Table 3.

List of studied strains and results of dot blot hybridizations and FISH with oligonucleotide probes

OrganismStrainaHybridization with probeb
Bcv14bALBO34aSUBU1237
DBHFISHDBHFISHFISH
Beta subclass ofProteobacteria
Acidovorax avenae avenae LMG 2117T
 Acidovorax delafieldiiLMG 5943T
 Acidovorax konjaciiLMG 5691T
 Acidovorax temperansLMG 7169T
 Alcaligenes denitrificans subsp. xylosoxidansWS 2166T ++
 Ralstonia eutrophusLMG 1199T
 Alcaligenes faecalis faecalisLMG 1229T ++
 Aquaspirillum metamorphumDSM 1837T
 Bordetella aviumLMG 1852T ++
 Bordetella parapertussisLMG 1831T ++
 Burkholderia andropogonisLMG 2129T +
 Burkholderia caryophylliLMG 2155T +
 Burkholderia cepaciaLMG 1222T +++
 Burkholderia cepaciaDSM 50180+++
 Burkholderia cepaciaDSM 50181+++
 Burkholderia cepaciaLMG 6859+++
 Burkholderia cepaciaLMG 6888+++
 Burkholderia cepaciaLMG 6980+++
 Burkholderia cepaciaLMG 6988+++
 Burkholderia cepaciaLMG 10824+++
 Burkholderia cepaciaLMG 6860 t1+++
 Burkholderia cepaciaLMG 6860 t2+++
 Burkholderia gladioli pv. gladioliiLMG 2216+
 Burkholderia glumaeLMG 2196T +
 Ralstonia pickettiiLMG 5942T +
 Burkholderia plantariiLMG 9035+
 Burkholderia solanacearumLMG 2299T +
 Burkholderia vietnamiensisLMG 10929+++
 Chromobacterium violaceumLMG 1267T
 Comamonas terrigenaLMG 1253T
 Comamonas terrigenaLMG 2370
 Comamonas acidovoransLMG 1226T
 Comamonas testosteroniLMG 1800T
 Hydrogenophaga palleroniiLMG 2366T
 Hydrogenophaga pseudoflavaLMG 5945T
 Hydrogenophaga taeniospiralisLMG 7170T
 Iodobacter fluviatileLMG 6630T
 Leptothrix discophoraLMG 8141
 Neisseria canisLMG 8383T
 Neisseria siccaLMG 5290T
 Nitrosomonas europaeaATCC 25978T NDNDND
 Rhodocyclus tenuisLMG 4367T
 Rubrivivax gelatinosusLMG 4311T NDNDND
 Simonsiella muelleriLMG 7828T NDNDND
 Thiobacillus perometabolisLMG 8564T NDNDND
 Variovorax paradoxusLMG 1797T
 Vitreoscilla stercorariaLMG 7756T
 Zoogloea ramigeraATCC 25935NDNDND
 Zoogloea ramigeraATCC 19544NDNDND
Gamma subclass of Proteobacteria
 Escherichia coliATCC 11775T
 Citrobacter freundiiLMG 3246T NDNDND
 Klebsiella terrigenaDSM 2687NDNDND
 Klebsiella plantarumDSM 3069NDNDND
 Proteus vulgarisLMG 2096T NDNDND
 Aeromonas hydrophilaATCC 7966T NDNDND
 Aeromonas schubertiiLMG 90745NDNDND
 Pseudomonas aeruginosaDSM 5007T
 Pseudomonas putidaLMG 2257T
 Pseudomonas fluorescensDSM 50124
 Acinetobacter calcoaceticusATCC 23055T ND
 Acinetobacter lwoffiiATCC 15309T NDNDND
 Shewanella putrefaciensLMG 2268TNDNDND
 Agrobacterium rhizogenesDSM 30148NDNDND
Bcv14bALBO34aSUBU1237
DBHFISHDBHFISHFISH
Alpha subclass ofProteobacteria
 Zoogloea ramigeraATCC 19623NDND
 Paracoccus denitrificansDSM 65T ND
 Bradyrhizobium japonicumLMG 6138T NDNDND
 Methylobacterium extorquensDSM 1337T NDNDND
 Methylobacterium organophilumLMG 6083NDNDND
 Azorhizobium caulinodansLMG 6463T NDNDND
 Rhizobium leguminosumNDNDND
 Brevundimonas diminutaDSM 1635
 Brevundimonas vesicularisWS 1654NDNDND
 Sphingomonas paucimoilisLMG 1227T NDNDND
 Sphingomonas yanoikuyaeLMG 11252T NDNDND
 Flavobacterium devoransLMG 4017T NDNDND
Cyanobacteria
 Anabaena sp.ATCC 29151NDNDND
 Anabaena variabilisATCC 29413NDNDND
 Anacystis nidulansATCC 27144NDNDND
 Gram-positive bacteria with high G+C DNA content
 Corynebacterium betaeDSM 20141NDNDND
 Corynebacterium glutamicumDSM 20300NDNDND
 Rhodococcus ruberDSM 43338NDNDND
 Rhodococcus terraeDSM 93249NDNDND
 Micrococcus auranticusATCC 11731NDNDND
 Arthrobacter citreusDSM 20133NDNDND
 Arthrobacter globiformisDSM 20124NDNDND
Gram positive bacteria with low G+C DNA content
 Microbacterium imperialeDSM 20530T NDNDND
 Lactobacillus curvatusLTH 1702NDNDND
 Lactobacillus fermentumWS 1024TNDNDND
 Streptococcus bovisDSM 20480NDNDND
 Enterococcus cecorumLMG 12902T NDNDND
 Enterococcus hiraeLMG 6399T NDNDND
 Staphylococcus carnosusDSM 20501T NDNDND
 Bacillus firmusDSM 12T NDNDND
 Bacillus sphaericusDSM 28T NDNDND
 Mycoplasma bullataATCC 4278NDNDND
  • a ATCC, American Type Culture Collection, Rockville, MD, USA; DSM, Deutsche Sammlung von Mikroorganismen und Zellkulturen, Braunschweig, Germany; LMG, Laboratotium voor Microbiologie, Universiteit Gent, Ghent, Belgium; WS, Bakteriologisches Institut der Süddeutschen Versuchs- und Forschungsanstalt für Milchwirtschaft, TU München, Freising-Weihenstephan, Germany.

  • b +, positive for hybridization; −, negative for hybridization; ND, not determined; DBH, dot blot hybridization.