graeme R. Nimmo, Jeffrey Lipman, Mark A. Schembri
  • Genetics and Molecular Biology
    Design and Optimization of Short DNA Sequences That Can Be Used as 5′ Fusion Partners for High-Level Expression of Heterologous Genes in Escherichia coli
    Veronika Kucharova, Jørgen Skancke, Trygve Brautaset, Svein Valla
  • Genetics and Molecular Biology
    Antimicrobial Nodule-Specific Cysteine-Rich Peptides Induce Membrane Depolarization-Associated Changes in the Transcriptome of Sinorhizobium meliloti
    Hilda Tiricz, Attila Szűcs, Attila Farkas, Bernadett Pap, Rui M. Lima, Gergely Maróti, Éva Kondorosi, Attila Kereszt
  • Genetics and Molecular Biology
    Substrate-Induced Transcriptional Activation of the MoCel7C Cellulase Gene Is Associated with Methylation of Histone H3 at Lysine 4 in the Rice Blast Fungus Magnaporthe oryzae
    Ba Van Vu, Kieu Thi Minh Pham, Hitoshi Nakayashiki

Methods

  • Methods
    Fluorescence-Based Bacterial Bioreporter for Specific Detection of Methyl Halide Emissions in the Environment
    Muhammad Farhan Ul Haque, Thierry Nadalig, Françoise Bringel, Hubert Schaller, Stéphane Vuilleumier
  • Methods
    Distribution-Based Clustering: Using Ecology To Refine the Operational Taxonomic Unit
    Sarah P. Preheim, Allison R. Perrotta, Antonio M. Martin-Platero, Anika Gupta, Eric J. Alm
  • Methods
    Development of a DNA Microarray Method for Detection and Identification of All 15 Distinct O-Antigen Forms of Legionella pneumophila
    Boyang Cao, Fangfang Yao, Xiangqian Liu, Lu Feng, Lei Wang
  • Methods
    An Improved PCR-Restriction Fragment Length Polymorphism (RFLP) Method for the Identification of cry1-Type Genes
    Changlong Shu, Dongming Liu, Zishan Zhou, Jilin Cai, Qi Peng, Jiguo Gao, Fuping Song, Jie Zhang
  • Methods
    Visualization of Imbalances in Sulfur Assimilation and Synthesis of Sulfur-Containing Amino Acids at the Single-Cell Level
    Kristina Hoffmann, Alexander Grünberger, Frank Lausberg, Michael Bott, Lothar Eggeling
  • Methods
    Cumate-Inducible Gene Expression System for Sphingomonads and Other Alphaproteobacteria
    Andreas Kaczmarczyk, Julia A. Vorholt, Anne Francez-Charlot

Microbial Ecology

  • Microbial Ecology
    Impact of Land Use on Arbuscular Mycorrhizal Fungal Communities in Rural Canada
    Mulan Dai, Luke D. Bainard, Chantal Hamel, Yantai Gan, Derek Lynch

Mycology

  • Mycology
    Differential Gene Expression in Pycnoporus coccineus during Interspecific Mycelial Interactions with Different Competitors
    Yonathan Arfi, Anthony Levasseur, Eric Record
  • Mycology
    Bimodular Peptide Synthetase SidE Produces Fumarylalanine in the Human Pathogen Aspergillus fumigatus
    Wieland Steinchen, Gerald Lackner, Sabiha Yasmin, Markus Schrettl, Hans-Martin Dahse, Hubertus Haas, Dirk Hoffmeister

Masthead

  • Free
    Masthead
    Editorial Board
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Applied and Environmental Microbiology: 79 (21)

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volume 79, issue 21
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  • Community Structure of Arbuscular Mycorrhizal Fungi in Soils of Switchgrass Harvested for Bioenergy
  • Plastics: Environmental and Biotechnological Perspectives on Microbial Degradation
  • Following Coffee Production from Cherries to Cup: Microbiological and Metabolomic Analysis of Wet Processing of Coffea arabica
  • Airborne Disinfection by Dry Fogging Efficiently Inactivates Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2), Mycobacteria, and Bacterial Spores and Shows Limitations of Commercial Spore Carriers
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