TABLE 1

Results of MetaMLST and PanPhlAn analysis of spinach metagenomes spiked with E. coli O157:H7 Sakai

ENA accession no.No. of readsE. coli abundance (%)No. of copiesaSequence typeConfidence (%)
stxA2stxB2
SRR21772509,365,8125.2841211UnknownNA
SRR217725117,562,5424.31712111199.97
SRR217728011,707,29221.163641110000199.97
SRR217728110,580,5322.8418711UnknownNA
SRR21772826,155,63660.514061111100
SRR217728313,120,24410.113271111100
SRR21772847,500,0562.05064NANAUnknownNA
SRR217728514,482,37066.698131111100
SRR217728614,035,97069.178341111100
SRR217728712,242,3485.6274611UnknownNA
SRR21772888,303,78810.750051111100
SRR217735714,621,6728.020471111100
SRR217735810,684,0523.1865211UnknownNA
SRR21773594,964,4361.1714611UnknownNA
SRR217736012,729,8341.8122910UnknownNA
SRR217736111,946,0920.7092101UnknownNA
  • a NA, not applicable.