TABLE 3

Differences in the relative abundances of significant OTUs between controls and vaccinated broilers

OTUOrganism(s)% identityFold change in relative abundance for groupP value
PBSCjEcEcLrEcAm
OTU_11Campylobacter jejuni subsp. jejuni-Campylobacter subantarcticus1000.21443.61701.10090.73572.22920.0075
OTU_13Proteus mirabilis1000.00060.09434.07374.95390.6917<0.0001
OTU_15Enterococcus casseliflavus-Enterococcus faecium-Enterococcus gallinarum-Enterococcus dispar-Enterococcus canintestini1002.41720.99821.31401.41331.32260.0389
OTU_16Enterococcus cecorum1004.64692.82681.71851.87451.10140.0008
OTU_20Ruminococcus sp.-Blautia sp.98.70.15620.53810.29190.75080.54640.0157
OTU_21Clostridium paraputrificum1000.56220.50250.05240.36060.05480.0410
OTU_24Weissella paramesenteroides1000.64530.17610.38110.23470.05840.0304
OTU_33Escherichia coli-Shigella dysenteriae99.572.82631.85721.96892.13613.89450.0311
OTU_34Corynebacterium variabile1000.04090.06580.02590.01240.00710.0147
OTU_37Corynebacterium sp.1000.01380.01750.00920.01250.00390.0258
OTU_4Blautia hydrogenotrophica-Ruminococcus hydrogenotrophicus94.644.923511.643211.520820.971016.13440.0064
OTU_47Achromobacter spanius-Achromobacter xylosoxidans-Achromobacter piechaudii-Achromobacter marplatensis-Alcaligenes faecalis-Collimonas sp.1000.00000.00030.00130.00110.00030.0462
OTU_56Clostridium clostridioforme95.710.00060.00080.00000.00080.00200.0139
OTU_57Sanguibacter inulinus1000.00400.00020.00020.00030.00000.0012
OTU_59Pseudomonas geniculata-Stenotrophomonas maltophilia-Xanthomonas sp.-Pectobacterium carotovorum subsp. carotovorum1000.00170.00420.00600.00030.00000.0076
OTU_61Brevibacterium stationis-Corynebacterium sp.1000.00000.00000.00030.00220.00000.0268
OTU_7Weissella cibaria-Weissella confusa1008.53463.52793.28512.87293.23140.0411
OTU_80Clostridium aldenense98.070.71100.63453.10514.04954.39840.0040