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Minireview | Spotlight

Reintroducing mothur: 10 Years Later

Patrick D. Schloss
Andrew J. McBain, Editor
Patrick D. Schloss
aDepartment of Microbiology and Immunology, University of Michigan, Ann Arbor, Michigan, USA
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Andrew J. McBain
University of Manchester
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DOI: 10.1128/AEM.02343-19
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    FIG 1

    mothur has consistently been a popular software package over the past 10 years with more than 8,800 citations. Citation data taken from the Web of Science (https://www.webofscience.com) on 1 October 2019. The gray line segment depicts the projected number of citations for 2019 based on the current number of citations for the year and historical trends.

  • FIG 2
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    FIG 2

    mothur homepage. From the mothur home page at www.mothur.org, users can download mothur, access a user forum, navigate a wiki with extensive documentation, find blog posts that provide additional examples of how to use mothur, join the mothur Facebook group, and subscribe to the mothur mailing list.

  • FIG 3
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    FIG 3

    Start-up window when running mothur in Mac OS X in the interactive mode. mothur can also be run on Windows or Linux. In the interactive mode, users enter individual commands at the mothur prompt. Alternatively, users may run mothur by supplying commands from the command line or using batch scripts.

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Reintroducing mothur: 10 Years Later
Patrick D. Schloss
Applied and Environmental Microbiology Jan 2020, 86 (2) e02343-19; DOI: 10.1128/AEM.02343-19

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Reintroducing mothur: 10 Years Later
Patrick D. Schloss
Applied and Environmental Microbiology Jan 2020, 86 (2) e02343-19; DOI: 10.1128/AEM.02343-19
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KEYWORDS

16S rRNA gene
amplicon
bioinformatics
data analysis
microbial ecology
microbiome

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